HEADER SIGNALING PROTEIN 31-DEC-08 2KD0 TITLE NMR SOLUTION STRUCTURE OF O64736 PROTEIN FROM ARABIDOPSIS THALIANA. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM MEGA TARGET AR3445A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LRR REPEATS AND UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN COMPND 3 AT2G30105; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 11-85; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE FIRST 10 RESIDUES OF THE SEQUENCE MGHHHHHHSH COMPND 8 CORRESPOND TO A N-TERMINAL TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G30105, T27E13.16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14-15C KEYWDS UBIQUITIN-LIKE PROTEIN, NESG, AR3445A, LEUCINE-RICH REPEAT, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.V.T.SWAPNA,R.SHASTRY,E.FOOTE,C.CICCOSANTI,M.JIANG,R.XIAO,R.NAIR, AUTHOR 2 J.EVERETT,Y.HUANG,T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 08-MAY-24 2KD0 1 REMARK REVDAT 3 14-JUN-23 2KD0 1 REMARK REVDAT 2 19-FEB-20 2KD0 1 REMARK SEQADV REVDAT 1 10-FEB-09 2KD0 0 JRNL AUTH G.V.T.SWAPNA,R.SHASTRY,E.FOOTE,C.CICCOSANTI,M.JIANG,R.XIAO, JRNL AUTH 2 R.NAIR,J.EVERETT,Y.HUANG,T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL NMR SOLUTION STRUCTURE OF O64736 PROTEIN FROM ARABIDOPSIS JRNL TITL 2 THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE 2.2.1, CNS 2.0.6 REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS DETERMINED USING REMARK 3 TRIPLE RESONANCE NMR SPECTROSCOPY. AUTOMATED BACKBONE RESONANCE REMARK 3 ASSIGNMENTS WERE MADE USING AUTOASSIGN AND THE SIDE CHAIN REMARK 3 ASSIGNMENTS WERE COMPLETED MANUALLY. AUTOMATED NOESY ASSIGNMENTS REMARK 3 WERE MADE USING AUTOSTRUCTURE AND CYANA-2.1. DIHEDRAL ANGLE REMARK 3 CONSTRAINTS WERE OBTAINED FROM TALOS. COMPLETENESS OF REMARK 3 ASSIGNMENTS EXCLUDING THE N-TERMINAL TAG-MGHHHHHHSH: BACKBONE REMARK 3 100%, SIDECHAIN (ALIPHATIC) 99%, SIDECHAIN (AROMATIC) 90%; REMARK 3 STEREOSPECIFIC METHYL ASSIGNMENTS 100%. THE ASSIGNMENTS WERE REMARK 3 VALIDATED USING AVS SOFTWARE. FINAL STRUCTURE QUALITY FACTORS REMARK 3 WERE DETERMINED USING PSVS-1.3; ORDERED RESIDUES WERE DEFINED AS REMARK 3 12-19,22-82. RMSD (ORDERED RESIDUES) ALL BACKBONE ATOMS: 0.5A, REMARK 3 ALL HEAVY ATOMS: 0.8A. RAMACHANDRAN STATISTICS FOR ALL ORDERED REMARK 3 RESIDUES: MOST FAVOURED 84.3%, ADDITIONALLY ALLOWED 15.7%. REMARK 3 MOLPROBITY CLASHSCORE (RAW/Z-): 16.88/-1.37. PROCHECK SCORES FOR REMARK 3 ORDERED RESIDUES: PHI-PSI, -0.50/-1.65, ALL, -0.19/-1.12 REMARK 4 REMARK 4 2KD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000100967. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 5MM CACL2, 200MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8 MM [U-100% 13C; U-100% 15N] REMARK 210 SAMPLE_1-1, 90% H2O/10% D2O; REMARK 210 1.80 MM [U-10% 13C; U-100% 15N] REMARK 210 SAMPLE_2-2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D HBHANH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.4.0, NMRPIPE, CYANA REMARK 210 2.1, SPARKY 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 16.90 56.97 REMARK 500 1 GLN A 52 83.31 -66.21 REMARK 500 2 HIS A 3 89.91 -68.55 REMARK 500 2 HIS A 8 -6.62 65.64 REMARK 500 3 GLN A 52 79.96 -67.06 REMARK 500 4 HIS A 3 92.02 -64.85 REMARK 500 4 HIS A 4 103.01 -161.06 REMARK 500 4 GLN A 52 92.36 -56.57 REMARK 500 5 HIS A 3 45.94 -102.48 REMARK 500 5 HIS A 5 90.28 -68.75 REMARK 500 5 SER A 11 86.74 64.86 REMARK 500 5 SER A 70 45.55 -141.40 REMARK 500 6 HIS A 3 40.88 -80.19 REMARK 500 6 HIS A 5 -35.05 70.67 REMARK 500 6 HIS A 6 99.07 -57.13 REMARK 500 6 SER A 74 89.29 -65.87 REMARK 500 7 SER A 83 19.68 54.33 REMARK 500 8 GLN A 52 85.81 -61.68 REMARK 500 9 GLN A 52 94.87 -66.98 REMARK 500 10 SER A 9 -172.34 -69.43 REMARK 500 10 SER A 11 103.96 -58.18 REMARK 500 11 HIS A 10 -167.03 -106.61 REMARK 500 11 SER A 11 37.36 -74.78 REMARK 500 12 HIS A 7 84.49 -68.48 REMARK 500 12 SER A 11 27.54 -142.46 REMARK 500 12 GLN A 52 95.36 -68.51 REMARK 500 12 SER A 74 91.52 -67.90 REMARK 500 13 SER A 83 102.26 -164.75 REMARK 500 14 HIS A 3 -161.47 -63.80 REMARK 500 14 SER A 9 24.67 48.83 REMARK 500 14 GLN A 52 86.26 -59.38 REMARK 500 15 ILE A 44 -64.14 -107.74 REMARK 500 15 GLN A 52 91.60 -62.10 REMARK 500 16 HIS A 7 109.33 -56.70 REMARK 500 16 SER A 11 -168.07 -111.57 REMARK 500 16 ASN A 46 85.87 61.32 REMARK 500 16 SER A 74 104.93 -58.98 REMARK 500 16 GLN A 84 -73.93 -80.00 REMARK 500 17 HIS A 3 45.53 -81.05 REMARK 500 17 HIS A 5 81.04 53.76 REMARK 500 17 HIS A 10 20.54 -160.03 REMARK 500 17 ASP A 31 30.46 -93.49 REMARK 500 18 ASN A 46 63.06 64.98 REMARK 500 19 HIS A 4 -32.23 70.36 REMARK 500 19 ILE A 44 -60.25 -103.96 REMARK 500 19 SER A 83 30.33 -80.02 REMARK 500 20 SER A 9 94.60 -64.31 REMARK 500 20 SER A 11 102.48 -53.67 REMARK 500 20 GLN A 52 80.86 -68.71 REMARK 500 20 LYS A 57 19.84 59.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16101 RELATED DB: BMRB REMARK 900 RELATED ID: AR3445A RELATED DB: TARGETDB DBREF 2KD0 A 11 85 UNP P0C895 Y2010_ARATH 11 85 SEQADV 2KD0 MET A 1 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 GLY A 2 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 HIS A 3 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 HIS A 4 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 HIS A 5 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 HIS A 6 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 HIS A 7 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 HIS A 8 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 SER A 9 UNP P0C895 EXPRESSION TAG SEQADV 2KD0 HIS A 10 UNP P0C895 EXPRESSION TAG SEQRES 1 A 85 MET GLY HIS HIS HIS HIS HIS HIS SER HIS SER THR ILE SEQRES 2 A 85 LYS LEU THR VAL LYS PHE GLY GLY LYS SER ILE PRO LEU SEQRES 3 A 85 SER VAL SER PRO ASP CYS THR VAL LYS ASP LEU LYS SER SEQRES 4 A 85 GLN LEU GLN PRO ILE THR ASN VAL LEU PRO ARG GLY GLN SEQRES 5 A 85 LYS LEU ILE PHE LYS GLY LYS VAL LEU VAL GLU THR SER SEQRES 6 A 85 THR LEU LYS GLN SER ASP VAL GLY SER GLY ALA LYS LEU SEQRES 7 A 85 MET LEU MET ALA SER GLN GLY HELIX 1 1 HIS A 4 HIS A 8 5 5 HELIX 2 2 THR A 33 ASN A 46 1 14 SHEET 1 A 5 LYS A 22 VAL A 28 0 SHEET 2 A 5 ILE A 13 PHE A 19 -1 N PHE A 19 O LYS A 22 SHEET 3 A 5 ALA A 76 MET A 81 1 O LEU A 78 N LYS A 18 SHEET 4 A 5 LYS A 53 PHE A 56 -1 N ILE A 55 O MET A 79 SHEET 5 A 5 LYS A 59 VAL A 60 -1 O LYS A 59 N PHE A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1