data_2KDN # _entry.id 2KDN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2KDN RCSB RCSB100990 WWPDB D_1000100990 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id PlfaA.01650.a _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KDN _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-12 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Buchko, G.W.' 1 'Yee, A.' 2 'Semesi, A.' 3 'Hui, R.' 4 'Arrowsmith, C.H.' 5 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 6 # _citation.id primary _citation.title 'Solution-state NMR structure of the putative morphogene protein BolA (PFE0790c) from Plasmodium falciparum.' _citation.journal_abbrev 'Acta Crystallogr F Struct Biol Commun' _citation.journal_volume 71 _citation.page_first 514 _citation.page_last 521 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25945703 _citation.pdbx_database_id_DOI 10.1107/S2053230X1402799X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Buchko, G.W.' 1 primary 'Yee, A.' 2 primary 'Semesi, A.' 3 primary 'Myler, P.J.' 4 primary 'Arrowsmith, C.H.' 5 primary 'Hui, R.' 6 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Putative uncharacterized protein PFE0790c' _entity.formula_weight 12328.100 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGRENLYFQGHMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTIL KEELQNIHAFSMKCHTPLEYDKLKSKGS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGRENLYFQGHMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTIL KEELQNIHAFSMKCHTPLEYDKLKSKGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier PlfaA.01650.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 ARG n 1 15 GLU n 1 16 ASN n 1 17 LEU n 1 18 TYR n 1 19 PHE n 1 20 GLN n 1 21 GLY n 1 22 HIS n 1 23 MET n 1 24 CYS n 1 25 ILE n 1 26 GLN n 1 27 LYS n 1 28 VAL n 1 29 ILE n 1 30 GLU n 1 31 ASP n 1 32 LYS n 1 33 LEU n 1 34 SER n 1 35 SER n 1 36 ALA n 1 37 LEU n 1 38 LYS n 1 39 PRO n 1 40 THR n 1 41 PHE n 1 42 LEU n 1 43 GLU n 1 44 LEU n 1 45 VAL n 1 46 ASP n 1 47 LYS n 1 48 SER n 1 49 CYS n 1 50 GLY n 1 51 CYS n 1 52 GLY n 1 53 THR n 1 54 SER n 1 55 PHE n 1 56 ASP n 1 57 ALA n 1 58 VAL n 1 59 ILE n 1 60 VAL n 1 61 SER n 1 62 ASN n 1 63 ASN n 1 64 PHE n 1 65 GLU n 1 66 ASP n 1 67 LYS n 1 68 LYS n 1 69 LEU n 1 70 LEU n 1 71 ASP n 1 72 ARG n 1 73 HIS n 1 74 ARG n 1 75 LEU n 1 76 VAL n 1 77 ASN n 1 78 THR n 1 79 ILE n 1 80 LEU n 1 81 LYS n 1 82 GLU n 1 83 GLU n 1 84 LEU n 1 85 GLN n 1 86 ASN n 1 87 ILE n 1 88 HIS n 1 89 ALA n 1 90 PHE n 1 91 SER n 1 92 MET n 1 93 LYS n 1 94 CYS n 1 95 HIS n 1 96 THR n 1 97 PRO n 1 98 LEU n 1 99 GLU n 1 100 TYR n 1 101 ASP n 1 102 LYS n 1 103 LEU n 1 104 LYS n 1 105 SER n 1 106 LYS n 1 107 GLY n 1 108 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PFE0790c _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 3D7 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Plasmodium falciparum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 36329 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8I3V0_PLAF7 _struct_ref.pdbx_db_accession Q8I3V0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQNIHAFSMKCHTPLEYDK LKSK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KDN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 106 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8I3V0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 84 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KDN MET A 1 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 1 1 1 2KDN GLY A 2 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 2 2 1 2KDN SER A 3 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 3 3 1 2KDN SER A 4 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 4 4 1 2KDN HIS A 5 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 5 5 1 2KDN HIS A 6 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 6 6 1 2KDN HIS A 7 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 7 7 1 2KDN HIS A 8 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 8 8 1 2KDN HIS A 9 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 9 9 1 2KDN HIS A 10 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 10 10 1 2KDN SER A 11 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 11 11 1 2KDN SER A 12 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 12 12 1 2KDN GLY A 13 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 13 13 1 2KDN ARG A 14 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 14 14 1 2KDN GLU A 15 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 15 15 1 2KDN ASN A 16 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 16 16 1 2KDN LEU A 17 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 17 17 1 2KDN TYR A 18 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 18 18 1 2KDN PHE A 19 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 19 19 1 2KDN GLN A 20 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 20 20 1 2KDN GLY A 21 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 21 21 1 2KDN HIS A 22 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 22 22 1 2KDN GLY A 107 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 107 23 1 2KDN SER A 108 ? UNP Q8I3V0 ? ? 'EXPRESSION TAG' 108 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D HNCO' 1 2 1 '3D HNCACB' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCA' 1 5 1 '3D 1H-15N NOESY' 1 6 1 '3D HBHA(CO)NH' 1 7 1 '3D 1H-13C NOESY' 1 8 1 '3D C(CO)NH' 1 9 1 '3D H(CCO)NH' 1 10 1 '2D 1H-15N HSQC' 1 11 2 '2D 1H-13C HSQC' 1 12 1 '3D HCCH-TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 200 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1.5 mM [U-99% 13C; U-99% 15N] protein, 10 mM sodium phosphate, 200 mM sodium chloride, 10 mM DTT, 0.01 % sodium azide, 1 mM benzamidine, 93% H2O/7% D2O ; 1 '93% H2O/7% D2O' ;1.5 mM [U-7% 13C; U-99% 15N] protein, 10 mM sodium phosphate, 200 mM sodium chloride, 10 mM DTT, 0.01 % sodium azide, 1 mM benzamidine, 93% H2O/7% D2O ; 2 '93% H2O/7% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 750 Varian INOVA 2 'Varian INOVA' 800 Varian INOVA 3 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KDN _pdbx_nmr_refine.method 'torsion angle dynamics, molecular dynamics' _pdbx_nmr_refine.details ;Structure determination was performed iteratively using CYANA (Automated NOESY Assignments). A total of 20 structures out of 100 with lowest target function from the final CYANA calculation were taken and refined by restrained molecular dynamics/energy minimization in explicit water (CNS) after adding 15% to the upper boundary limit. The final set of structures contained no dihedral violations greater than 1 degree and only 4 distance violations total that were greater than 0.05 Angstrom. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KDN _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KDN _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, P. et al.' 'structure solution' CYANA 3.0 1 'Goddard, T. et al.' 'data analysis' SPARKY 3.110 2 'Goddard, T. et al.' 'peak picking' SPARKY 3.110 3 'Accelrys Software Inc.' processing Felix 2007 4 'Brunger, A. et al.' refinement CNS 1.1 5 'Brunger, A. et al.' 'structure solution' CNS 1.1 6 'Bhattacharya, A. et al.' 'data analysis' PSVS 1.3 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KDN _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KDN _struct.title 'Solution structure of PFE0790c, a putative bolA-like protein from the protozoan parasite Plasmodium falciparum.' _struct.pdbx_descriptor 'Putative uncharacterized protein PFE0790c' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KDN _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text ;NMR solution structure, SSGCID, Seattle Structural Genomics Center for Infectious Disease, structural genomics, malaria, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 24 ? LYS A 38 ? CYS A 24 LYS A 38 1 ? 15 HELX_P HELX_P2 2 ASN A 62 ? GLU A 65 ? ASN A 62 GLU A 65 5 ? 4 HELX_P HELX_P3 3 LYS A 68 ? LEU A 84 ? LYS A 68 LEU A 84 1 ? 17 HELX_P HELX_P4 4 GLN A 85 ? ILE A 87 ? GLN A 85 ILE A 87 5 ? 3 HELX_P HELX_P5 5 THR A 96 ? LYS A 106 ? THR A 96 LYS A 106 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 41 ? ASP A 46 ? PHE A 41 ASP A 46 A 2 PHE A 55 ? VAL A 60 ? PHE A 55 VAL A 60 A 3 PHE A 90 ? HIS A 95 ? PHE A 90 HIS A 95 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 45 ? N VAL A 45 O ASP A 56 ? O ASP A 56 A 2 3 N PHE A 55 ? N PHE A 55 O SER A 91 ? O SER A 91 # _atom_sites.entry_id 2KDN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 CYS 24 24 24 CYS CYS A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 SER 108 108 108 SER SER A . n # _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center SSGCID _pdbx_SG_project.project_name ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2015-05-06 4 'Structure model' 1 3 2015-05-13 5 'Structure model' 1 4 2015-05-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein 1.5 ? mM '[U-99% 13C; U-99% 15N]' 1 'sodium phosphate' 10 ? mM ? 1 'sodium chloride' 200 ? mM ? 1 DTT 10 ? mM ? 1 'sodium azide' 0.01 ? % ? 1 benzamidine 1 ? mM ? 1 protein 1.5 ? mM '[U-7% 13C; U-99% 15N]' 2 'sodium phosphate' 10 ? mM ? 2 'sodium chloride' 200 ? mM ? 2 DTT 10 ? mM ? 2 'sodium azide' 0.01 ? % ? 2 benzamidine 1 ? mM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KDN _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 60 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1619 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 425 _pdbx_nmr_constraints.NOE_long_range_total_count 319 _pdbx_nmr_constraints.NOE_medium_range_total_count 399 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 476 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 63 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 63 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 OD2 A ASP 66 ? ? HZ1 A LYS 68 ? ? 1.57 2 2 HG1 A THR 96 ? ? OE1 A GLU 99 ? ? 1.57 3 3 HZ2 A LYS 27 ? ? OE1 A GLU 30 ? ? 1.59 4 4 HZ3 A LYS 27 ? ? OE1 A GLU 30 ? ? 1.58 5 6 HD12 A ILE 59 ? ? HG A SER 61 ? ? 1.26 6 6 HE2 A HIS 6 ? ? OD1 A ASP 56 ? ? 1.58 7 7 HZ3 A LYS 27 ? ? OE1 A GLU 30 ? ? 1.53 8 8 HG1 A THR 96 ? ? OE1 A GLU 99 ? ? 1.57 9 9 HZ1 A LYS 27 ? ? OE1 A GLU 30 ? ? 1.58 10 10 OD2 A ASP 66 ? ? HZ1 A LYS 68 ? ? 1.55 11 10 HG1 A THR 96 ? ? OE1 A GLU 99 ? ? 1.58 12 10 HD1 A HIS 10 ? ? OD1 A ASP 31 ? ? 1.60 13 11 HZ2 A LYS 32 ? ? OE1 A GLU 83 ? ? 1.56 14 12 HZ3 A LYS 27 ? ? OE2 A GLU 30 ? ? 1.57 15 13 HG1 A THR 96 ? ? OE1 A GLU 99 ? ? 1.60 16 14 HE22 A GLN 26 ? ? HG A LEU 44 ? ? 1.34 17 14 HG1 A THR 96 ? ? OE1 A GLU 99 ? ? 1.56 18 15 HE2 A HIS 8 ? ? OE1 A GLU 30 ? ? 1.59 19 17 HZ3 A LYS 27 ? ? OD2 A ASP 31 ? ? 1.52 20 17 HZ1 A LYS 47 ? ? OD2 A ASP 56 ? ? 1.58 21 17 H1 A MET 1 ? ? OE2 A GLU 30 ? ? 1.60 22 18 HZ2 A LYS 32 ? ? OE1 A GLU 83 ? ? 1.57 23 19 HA A LEU 80 ? ? HB3 A GLU 83 ? ? 1.30 24 19 OD2 A ASP 66 ? ? HZ1 A LYS 68 ? ? 1.56 25 19 H2 A MET 1 ? ? O A SER 108 ? ? 1.57 26 20 HZ3 A LYS 27 ? ? OE2 A GLU 30 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 20 ? ? -82.98 31.31 2 1 LYS A 38 ? ? 49.55 76.39 3 1 LYS A 68 ? ? -69.50 89.79 4 2 HIS A 10 ? ? 63.56 72.74 5 2 GLU A 15 ? ? -88.98 36.24 6 2 MET A 23 ? ? 71.90 71.67 7 2 LYS A 38 ? ? 58.15 87.29 8 2 LYS A 106 ? ? -168.28 -41.97 9 3 SER A 11 ? ? -88.22 -146.53 10 3 LYS A 38 ? ? 65.16 74.77 11 3 SER A 105 ? ? -69.54 -71.30 12 4 GLU A 15 ? ? -119.48 61.55 13 4 LYS A 38 ? ? 56.92 83.94 14 4 SER A 105 ? ? -74.92 -75.47 15 5 ASN A 16 ? ? -68.72 2.21 16 5 LYS A 38 ? ? 60.99 78.78 17 5 CYS A 49 ? ? -105.41 -66.98 18 5 CYS A 51 ? ? 57.82 83.92 19 5 ASN A 63 ? ? -69.27 2.17 20 6 HIS A 7 ? ? 69.38 -52.79 21 6 HIS A 9 ? ? -84.54 -79.38 22 6 SER A 11 ? ? -105.05 -163.34 23 6 LYS A 38 ? ? 59.82 78.18 24 6 SER A 48 ? ? -172.68 98.91 25 6 ALA A 89 ? ? -162.32 102.00 26 7 GLU A 15 ? ? -145.65 36.63 27 7 HIS A 22 ? ? -102.32 -156.28 28 7 LYS A 38 ? ? 62.83 85.71 29 8 HIS A 9 ? ? -177.83 81.39 30 8 GLU A 15 ? ? -86.45 30.78 31 8 LYS A 38 ? ? 56.11 80.42 32 8 LYS A 106 ? ? -153.17 -44.38 33 9 HIS A 6 ? ? -81.58 30.68 34 9 HIS A 22 ? ? -159.06 64.37 35 9 LYS A 38 ? ? 55.57 88.46 36 9 THR A 53 ? ? 60.36 82.59 37 9 LYS A 106 ? ? -121.54 -56.54 38 10 HIS A 8 ? ? 69.43 -46.84 39 10 GLN A 20 ? ? -55.91 -78.37 40 10 LYS A 38 ? ? 61.12 68.07 41 10 SER A 48 ? ? -68.94 90.45 42 10 LYS A 67 ? ? 77.32 -13.82 43 10 LYS A 106 ? ? -132.92 -45.99 44 11 SER A 4 ? ? -177.84 111.92 45 11 ASN A 16 ? ? -59.32 -7.43 46 11 LYS A 38 ? ? 55.84 78.38 47 11 SER A 48 ? ? -67.01 83.88 48 11 ALA A 89 ? ? -162.15 105.94 49 11 LYS A 106 ? ? -153.13 -43.77 50 12 HIS A 8 ? ? -170.30 118.33 51 12 LYS A 38 ? ? 58.92 84.78 52 12 LYS A 47 ? ? -92.49 59.22 53 12 HIS A 88 ? ? -123.16 -73.85 54 12 ALA A 89 ? ? -104.91 57.72 55 13 HIS A 5 ? ? 31.94 45.98 56 13 HIS A 9 ? ? -176.16 118.82 57 13 SER A 12 ? ? 61.93 95.35 58 13 ASN A 16 ? ? -66.94 5.08 59 13 THR A 53 ? ? -64.33 98.02 60 13 LYS A 106 ? ? -134.38 -147.28 61 14 SER A 4 ? ? -81.83 37.63 62 14 HIS A 5 ? ? -57.53 107.55 63 14 SER A 11 ? ? 76.34 -50.11 64 14 GLN A 20 ? ? 73.47 -53.57 65 14 LYS A 38 ? ? 55.48 75.20 66 14 LYS A 47 ? ? -88.42 44.62 67 14 SER A 48 ? ? 65.56 75.69 68 14 THR A 53 ? ? -92.89 -87.65 69 15 SER A 3 ? ? -142.65 41.80 70 15 HIS A 5 ? ? -92.52 58.91 71 15 GLN A 20 ? ? -59.85 100.55 72 15 LYS A 38 ? ? 59.30 72.92 73 15 THR A 53 ? ? -119.59 52.87 74 15 ALA A 89 ? ? -161.08 108.41 75 16 HIS A 10 ? ? -170.48 133.42 76 16 SER A 11 ? ? -56.55 109.85 77 16 PHE A 19 ? ? -77.14 33.19 78 16 MET A 23 ? ? -58.02 100.52 79 16 LYS A 38 ? ? 58.01 81.22 80 16 LYS A 67 ? ? 78.61 -28.28 81 17 ARG A 14 ? ? -143.06 -34.35 82 17 LYS A 38 ? ? 51.01 75.30 83 17 CYS A 51 ? ? -78.46 38.85 84 18 GLU A 15 ? ? -91.15 30.20 85 18 GLN A 20 ? ? 72.65 -61.66 86 18 LYS A 38 ? ? 53.60 90.37 87 18 SER A 48 ? ? -79.92 27.93 88 18 LYS A 106 ? ? -144.74 -42.44 89 19 LYS A 38 ? ? 55.68 81.82 90 20 MET A 23 ? ? -66.95 96.31 91 20 LYS A 38 ? ? 56.67 75.12 92 20 LYS A 67 ? ? 53.60 13.85 #