data_2KDF # _entry.id 2KDF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KDF pdb_00002kdf 10.2210/pdb2kdf/pdb RCSB RCSB100982 ? ? WWPDB D_1000100982 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' struct_conn 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_entry_details 8 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KDF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1YX4 PDB 'Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition' unspecified 1YX5 PDB 'Solution Structure of S5a UIM-1/Ubiquitin Complex' unspecified 1YX6 PDB 'Solution Structure of S5a UIM-2/Ubiquitin Complex' unspecified 1D3Z PDB 'UBIQUITIN NMR STRUCTURE' unspecified 2KDE PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, N.' 1 'Wang, Q.' 2 'Ehlinger, A.' 3 'Randles, L.' 4 'Lary, J.W.' 5 'Kang, Y.' 6 'Haririnia, A.' 7 'Cole, J.L.' 8 'Fushman, D.' 9 'Walters, K.J.' 10 # _citation.id primary _citation.title 'Structure of the s5a:k48-linked diubiquitin complex and its interactions with rpn13.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 35 _citation.page_first 280 _citation.page_last 290 _citation.year 2009 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19683493 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2009.06.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, N.' 1 ? primary 'Wang, Q.' 2 ? primary 'Ehlinger, A.' 3 ? primary 'Randles, L.' 4 ? primary 'Lary, J.W.' 5 ? primary 'Kang, Y.' 6 ? primary 'Haririnia, A.' 7 ? primary 'Storaska, A.J.' 8 ? primary 'Cole, J.L.' 9 ? primary 'Fushman, D.' 10 ? primary 'Walters, K.J.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '26S proteasome non-ATPase regulatory subunit 4' 11826.878 1 ? ? 'UNP residues 196-306, S5a fragment' ? 2 polymer man Ubiquitin 8576.831 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '26S proteasome regulatory subunit S5A, Rpn10, Multiubiquitin chain-binding protein, Antisecretory factor 1, ASF, AF' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGL PDLSSMTEEEQIAYAMQMSLQGAEFGQAESA ; ;MLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGL PDLSSMTEEEQIAYAMQMSLQGAEFGQAESA ; A ? 2 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 GLY n 1 4 LEU n 1 5 GLY n 1 6 ALA n 1 7 SER n 1 8 ASP n 1 9 PHE n 1 10 GLU n 1 11 PHE n 1 12 GLY n 1 13 VAL n 1 14 ASP n 1 15 PRO n 1 16 SER n 1 17 ALA n 1 18 ASP n 1 19 PRO n 1 20 GLU n 1 21 LEU n 1 22 ALA n 1 23 LEU n 1 24 ALA n 1 25 LEU n 1 26 ARG n 1 27 VAL n 1 28 SER n 1 29 MET n 1 30 GLU n 1 31 GLU n 1 32 GLN n 1 33 ARG n 1 34 GLN n 1 35 ARG n 1 36 GLN n 1 37 GLU n 1 38 GLU n 1 39 GLU n 1 40 ALA n 1 41 ARG n 1 42 ARG n 1 43 ALA n 1 44 ALA n 1 45 ALA n 1 46 ALA n 1 47 SER n 1 48 ALA n 1 49 ALA n 1 50 GLU n 1 51 ALA n 1 52 GLY n 1 53 ILE n 1 54 ALA n 1 55 THR n 1 56 THR n 1 57 GLY n 1 58 THR n 1 59 GLU n 1 60 ASP n 1 61 SER n 1 62 ASP n 1 63 ASP n 1 64 ALA n 1 65 LEU n 1 66 LEU n 1 67 LYS n 1 68 MET n 1 69 THR n 1 70 ILE n 1 71 SER n 1 72 GLN n 1 73 GLN n 1 74 GLU n 1 75 PHE n 1 76 GLY n 1 77 ARG n 1 78 THR n 1 79 GLY n 1 80 LEU n 1 81 PRO n 1 82 ASP n 1 83 LEU n 1 84 SER n 1 85 SER n 1 86 MET n 1 87 THR n 1 88 GLU n 1 89 GLU n 1 90 GLU n 1 91 GLN n 1 92 ILE n 1 93 ALA n 1 94 TYR n 1 95 ALA n 1 96 MET n 1 97 GLN n 1 98 MET n 1 99 SER n 1 100 LEU n 1 101 GLN n 1 102 GLY n 1 103 ALA n 1 104 GLU n 1 105 PHE n 1 106 GLY n 1 107 GLN n 1 108 ALA n 1 109 GLU n 1 110 SER n 1 111 ALA n 2 1 MET n 2 2 GLN n 2 3 ILE n 2 4 PHE n 2 5 VAL n 2 6 LYS n 2 7 THR n 2 8 LEU n 2 9 THR n 2 10 GLY n 2 11 LYS n 2 12 THR n 2 13 ILE n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 VAL n 2 18 GLU n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 THR n 2 23 ILE n 2 24 GLU n 2 25 ASN n 2 26 VAL n 2 27 LYS n 2 28 ALA n 2 29 LYS n 2 30 ILE n 2 31 GLN n 2 32 ASP n 2 33 LYS n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 PRO n 2 38 PRO n 2 39 ASP n 2 40 GLN n 2 41 GLN n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 PHE n 2 46 ALA n 2 47 GLY n 2 48 LYS n 2 49 GLN n 2 50 LEU n 2 51 GLU n 2 52 ASP n 2 53 GLY n 2 54 ARG n 2 55 THR n 2 56 LEU n 2 57 SER n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 ILE n 2 62 GLN n 2 63 LYS n 2 64 GLU n 2 65 SER n 2 66 THR n 2 67 LEU n 2 68 HIS n 2 69 LEU n 2 70 VAL n 2 71 LEU n 2 72 ARG n 2 73 LEU n 2 74 ARG n 2 75 GLY n 2 76 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? Human ? 'PSMD4, MCB1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? pET26b ? ? ? ? ? 2 1 sample ? ? ? Human ? 'RPS27A, UBA80, UBCEP1, UBA52, UBCEP2, UBB, UBC' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? pET3a ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 196 196 MET MET A . n A 1 2 LEU 2 197 197 LEU LEU A . n A 1 3 GLY 3 198 198 GLY GLY A . n A 1 4 LEU 4 199 199 LEU LEU A . n A 1 5 GLY 5 200 200 GLY GLY A . n A 1 6 ALA 6 201 201 ALA ALA A . n A 1 7 SER 7 202 202 SER SER A . n A 1 8 ASP 8 203 203 ASP ASP A . n A 1 9 PHE 9 204 204 PHE PHE A . n A 1 10 GLU 10 205 205 GLU GLU A . n A 1 11 PHE 11 206 206 PHE PHE A . n A 1 12 GLY 12 207 207 GLY GLY A . n A 1 13 VAL 13 208 208 VAL VAL A . n A 1 14 ASP 14 209 209 ASP ASP A . n A 1 15 PRO 15 210 210 PRO PRO A . n A 1 16 SER 16 211 211 SER SER A . n A 1 17 ALA 17 212 212 ALA ALA A . n A 1 18 ASP 18 213 213 ASP ASP A . n A 1 19 PRO 19 214 214 PRO PRO A . n A 1 20 GLU 20 215 215 GLU GLU A . n A 1 21 LEU 21 216 216 LEU LEU A . n A 1 22 ALA 22 217 217 ALA ALA A . n A 1 23 LEU 23 218 218 LEU LEU A . n A 1 24 ALA 24 219 219 ALA ALA A . n A 1 25 LEU 25 220 220 LEU LEU A . n A 1 26 ARG 26 221 221 ARG ARG A . n A 1 27 VAL 27 222 222 VAL VAL A . n A 1 28 SER 28 223 223 SER SER A . n A 1 29 MET 29 224 224 MET MET A . n A 1 30 GLU 30 225 225 GLU GLU A . n A 1 31 GLU 31 226 226 GLU GLU A . n A 1 32 GLN 32 227 227 GLN GLN A . n A 1 33 ARG 33 228 228 ARG ARG A . n A 1 34 GLN 34 229 229 GLN GLN A . n A 1 35 ARG 35 230 230 ARG ARG A . n A 1 36 GLN 36 231 231 GLN GLN A . n A 1 37 GLU 37 232 232 GLU GLU A . n A 1 38 GLU 38 233 233 GLU GLU A . n A 1 39 GLU 39 234 234 GLU GLU A . n A 1 40 ALA 40 235 235 ALA ALA A . n A 1 41 ARG 41 236 236 ARG ARG A . n A 1 42 ARG 42 237 237 ARG ARG A . n A 1 43 ALA 43 238 238 ALA ALA A . n A 1 44 ALA 44 239 239 ALA ALA A . n A 1 45 ALA 45 240 240 ALA ALA A . n A 1 46 ALA 46 241 241 ALA ALA A . n A 1 47 SER 47 242 242 SER SER A . n A 1 48 ALA 48 243 243 ALA ALA A . n A 1 49 ALA 49 244 244 ALA ALA A . n A 1 50 GLU 50 245 245 GLU GLU A . n A 1 51 ALA 51 246 246 ALA ALA A . n A 1 52 GLY 52 247 247 GLY GLY A . n A 1 53 ILE 53 248 248 ILE ILE A . n A 1 54 ALA 54 249 249 ALA ALA A . n A 1 55 THR 55 250 250 THR THR A . n A 1 56 THR 56 251 251 THR THR A . n A 1 57 GLY 57 252 252 GLY GLY A . n A 1 58 THR 58 253 253 THR THR A . n A 1 59 GLU 59 254 254 GLU GLU A . n A 1 60 ASP 60 255 255 ASP ASP A . n A 1 61 SER 61 256 256 SER SER A . n A 1 62 ASP 62 257 257 ASP ASP A . n A 1 63 ASP 63 258 258 ASP ASP A . n A 1 64 ALA 64 259 259 ALA ALA A . n A 1 65 LEU 65 260 260 LEU LEU A . n A 1 66 LEU 66 261 261 LEU LEU A . n A 1 67 LYS 67 262 262 LYS LYS A . n A 1 68 MET 68 263 263 MET MET A . n A 1 69 THR 69 264 264 THR THR A . n A 1 70 ILE 70 265 265 ILE ILE A . n A 1 71 SER 71 266 266 SER SER A . n A 1 72 GLN 72 267 267 GLN GLN A . n A 1 73 GLN 73 268 268 GLN GLN A . n A 1 74 GLU 74 269 269 GLU GLU A . n A 1 75 PHE 75 270 270 PHE PHE A . n A 1 76 GLY 76 271 271 GLY GLY A . n A 1 77 ARG 77 272 272 ARG ARG A . n A 1 78 THR 78 273 273 THR THR A . n A 1 79 GLY 79 274 274 GLY GLY A . n A 1 80 LEU 80 275 275 LEU LEU A . n A 1 81 PRO 81 276 276 PRO PRO A . n A 1 82 ASP 82 277 277 ASP ASP A . n A 1 83 LEU 83 278 278 LEU LEU A . n A 1 84 SER 84 279 279 SER SER A . n A 1 85 SER 85 280 280 SER SER A . n A 1 86 MET 86 281 281 MET MET A . n A 1 87 THR 87 282 282 THR THR A . n A 1 88 GLU 88 283 283 GLU GLU A . n A 1 89 GLU 89 284 284 GLU GLU A . n A 1 90 GLU 90 285 285 GLU GLU A . n A 1 91 GLN 91 286 286 GLN GLN A . n A 1 92 ILE 92 287 287 ILE ILE A . n A 1 93 ALA 93 288 288 ALA ALA A . n A 1 94 TYR 94 289 289 TYR TYR A . n A 1 95 ALA 95 290 290 ALA ALA A . n A 1 96 MET 96 291 291 MET MET A . n A 1 97 GLN 97 292 292 GLN GLN A . n A 1 98 MET 98 293 293 MET MET A . n A 1 99 SER 99 294 294 SER SER A . n A 1 100 LEU 100 295 295 LEU LEU A . n A 1 101 GLN 101 296 296 GLN GLN A . n A 1 102 GLY 102 297 297 GLY GLY A . n A 1 103 ALA 103 298 298 ALA ALA A . n A 1 104 GLU 104 299 299 GLU GLU A . n A 1 105 PHE 105 300 300 PHE PHE A . n A 1 106 GLY 106 301 301 GLY GLY A . n A 1 107 GLN 107 302 302 GLN GLN A . n A 1 108 ALA 108 303 303 ALA ALA A . n A 1 109 GLU 109 304 304 GLU GLU A . n A 1 110 SER 110 305 305 SER SER A . n A 1 111 ALA 111 306 306 ALA ALA A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 ILE 3 3 3 ILE ILE B . n B 2 4 PHE 4 4 4 PHE PHE B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 LYS 6 6 6 LYS LYS B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 LEU 8 8 8 LEU LEU B . n B 2 9 THR 9 9 9 THR THR B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 ILE 13 13 13 ILE ILE B . n B 2 14 THR 14 14 14 THR THR B . n B 2 15 LEU 15 15 15 LEU LEU B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 VAL 17 17 17 VAL VAL B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 PRO 19 19 19 PRO PRO B . n B 2 20 SER 20 20 20 SER SER B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 THR 22 22 22 THR THR B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 GLU 24 24 24 GLU GLU B . n B 2 25 ASN 25 25 25 ASN ASN B . n B 2 26 VAL 26 26 26 VAL VAL B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 LYS 29 29 29 LYS LYS B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 GLN 31 31 31 GLN GLN B . n B 2 32 ASP 32 32 32 ASP ASP B . n B 2 33 LYS 33 33 33 LYS LYS B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 PRO 38 38 38 PRO PRO B . n B 2 39 ASP 39 39 39 ASP ASP B . n B 2 40 GLN 40 40 40 GLN GLN B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 ARG 42 42 42 ARG ARG B . n B 2 43 LEU 43 43 43 LEU LEU B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 PHE 45 45 45 PHE PHE B . n B 2 46 ALA 46 46 46 ALA ALA B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 LYS 48 48 48 LYS LYS B . n B 2 49 GLN 49 49 49 GLN GLN B . n B 2 50 LEU 50 50 50 LEU LEU B . n B 2 51 GLU 51 51 51 GLU GLU B . n B 2 52 ASP 52 52 52 ASP ASP B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ARG 54 54 54 ARG ARG B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 LYS 63 63 63 LYS LYS B . n B 2 64 GLU 64 64 64 GLU GLU B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 THR 66 66 66 THR THR B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 HIS 68 68 68 HIS HIS B . n B 2 69 LEU 69 69 69 LEU LEU B . n B 2 70 VAL 70 70 70 VAL VAL B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 ARG 72 72 72 ARG ARG B . n B 2 73 LEU 73 73 73 LEU LEU B . n B 2 74 ARG 74 74 74 ARG ARG B . n B 2 75 GLY 75 75 75 GLY GLY B . n B 2 76 GLY 76 76 76 GLY GLY B . n C 2 1 MET 1 77 77 MET MET C . n C 2 2 GLN 2 78 78 GLN GLN C . n C 2 3 ILE 3 79 79 ILE ILE C . n C 2 4 PHE 4 80 80 PHE PHE C . n C 2 5 VAL 5 81 81 VAL VAL C . n C 2 6 LYS 6 82 82 LYS LYS C . n C 2 7 THR 7 83 83 THR THR C . n C 2 8 LEU 8 84 84 LEU LEU C . n C 2 9 THR 9 85 85 THR THR C . n C 2 10 GLY 10 86 86 GLY GLY C . n C 2 11 LYS 11 87 87 LYS LYS C . n C 2 12 THR 12 88 88 THR THR C . n C 2 13 ILE 13 89 89 ILE ILE C . n C 2 14 THR 14 90 90 THR THR C . n C 2 15 LEU 15 91 91 LEU LEU C . n C 2 16 GLU 16 92 92 GLU GLU C . n C 2 17 VAL 17 93 93 VAL VAL C . n C 2 18 GLU 18 94 94 GLU GLU C . n C 2 19 PRO 19 95 95 PRO PRO C . n C 2 20 SER 20 96 96 SER SER C . n C 2 21 ASP 21 97 97 ASP ASP C . n C 2 22 THR 22 98 98 THR THR C . n C 2 23 ILE 23 99 99 ILE ILE C . n C 2 24 GLU 24 100 100 GLU GLU C . n C 2 25 ASN 25 101 101 ASN ASN C . n C 2 26 VAL 26 102 102 VAL VAL C . n C 2 27 LYS 27 103 103 LYS LYS C . n C 2 28 ALA 28 104 104 ALA ALA C . n C 2 29 LYS 29 105 105 LYS LYS C . n C 2 30 ILE 30 106 106 ILE ILE C . n C 2 31 GLN 31 107 107 GLN GLN C . n C 2 32 ASP 32 108 108 ASP ASP C . n C 2 33 LYS 33 109 109 LYS LYS C . n C 2 34 GLU 34 110 110 GLU GLU C . n C 2 35 GLY 35 111 111 GLY GLY C . n C 2 36 ILE 36 112 112 ILE ILE C . n C 2 37 PRO 37 113 113 PRO PRO C . n C 2 38 PRO 38 114 114 PRO PRO C . n C 2 39 ASP 39 115 115 ASP ASP C . n C 2 40 GLN 40 116 116 GLN GLN C . n C 2 41 GLN 41 117 117 GLN GLN C . n C 2 42 ARG 42 118 118 ARG ARG C . n C 2 43 LEU 43 119 119 LEU LEU C . n C 2 44 ILE 44 120 120 ILE ILE C . n C 2 45 PHE 45 121 121 PHE PHE C . n C 2 46 ALA 46 122 122 ALA ALA C . n C 2 47 GLY 47 123 123 GLY GLY C . n C 2 48 LYS 48 124 124 LYS LYS C . n C 2 49 GLN 49 125 125 GLN GLN C . n C 2 50 LEU 50 126 126 LEU LEU C . n C 2 51 GLU 51 127 127 GLU GLU C . n C 2 52 ASP 52 128 128 ASP ASP C . n C 2 53 GLY 53 129 129 GLY GLY C . n C 2 54 ARG 54 130 130 ARG ARG C . n C 2 55 THR 55 131 131 THR THR C . n C 2 56 LEU 56 132 132 LEU LEU C . n C 2 57 SER 57 133 133 SER SER C . n C 2 58 ASP 58 134 134 ASP ASP C . n C 2 59 TYR 59 135 135 TYR TYR C . n C 2 60 ASN 60 136 136 ASN ASN C . n C 2 61 ILE 61 137 137 ILE ILE C . n C 2 62 GLN 62 138 138 GLN GLN C . n C 2 63 LYS 63 139 139 LYS LYS C . n C 2 64 GLU 64 140 140 GLU GLU C . n C 2 65 SER 65 141 141 SER SER C . n C 2 66 THR 66 142 142 THR THR C . n C 2 67 LEU 67 143 143 LEU LEU C . n C 2 68 HIS 68 144 144 HIS HIS C . n C 2 69 LEU 69 145 145 LEU LEU C . n C 2 70 VAL 70 146 146 VAL VAL C . n C 2 71 LEU 71 147 147 LEU LEU C . n C 2 72 ARG 72 148 148 ARG ARG C . n C 2 73 LEU 73 149 149 LEU LEU C . n C 2 74 ARG 74 150 150 ARG ARG C . n C 2 75 GLY 75 151 151 GLY GLY C . n C 2 76 GLY 76 152 152 GLY GLY C . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KDF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KDF _struct.title 'NMR structure of minor S5a (196-306):K48 linked diubiquitin species' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KDF _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;protein complex, ubiquitin interacting motifs, Cytoplasm, Nucleus, Phosphoprotein, Ubl conjugation, Alternative splicing, Proteasome, PROTEIN BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UBIQ_HUMAN P62988 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 ? 2 UNP PSMD4_HUMAN P55036 1 ;MLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGL PDLSSMTEEEQIAYAMQMSLQGAEFGQAESA ; 196 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KDF B 1 ? 76 ? P62988 1 ? 76 ? 1 76 2 1 2KDF C 1 ? 76 ? P62988 1 ? 76 ? 77 152 3 2 2KDF A 1 ? 111 ? P55036 196 ? 306 ? 196 306 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 14 ? ALA A 17 ? ASP A 209 ALA A 212 5 ? 4 HELX_P HELX_P2 2 ASP A 18 ? GLY A 52 ? ASP A 213 GLY A 247 1 ? 35 HELX_P HELX_P3 3 SER A 61 ? PHE A 75 ? SER A 256 PHE A 270 1 ? 15 HELX_P HELX_P4 4 THR A 87 ? GLN A 101 ? THR A 282 GLN A 296 1 ? 15 HELX_P HELX_P5 5 THR B 22 ? GLU B 34 ? THR B 22 GLU B 34 1 ? 13 HELX_P HELX_P6 6 LEU B 56 ? ASN B 60 ? LEU B 56 ASN B 60 5 ? 5 HELX_P HELX_P7 7 THR C 22 ? GLU C 34 ? THR C 98 GLU C 110 1 ? 13 HELX_P HELX_P8 8 PRO C 37 ? GLN C 41 ? PRO C 113 GLN C 117 5 ? 5 HELX_P HELX_P9 9 LEU C 56 ? ASN C 60 ? LEU C 132 ASN C 136 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 76 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 48 _struct_conn.ptnr2_label_atom_id NZ _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 76 _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 124 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.309 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id GLY _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 76 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LYS _pdbx_modification_feature.modified_residue_label_asym_id C _pdbx_modification_feature.modified_residue_label_seq_id 48 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id GLY _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 76 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LYS _pdbx_modification_feature.modified_residue_auth_asym_id C _pdbx_modification_feature.modified_residue_auth_seq_id 124 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C _pdbx_modification_feature.modified_residue_id_linking_atom NZ _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Isopeptide bond' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR B 12 ? GLU B 16 ? THR B 12 GLU B 16 A 2 GLN B 2 ? LYS B 6 ? GLN B 2 LYS B 6 A 3 THR B 66 ? LEU B 71 ? THR B 66 LEU B 71 A 4 GLN B 41 ? ILE B 44 ? GLN B 41 ILE B 44 B 1 THR C 12 ? GLU C 16 ? THR C 88 GLU C 92 B 2 GLN C 2 ? LYS C 6 ? GLN C 78 LYS C 82 B 3 THR C 66 ? VAL C 70 ? THR C 142 VAL C 146 B 4 ARG C 42 ? ILE C 44 ? ARG C 118 ILE C 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE B 13 ? O ILE B 13 N VAL B 5 ? N VAL B 5 A 2 3 N LYS B 6 ? N LYS B 6 O LEU B 69 ? O LEU B 69 A 3 4 O HIS B 68 ? O HIS B 68 N ILE B 44 ? N ILE B 44 B 1 2 O LEU C 15 ? O LEU C 91 N ILE C 3 ? N ILE C 79 B 2 3 N LYS C 6 ? N LYS C 82 O LEU C 69 ? O LEU C 145 B 3 4 O HIS C 68 ? O HIS C 144 N ILE C 44 ? N ILE C 120 # _pdbx_entry_details.entry_id 2KDF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 205 ? ? -159.08 35.00 2 1 PHE A 206 ? ? -166.93 -41.94 3 1 VAL A 208 ? ? -127.10 -59.83 4 1 ASP A 213 ? ? -171.12 118.44 5 1 ASP A 255 ? ? -154.33 46.18 6 1 PHE A 270 ? ? -118.02 55.54 7 1 THR A 273 ? ? -154.40 80.04 8 1 LEU A 275 ? ? -171.48 147.64 9 1 THR A 282 ? ? -74.75 -159.86 10 1 GLN A 296 ? ? -107.88 44.30 11 1 PHE A 300 ? ? -123.82 -60.46 12 1 GLN A 302 ? ? -97.60 38.99 13 1 ALA A 303 ? ? -142.02 31.21 14 1 THR B 7 ? ? -106.21 -164.79 15 1 LEU B 8 ? ? -98.02 31.94 16 1 VAL B 17 ? ? -127.43 -165.10 17 1 THR B 55 ? ? -108.54 -168.64 18 1 THR C 83 ? ? -128.30 -163.65 19 1 THR C 85 ? ? -145.48 27.89 20 1 THR C 131 ? ? -108.27 -169.13 21 2 GLU A 205 ? ? -141.13 31.40 22 2 PHE A 206 ? ? -154.31 -46.34 23 2 ASP A 213 ? ? -170.47 118.99 24 2 ILE A 248 ? ? -110.25 53.29 25 2 THR A 251 ? ? -123.66 -53.40 26 2 GLU A 254 ? ? -116.96 66.07 27 2 LEU A 275 ? ? -172.03 149.89 28 2 ALA A 298 ? ? -165.21 106.35 29 2 GLU A 299 ? ? 52.80 85.55 30 2 GLN A 302 ? ? -148.93 39.83 31 2 GLU A 304 ? ? -159.74 -46.90 32 2 THR B 7 ? ? -119.66 -165.07 33 2 THR B 9 ? ? -140.81 27.73 34 2 VAL B 17 ? ? -122.27 -163.17 35 2 THR B 55 ? ? -108.93 -169.06 36 2 GLN B 62 ? ? -117.94 -168.84 37 2 THR C 83 ? ? -121.94 -164.50 38 2 VAL C 93 ? ? -106.89 -163.41 39 3 PHE A 204 ? ? 53.61 95.74 40 3 PHE A 206 ? ? -148.76 -49.33 41 3 VAL A 208 ? ? -135.18 -56.03 42 3 ASP A 213 ? ? -166.03 117.15 43 3 ILE A 248 ? ? -100.45 71.11 44 3 ALA A 249 ? ? -162.21 -166.28 45 3 SER A 256 ? ? -96.27 33.79 46 3 THR A 273 ? ? -153.73 28.57 47 3 LEU A 275 ? ? -171.70 148.07 48 3 THR A 282 ? ? -72.71 -161.08 49 3 ALA A 298 ? ? -165.13 -77.00 50 3 GLU A 299 ? ? -118.63 51.73 51 3 ALA A 303 ? ? -140.56 35.62 52 3 THR B 7 ? ? -100.99 -167.02 53 3 LEU B 8 ? ? -98.05 31.65 54 3 THR C 83 ? ? -105.28 -166.09 55 3 VAL C 93 ? ? -120.56 -163.88 56 3 ARG C 150 ? ? -96.22 48.20 57 4 LEU A 199 ? ? -148.87 -51.04 58 4 PHE A 204 ? ? 52.68 86.53 59 4 PHE A 206 ? ? -148.83 -46.47 60 4 VAL A 208 ? ? -131.95 -65.85 61 4 ASP A 213 ? ? -172.72 119.31 62 4 ALA A 249 ? ? 53.69 -165.79 63 4 LEU A 275 ? ? -171.63 148.27 64 4 THR A 282 ? ? -74.48 -159.08 65 4 ALA A 298 ? ? -108.22 49.02 66 4 GLU A 299 ? ? -112.09 78.91 67 4 SER A 305 ? ? -89.87 -159.09 68 4 THR B 7 ? ? -111.43 -169.95 69 4 VAL B 17 ? ? -117.23 -162.89 70 4 GLN B 62 ? ? -118.82 -167.70 71 4 THR C 83 ? ? -119.84 -164.80 72 4 VAL C 93 ? ? -105.24 -162.08 73 4 THR C 131 ? ? -108.69 -168.36 74 5 LEU A 199 ? ? 53.08 90.73 75 5 VAL A 208 ? ? -126.67 -68.36 76 5 ASP A 213 ? ? -171.14 118.45 77 5 GLU A 245 ? ? -159.18 -44.04 78 5 THR A 251 ? ? -149.94 -46.55 79 5 GLU A 254 ? ? -103.02 48.90 80 5 SER A 256 ? ? -142.07 38.56 81 5 THR A 273 ? ? -154.04 41.89 82 5 LEU A 275 ? ? -171.64 148.38 83 5 THR A 282 ? ? -74.92 -162.75 84 5 GLU A 299 ? ? -158.71 82.79 85 5 GLN A 302 ? ? 52.98 85.88 86 5 ALA A 303 ? ? -163.90 -57.56 87 5 THR B 7 ? ? -122.68 -166.13 88 5 VAL B 17 ? ? -110.48 -162.41 89 5 THR B 55 ? ? -107.54 -169.07 90 5 GLN B 62 ? ? -108.79 -168.63 91 5 THR C 83 ? ? -100.90 -167.68 92 5 LEU C 84 ? ? -97.39 35.02 93 5 THR C 85 ? ? -143.90 28.11 94 5 GLN C 138 ? ? -100.88 -165.65 95 5 ARG C 150 ? ? -168.51 93.25 96 6 SER A 202 ? ? -165.95 -42.12 97 6 PHE A 204 ? ? -103.45 79.98 98 6 PHE A 206 ? ? -143.15 28.18 99 6 VAL A 208 ? ? -120.27 -54.92 100 6 ASP A 213 ? ? -171.18 117.73 101 6 THR A 253 ? ? -148.65 48.05 102 6 ASP A 255 ? ? -124.26 -51.56 103 6 THR A 273 ? ? -154.00 36.68 104 6 LEU A 275 ? ? -170.79 147.60 105 6 THR A 282 ? ? -74.02 -161.31 106 6 GLN A 296 ? ? -99.17 46.17 107 6 ALA A 298 ? ? -165.57 101.70 108 6 GLU A 299 ? ? -96.33 46.29 109 6 THR B 7 ? ? -120.77 -164.24 110 6 VAL B 17 ? ? -111.19 -161.78 111 6 THR B 55 ? ? -108.58 -169.32 112 6 GLN B 62 ? ? -119.33 -167.67 113 6 ARG B 74 ? ? -151.25 79.40 114 6 VAL C 93 ? ? -113.58 -161.89 115 6 THR C 131 ? ? -110.31 -168.98 116 7 PHE A 204 ? ? -153.58 72.45 117 7 PHE A 206 ? ? -153.68 -44.20 118 7 VAL A 208 ? ? -127.01 -54.11 119 7 ASP A 213 ? ? -170.66 116.34 120 7 ALA A 249 ? ? 52.53 95.55 121 7 THR A 250 ? ? -129.31 -75.94 122 7 PHE A 270 ? ? -117.36 50.03 123 7 THR A 273 ? ? -153.84 31.21 124 7 LEU A 275 ? ? -171.01 147.45 125 7 GLN A 296 ? ? -125.60 -60.51 126 7 SER A 305 ? ? -149.32 -59.87 127 7 THR B 7 ? ? -115.83 -169.55 128 7 VAL B 17 ? ? -121.47 -162.46 129 7 THR C 83 ? ? -109.62 -165.35 130 7 LEU C 84 ? ? -97.66 30.91 131 7 VAL C 93 ? ? -120.99 -162.53 132 7 THR C 131 ? ? -106.51 -169.34 133 7 GLN C 138 ? ? -109.38 -169.55 134 7 LEU C 149 ? ? -115.44 -169.20 135 7 ARG C 150 ? ? -126.94 -168.03 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 221 ? ? 0.317 'SIDE CHAIN' 2 1 ARG A 228 ? ? 0.230 'SIDE CHAIN' 3 1 ARG A 230 ? ? 0.278 'SIDE CHAIN' 4 1 ARG A 236 ? ? 0.305 'SIDE CHAIN' 5 1 ARG A 237 ? ? 0.314 'SIDE CHAIN' 6 1 ARG A 272 ? ? 0.214 'SIDE CHAIN' 7 1 ARG B 42 ? ? 0.289 'SIDE CHAIN' 8 1 ARG B 54 ? ? 0.317 'SIDE CHAIN' 9 1 ARG B 72 ? ? 0.317 'SIDE CHAIN' 10 1 ARG B 74 ? ? 0.314 'SIDE CHAIN' 11 1 ARG C 118 ? ? 0.281 'SIDE CHAIN' 12 1 ARG C 130 ? ? 0.317 'SIDE CHAIN' 13 1 ARG C 148 ? ? 0.244 'SIDE CHAIN' 14 1 ARG C 150 ? ? 0.318 'SIDE CHAIN' 15 2 ARG A 221 ? ? 0.249 'SIDE CHAIN' 16 2 ARG A 228 ? ? 0.258 'SIDE CHAIN' 17 2 ARG A 230 ? ? 0.234 'SIDE CHAIN' 18 2 ARG A 236 ? ? 0.226 'SIDE CHAIN' 19 2 ARG A 237 ? ? 0.296 'SIDE CHAIN' 20 2 ARG A 272 ? ? 0.311 'SIDE CHAIN' 21 2 ARG B 42 ? ? 0.312 'SIDE CHAIN' 22 2 ARG B 54 ? ? 0.279 'SIDE CHAIN' 23 2 ARG B 72 ? ? 0.317 'SIDE CHAIN' 24 2 ARG B 74 ? ? 0.233 'SIDE CHAIN' 25 2 ARG C 118 ? ? 0.215 'SIDE CHAIN' 26 2 ARG C 130 ? ? 0.261 'SIDE CHAIN' 27 2 ARG C 148 ? ? 0.231 'SIDE CHAIN' 28 2 ARG C 150 ? ? 0.223 'SIDE CHAIN' 29 3 ARG A 221 ? ? 0.318 'SIDE CHAIN' 30 3 ARG A 228 ? ? 0.251 'SIDE CHAIN' 31 3 ARG A 230 ? ? 0.315 'SIDE CHAIN' 32 3 ARG A 236 ? ? 0.275 'SIDE CHAIN' 33 3 ARG A 237 ? ? 0.230 'SIDE CHAIN' 34 3 ARG A 272 ? ? 0.316 'SIDE CHAIN' 35 3 ARG B 42 ? ? 0.223 'SIDE CHAIN' 36 3 ARG B 54 ? ? 0.288 'SIDE CHAIN' 37 3 ARG B 72 ? ? 0.290 'SIDE CHAIN' 38 3 ARG B 74 ? ? 0.308 'SIDE CHAIN' 39 3 ARG C 118 ? ? 0.317 'SIDE CHAIN' 40 3 ARG C 130 ? ? 0.306 'SIDE CHAIN' 41 3 ARG C 148 ? ? 0.315 'SIDE CHAIN' 42 3 ARG C 150 ? ? 0.298 'SIDE CHAIN' 43 4 ARG A 221 ? ? 0.266 'SIDE CHAIN' 44 4 ARG A 228 ? ? 0.273 'SIDE CHAIN' 45 4 ARG A 230 ? ? 0.317 'SIDE CHAIN' 46 4 ARG A 236 ? ? 0.223 'SIDE CHAIN' 47 4 ARG A 237 ? ? 0.280 'SIDE CHAIN' 48 4 ARG A 272 ? ? 0.309 'SIDE CHAIN' 49 4 ARG B 42 ? ? 0.266 'SIDE CHAIN' 50 4 ARG B 54 ? ? 0.212 'SIDE CHAIN' 51 4 ARG B 72 ? ? 0.243 'SIDE CHAIN' 52 4 ARG B 74 ? ? 0.315 'SIDE CHAIN' 53 4 ARG C 118 ? ? 0.268 'SIDE CHAIN' 54 4 ARG C 130 ? ? 0.289 'SIDE CHAIN' 55 4 ARG C 148 ? ? 0.235 'SIDE CHAIN' 56 4 ARG C 150 ? ? 0.231 'SIDE CHAIN' 57 5 ARG A 221 ? ? 0.282 'SIDE CHAIN' 58 5 ARG A 228 ? ? 0.303 'SIDE CHAIN' 59 5 ARG A 230 ? ? 0.290 'SIDE CHAIN' 60 5 ARG A 236 ? ? 0.288 'SIDE CHAIN' 61 5 ARG A 237 ? ? 0.272 'SIDE CHAIN' 62 5 ARG A 272 ? ? 0.284 'SIDE CHAIN' 63 5 ARG B 42 ? ? 0.318 'SIDE CHAIN' 64 5 ARG B 54 ? ? 0.235 'SIDE CHAIN' 65 5 ARG B 72 ? ? 0.277 'SIDE CHAIN' 66 5 ARG B 74 ? ? 0.260 'SIDE CHAIN' 67 5 ARG C 118 ? ? 0.309 'SIDE CHAIN' 68 5 ARG C 130 ? ? 0.292 'SIDE CHAIN' 69 5 ARG C 148 ? ? 0.243 'SIDE CHAIN' 70 5 ARG C 150 ? ? 0.286 'SIDE CHAIN' 71 6 ARG A 221 ? ? 0.263 'SIDE CHAIN' 72 6 ARG A 228 ? ? 0.301 'SIDE CHAIN' 73 6 ARG A 230 ? ? 0.280 'SIDE CHAIN' 74 6 ARG A 236 ? ? 0.216 'SIDE CHAIN' 75 6 ARG A 237 ? ? 0.316 'SIDE CHAIN' 76 6 ARG A 272 ? ? 0.316 'SIDE CHAIN' 77 6 ARG B 42 ? ? 0.290 'SIDE CHAIN' 78 6 ARG B 54 ? ? 0.229 'SIDE CHAIN' 79 6 ARG B 72 ? ? 0.311 'SIDE CHAIN' 80 6 ARG B 74 ? ? 0.233 'SIDE CHAIN' 81 6 ARG C 118 ? ? 0.233 'SIDE CHAIN' 82 6 ARG C 130 ? ? 0.305 'SIDE CHAIN' 83 6 ARG C 148 ? ? 0.233 'SIDE CHAIN' 84 6 ARG C 150 ? ? 0.317 'SIDE CHAIN' 85 7 ARG A 221 ? ? 0.318 'SIDE CHAIN' 86 7 ARG A 228 ? ? 0.312 'SIDE CHAIN' 87 7 ARG A 230 ? ? 0.255 'SIDE CHAIN' 88 7 ARG A 236 ? ? 0.270 'SIDE CHAIN' 89 7 ARG A 237 ? ? 0.280 'SIDE CHAIN' 90 7 ARG A 272 ? ? 0.270 'SIDE CHAIN' 91 7 ARG B 42 ? ? 0.317 'SIDE CHAIN' 92 7 ARG B 54 ? ? 0.279 'SIDE CHAIN' 93 7 ARG B 72 ? ? 0.310 'SIDE CHAIN' 94 7 ARG B 74 ? ? 0.284 'SIDE CHAIN' 95 7 ARG C 118 ? ? 0.240 'SIDE CHAIN' 96 7 ARG C 130 ? ? 0.249 'SIDE CHAIN' 97 7 ARG C 148 ? ? 0.223 'SIDE CHAIN' 98 7 ARG C 150 ? ? 0.228 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 7 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KDF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KDF _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.4 mM [U-100% 15N; U-50% 2H] S5a (196-306)-1, 1.2 mM K48 linked diubiquitin-2, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.5 mM [U-100% 13C] S5a (196-306)-3, 1.5 mM K48 linked diubiquitin-4, 100% D2O' 2 '100% D2O' ;0.5 mM [U-100% 13C of the proximal Ub; natural abundance of the distal subunit] K48 linked diubiquitin-5, 1.0 mM S5a (196-306)-6, 100% D2O ; 3 '100% D2O' ;0.5 mM [U-100% 13C of the distal subunit; natural abundance of the proximal Ub] K48 linked diubiquitin-7, 1.0 mM S5a (196-306)-8, 100% D2O ; 4 '100% D2O' ;0.4 mM [U-100% 13C] S5a (196-306)-9, 1.2 mM [U-100% 2H of the proximal Ub; natural abundance of the distal subunit] K48 linked diubiquitin-10, 100% D2O ; 5 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'S5a (196-306)-1' 0.4 ? mM '[U-100% 15N; U-50% 2H]' 1 'K48 linked diubiquitin-2' 1.2 ? mM ? 1 'S5a (196-306)-3' 0.5 ? mM '[U-100% 13C]' 2 'K48 linked diubiquitin-4' 1.5 ? mM ? 2 'K48 linked diubiquitin-5' 0.5 ? mM '[U-100% 13C of the proximal Ub; natural abundance of the distal subunit]' 3 'S5a (196-306)-6' 1.0 ? mM ? 3 'K48 linked diubiquitin-7' 0.5 ? mM '[U-100% 13C of the distal subunit; natural abundance of the proximal Ub]' 4 'S5a (196-306)-8' 1.0 ? mM ? 4 'S5a (196-306)-9' 0.4 ? mM '[U-100% 13C]' 5 'K48 linked diubiquitin-10' 1.2 ? mM '[U-100% 2H of the proximal Ub; natural abundance of the distal subunit]' 5 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 '20 mM NaPO4; 100 mM NaCl' 6.5 ambient ? 298 K 2 '20 mM NaPO4; 50 mM NaCl' 6.5 ambient ? 298 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 2 2 2 '3D 1H-13C NOESY' 2 3 3 '3D 13C-filtered 1H-13C NOESY' 2 4 4 '3D 13C-filtered 1H-13C NOESY' 2 5 5 '3D 13C-filtered 1H-13C NOESY' # _pdbx_nmr_refine.entry_id 2KDF _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 1 'Bartels et al.' 'data analysis' XEASY ? 2 Brunger 'structure solution' X-PLOR ? 3 Brunger refinement X-PLOR ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TYR N N N N 304 TYR CA C N S 305 TYR C C N N 306 TYR O O N N 307 TYR CB C N N 308 TYR CG C Y N 309 TYR CD1 C Y N 310 TYR CD2 C Y N 311 TYR CE1 C Y N 312 TYR CE2 C Y N 313 TYR CZ C Y N 314 TYR OH O N N 315 TYR OXT O N N 316 TYR H H N N 317 TYR H2 H N N 318 TYR HA H N N 319 TYR HB2 H N N 320 TYR HB3 H N N 321 TYR HD1 H N N 322 TYR HD2 H N N 323 TYR HE1 H N N 324 TYR HE2 H N N 325 TYR HH H N N 326 TYR HXT H N N 327 VAL N N N N 328 VAL CA C N S 329 VAL C C N N 330 VAL O O N N 331 VAL CB C N N 332 VAL CG1 C N N 333 VAL CG2 C N N 334 VAL OXT O N N 335 VAL H H N N 336 VAL H2 H N N 337 VAL HA H N N 338 VAL HB H N N 339 VAL HG11 H N N 340 VAL HG12 H N N 341 VAL HG13 H N N 342 VAL HG21 H N N 343 VAL HG22 H N N 344 VAL HG23 H N N 345 VAL HXT H N N 346 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TYR N CA sing N N 291 TYR N H sing N N 292 TYR N H2 sing N N 293 TYR CA C sing N N 294 TYR CA CB sing N N 295 TYR CA HA sing N N 296 TYR C O doub N N 297 TYR C OXT sing N N 298 TYR CB CG sing N N 299 TYR CB HB2 sing N N 300 TYR CB HB3 sing N N 301 TYR CG CD1 doub Y N 302 TYR CG CD2 sing Y N 303 TYR CD1 CE1 sing Y N 304 TYR CD1 HD1 sing N N 305 TYR CD2 CE2 doub Y N 306 TYR CD2 HD2 sing N N 307 TYR CE1 CZ doub Y N 308 TYR CE1 HE1 sing N N 309 TYR CE2 CZ sing Y N 310 TYR CE2 HE2 sing N N 311 TYR CZ OH sing N N 312 TYR OH HH sing N N 313 TYR OXT HXT sing N N 314 VAL N CA sing N N 315 VAL N H sing N N 316 VAL N H2 sing N N 317 VAL CA C sing N N 318 VAL CA CB sing N N 319 VAL CA HA sing N N 320 VAL C O doub N N 321 VAL C OXT sing N N 322 VAL CB CG1 sing N N 323 VAL CB CG2 sing N N 324 VAL CB HB sing N N 325 VAL CG1 HG11 sing N N 326 VAL CG1 HG12 sing N N 327 VAL CG1 HG13 sing N N 328 VAL CG2 HG21 sing N N 329 VAL CG2 HG22 sing N N 330 VAL CG2 HG23 sing N N 331 VAL OXT HXT sing N N 332 # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Varian INOVA 1 'Varian INOVA' 900 Varian INOVA 2 'Varian INOVA' # _atom_sites.entry_id 2KDF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_