data_2KDR # _entry.id 2KDR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KDR pdb_00002kdr 10.2210/pdb2kdr/pdb RCSB RCSB100994 ? ? WWPDB D_1000100994 ? ? BMRB 16122 ? 10.13018/BMR16122 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2023-06-14 5 'Structure model' 1 4 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Database references' 7 4 'Structure model' Other 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' pdbx_struct_assembly 6 3 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_database_status 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond 11 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 7 5 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.recvd_initial_deposition_date 2009-01-15 _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KDR _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2JXF PDB 'NS4B(40-69)' unspecified 16122 BMRB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Montserret, R.' 1 'Penin, F.' 2 # _citation.id primary _citation.title 'An amphipathic alpha-helix at the C terminus of hepatitis C virus nonstructural protein 4B mediates membrane association' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 11378 _citation.page_last 11384 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19692468 _citation.pdbx_database_id_DOI 10.1128/JVI.01122-09 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gouttenoire, J.' 1 ? primary 'Montserret, R.' 2 ? primary 'Kennel, A.' 3 ? primary 'Penin, F.' 4 ? primary 'Moradpour, D.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Non-structural protein 4B' _entity.formula_weight 3111.599 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 1938-1965' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NS4B, p27' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SDAAARVTAILSSLTVTQLLRRLHQWIS _entity_poly.pdbx_seq_one_letter_code_can SDAAARVTAILSSLTVTQLLRRLHQWIS _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 ALA n 1 4 ALA n 1 5 ALA n 1 6 ARG n 1 7 VAL n 1 8 THR n 1 9 ALA n 1 10 ILE n 1 11 LEU n 1 12 SER n 1 13 SER n 1 14 LEU n 1 15 THR n 1 16 VAL n 1 17 THR n 1 18 GLN n 1 19 LEU n 1 20 LEU n 1 21 ARG n 1 22 ARG n 1 23 LEU n 1 24 HIS n 1 25 GLN n 1 26 TRP n 1 27 ILE n 1 28 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Hepatitis C virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11103 _pdbx_entity_src_syn.details 'The peptide was synthesized by solid-phase synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER X . n A 1 2 ASP 2 2 2 ASP ASP X . n A 1 3 ALA 3 3 3 ALA ALA X . n A 1 4 ALA 4 4 4 ALA ALA X . n A 1 5 ALA 5 5 5 ALA ALA X . n A 1 6 ARG 6 6 6 ARG ARG X . n A 1 7 VAL 7 7 7 VAL VAL X . n A 1 8 THR 8 8 8 THR THR X . n A 1 9 ALA 9 9 9 ALA ALA X . n A 1 10 ILE 10 10 10 ILE ILE X . n A 1 11 LEU 11 11 11 LEU LEU X . n A 1 12 SER 12 12 12 SER SER X . n A 1 13 SER 13 13 13 SER SER X . n A 1 14 LEU 14 14 14 LEU LEU X . n A 1 15 THR 15 15 15 THR THR X . n A 1 16 VAL 16 16 16 VAL VAL X . n A 1 17 THR 17 17 17 THR THR X . n A 1 18 GLN 18 18 18 GLN GLN X . n A 1 19 LEU 19 19 19 LEU LEU X . n A 1 20 LEU 20 20 20 LEU LEU X . n A 1 21 ARG 21 21 21 ARG ARG X . n A 1 22 ARG 22 22 22 ARG ARG X . n A 1 23 LEU 23 23 23 LEU LEU X . n A 1 24 HIS 24 24 24 HIS HIS X . n A 1 25 GLN 25 25 25 GLN GLN X . n A 1 26 TRP 26 26 26 TRP TRP X . n A 1 27 ILE 27 27 27 ILE ILE X . n A 1 28 SER 28 28 28 SER SER X . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KDR _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KDR _struct.title 'Solution structure of HCV NS4B(227-254)' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KDR _struct_keywords.pdbx_keywords 'VIRAL PROTEIN, MEMBRANE PROTEIN' _struct_keywords.text ;HCV, NS4B, 227-254 segment, MEMBRANOUS WEB, REPLICATION COMPLEX, MEMBRANE, TRANSMEMBRANE, RNA-BINDING, PALMITATE, VIRAL PROTEIN, MEMBRANE PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POLG_HCVH _struct_ref.pdbx_db_accession P27958 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SDAAARVTAILSSLTVTQLLRRLHQWIS _struct_ref.pdbx_align_begin 1938 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KDR _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 28 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P27958 _struct_ref_seq.db_align_beg 1938 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1965 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 28 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id X _struct_conf.beg_auth_seq_id 2 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id X _struct_conf.end_auth_seq_id 28 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 ASP X 2 ? ? 53.84 80.13 2 8 ASP X 2 ? ? 55.85 82.28 3 10 ASP X 2 ? ? -149.68 50.21 4 18 ASP X 2 ? ? -129.71 -51.61 5 19 ASP X 2 ? ? -147.01 49.61 6 20 ASP X 2 ? ? 55.17 89.86 7 21 ASP X 2 ? ? -165.95 -52.24 8 26 ASP X 2 ? ? 31.77 52.46 9 27 ASP X 2 ? ? -117.87 64.37 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG X 6 ? ? 0.288 'SIDE CHAIN' 2 1 ARG X 21 ? ? 0.308 'SIDE CHAIN' 3 1 ARG X 22 ? ? 0.317 'SIDE CHAIN' 4 2 ARG X 6 ? ? 0.317 'SIDE CHAIN' 5 2 ARG X 21 ? ? 0.231 'SIDE CHAIN' 6 2 ARG X 22 ? ? 0.311 'SIDE CHAIN' 7 3 ARG X 6 ? ? 0.299 'SIDE CHAIN' 8 3 ARG X 21 ? ? 0.318 'SIDE CHAIN' 9 3 ARG X 22 ? ? 0.287 'SIDE CHAIN' 10 4 ARG X 6 ? ? 0.312 'SIDE CHAIN' 11 4 ARG X 21 ? ? 0.318 'SIDE CHAIN' 12 4 ARG X 22 ? ? 0.313 'SIDE CHAIN' 13 5 ARG X 6 ? ? 0.317 'SIDE CHAIN' 14 5 ARG X 21 ? ? 0.316 'SIDE CHAIN' 15 5 ARG X 22 ? ? 0.282 'SIDE CHAIN' 16 6 ARG X 6 ? ? 0.318 'SIDE CHAIN' 17 6 ARG X 21 ? ? 0.296 'SIDE CHAIN' 18 6 ARG X 22 ? ? 0.307 'SIDE CHAIN' 19 7 ARG X 6 ? ? 0.310 'SIDE CHAIN' 20 7 ARG X 21 ? ? 0.317 'SIDE CHAIN' 21 7 ARG X 22 ? ? 0.309 'SIDE CHAIN' 22 8 ARG X 6 ? ? 0.312 'SIDE CHAIN' 23 8 ARG X 21 ? ? 0.318 'SIDE CHAIN' 24 8 ARG X 22 ? ? 0.317 'SIDE CHAIN' 25 9 ARG X 6 ? ? 0.284 'SIDE CHAIN' 26 9 ARG X 21 ? ? 0.317 'SIDE CHAIN' 27 9 ARG X 22 ? ? 0.316 'SIDE CHAIN' 28 10 ARG X 6 ? ? 0.317 'SIDE CHAIN' 29 10 ARG X 21 ? ? 0.318 'SIDE CHAIN' 30 10 ARG X 22 ? ? 0.313 'SIDE CHAIN' 31 11 ARG X 6 ? ? 0.317 'SIDE CHAIN' 32 11 ARG X 21 ? ? 0.237 'SIDE CHAIN' 33 11 ARG X 22 ? ? 0.317 'SIDE CHAIN' 34 12 ARG X 6 ? ? 0.307 'SIDE CHAIN' 35 12 ARG X 21 ? ? 0.316 'SIDE CHAIN' 36 12 ARG X 22 ? ? 0.317 'SIDE CHAIN' 37 13 ARG X 6 ? ? 0.317 'SIDE CHAIN' 38 13 ARG X 21 ? ? 0.318 'SIDE CHAIN' 39 13 ARG X 22 ? ? 0.314 'SIDE CHAIN' 40 14 ARG X 6 ? ? 0.317 'SIDE CHAIN' 41 14 ARG X 21 ? ? 0.295 'SIDE CHAIN' 42 14 ARG X 22 ? ? 0.318 'SIDE CHAIN' 43 15 ARG X 6 ? ? 0.298 'SIDE CHAIN' 44 15 ARG X 21 ? ? 0.317 'SIDE CHAIN' 45 15 ARG X 22 ? ? 0.253 'SIDE CHAIN' 46 16 ARG X 6 ? ? 0.312 'SIDE CHAIN' 47 16 ARG X 21 ? ? 0.317 'SIDE CHAIN' 48 16 ARG X 22 ? ? 0.301 'SIDE CHAIN' 49 17 ARG X 6 ? ? 0.315 'SIDE CHAIN' 50 17 ARG X 21 ? ? 0.315 'SIDE CHAIN' 51 17 ARG X 22 ? ? 0.312 'SIDE CHAIN' 52 18 ARG X 6 ? ? 0.317 'SIDE CHAIN' 53 18 ARG X 21 ? ? 0.313 'SIDE CHAIN' 54 18 ARG X 22 ? ? 0.317 'SIDE CHAIN' 55 19 ARG X 6 ? ? 0.317 'SIDE CHAIN' 56 19 ARG X 21 ? ? 0.268 'SIDE CHAIN' 57 19 ARG X 22 ? ? 0.278 'SIDE CHAIN' 58 20 ARG X 6 ? ? 0.317 'SIDE CHAIN' 59 20 ARG X 21 ? ? 0.281 'SIDE CHAIN' 60 20 ARG X 22 ? ? 0.292 'SIDE CHAIN' 61 21 ARG X 6 ? ? 0.317 'SIDE CHAIN' 62 21 ARG X 21 ? ? 0.316 'SIDE CHAIN' 63 21 ARG X 22 ? ? 0.311 'SIDE CHAIN' 64 22 ARG X 6 ? ? 0.315 'SIDE CHAIN' 65 22 ARG X 21 ? ? 0.311 'SIDE CHAIN' 66 22 ARG X 22 ? ? 0.316 'SIDE CHAIN' 67 23 ARG X 6 ? ? 0.314 'SIDE CHAIN' 68 23 ARG X 21 ? ? 0.290 'SIDE CHAIN' 69 23 ARG X 22 ? ? 0.317 'SIDE CHAIN' 70 24 ARG X 6 ? ? 0.284 'SIDE CHAIN' 71 24 ARG X 21 ? ? 0.311 'SIDE CHAIN' 72 24 ARG X 22 ? ? 0.315 'SIDE CHAIN' 73 25 ARG X 6 ? ? 0.317 'SIDE CHAIN' 74 25 ARG X 21 ? ? 0.316 'SIDE CHAIN' 75 25 ARG X 22 ? ? 0.312 'SIDE CHAIN' 76 26 ARG X 6 ? ? 0.318 'SIDE CHAIN' 77 26 ARG X 21 ? ? 0.297 'SIDE CHAIN' 78 26 ARG X 22 ? ? 0.287 'SIDE CHAIN' 79 27 ARG X 6 ? ? 0.309 'SIDE CHAIN' 80 27 ARG X 21 ? ? 0.317 'SIDE CHAIN' 81 27 ARG X 22 ? ? 0.262 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 27 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KDR _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KDR _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.contents '2mM protein-1, 50% v/v Trifluoro Ethanol D2OH; 50% v/v H2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '50% v/v Trifluoro Ethanol D2OH; 50% v/v H2O' # _pdbx_nmr_exptl_sample.component protein-1 _pdbx_nmr_exptl_sample.concentration 2 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength none _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-13C HSQC' # _pdbx_nmr_refine.entry_id 2KDR _pdbx_nmr_refine.method 'distance geometry, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'data analysis' Sparky ? 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement XPLOR-NIH 2.21 2 Brunger 'structure solution' X-PLOR ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLN N N N N 57 GLN CA C N S 58 GLN C C N N 59 GLN O O N N 60 GLN CB C N N 61 GLN CG C N N 62 GLN CD C N N 63 GLN OE1 O N N 64 GLN NE2 N N N 65 GLN OXT O N N 66 GLN H H N N 67 GLN H2 H N N 68 GLN HA H N N 69 GLN HB2 H N N 70 GLN HB3 H N N 71 GLN HG2 H N N 72 GLN HG3 H N N 73 GLN HE21 H N N 74 GLN HE22 H N N 75 GLN HXT H N N 76 HIS N N N N 77 HIS CA C N S 78 HIS C C N N 79 HIS O O N N 80 HIS CB C N N 81 HIS CG C Y N 82 HIS ND1 N Y N 83 HIS CD2 C Y N 84 HIS CE1 C Y N 85 HIS NE2 N Y N 86 HIS OXT O N N 87 HIS H H N N 88 HIS H2 H N N 89 HIS HA H N N 90 HIS HB2 H N N 91 HIS HB3 H N N 92 HIS HD1 H N N 93 HIS HD2 H N N 94 HIS HE1 H N N 95 HIS HE2 H N N 96 HIS HXT H N N 97 ILE N N N N 98 ILE CA C N S 99 ILE C C N N 100 ILE O O N N 101 ILE CB C N S 102 ILE CG1 C N N 103 ILE CG2 C N N 104 ILE CD1 C N N 105 ILE OXT O N N 106 ILE H H N N 107 ILE H2 H N N 108 ILE HA H N N 109 ILE HB H N N 110 ILE HG12 H N N 111 ILE HG13 H N N 112 ILE HG21 H N N 113 ILE HG22 H N N 114 ILE HG23 H N N 115 ILE HD11 H N N 116 ILE HD12 H N N 117 ILE HD13 H N N 118 ILE HXT H N N 119 LEU N N N N 120 LEU CA C N S 121 LEU C C N N 122 LEU O O N N 123 LEU CB C N N 124 LEU CG C N N 125 LEU CD1 C N N 126 LEU CD2 C N N 127 LEU OXT O N N 128 LEU H H N N 129 LEU H2 H N N 130 LEU HA H N N 131 LEU HB2 H N N 132 LEU HB3 H N N 133 LEU HG H N N 134 LEU HD11 H N N 135 LEU HD12 H N N 136 LEU HD13 H N N 137 LEU HD21 H N N 138 LEU HD22 H N N 139 LEU HD23 H N N 140 LEU HXT H N N 141 SER N N N N 142 SER CA C N S 143 SER C C N N 144 SER O O N N 145 SER CB C N N 146 SER OG O N N 147 SER OXT O N N 148 SER H H N N 149 SER H2 H N N 150 SER HA H N N 151 SER HB2 H N N 152 SER HB3 H N N 153 SER HG H N N 154 SER HXT H N N 155 THR N N N N 156 THR CA C N S 157 THR C C N N 158 THR O O N N 159 THR CB C N R 160 THR OG1 O N N 161 THR CG2 C N N 162 THR OXT O N N 163 THR H H N N 164 THR H2 H N N 165 THR HA H N N 166 THR HB H N N 167 THR HG1 H N N 168 THR HG21 H N N 169 THR HG22 H N N 170 THR HG23 H N N 171 THR HXT H N N 172 TRP N N N N 173 TRP CA C N S 174 TRP C C N N 175 TRP O O N N 176 TRP CB C N N 177 TRP CG C Y N 178 TRP CD1 C Y N 179 TRP CD2 C Y N 180 TRP NE1 N Y N 181 TRP CE2 C Y N 182 TRP CE3 C Y N 183 TRP CZ2 C Y N 184 TRP CZ3 C Y N 185 TRP CH2 C Y N 186 TRP OXT O N N 187 TRP H H N N 188 TRP H2 H N N 189 TRP HA H N N 190 TRP HB2 H N N 191 TRP HB3 H N N 192 TRP HD1 H N N 193 TRP HE1 H N N 194 TRP HE3 H N N 195 TRP HZ2 H N N 196 TRP HZ3 H N N 197 TRP HH2 H N N 198 TRP HXT H N N 199 VAL N N N N 200 VAL CA C N S 201 VAL C C N N 202 VAL O O N N 203 VAL CB C N N 204 VAL CG1 C N N 205 VAL CG2 C N N 206 VAL OXT O N N 207 VAL H H N N 208 VAL H2 H N N 209 VAL HA H N N 210 VAL HB H N N 211 VAL HG11 H N N 212 VAL HG12 H N N 213 VAL HG13 H N N 214 VAL HG21 H N N 215 VAL HG22 H N N 216 VAL HG23 H N N 217 VAL HXT H N N 218 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 HIS N CA sing N N 73 HIS N H sing N N 74 HIS N H2 sing N N 75 HIS CA C sing N N 76 HIS CA CB sing N N 77 HIS CA HA sing N N 78 HIS C O doub N N 79 HIS C OXT sing N N 80 HIS CB CG sing N N 81 HIS CB HB2 sing N N 82 HIS CB HB3 sing N N 83 HIS CG ND1 sing Y N 84 HIS CG CD2 doub Y N 85 HIS ND1 CE1 doub Y N 86 HIS ND1 HD1 sing N N 87 HIS CD2 NE2 sing Y N 88 HIS CD2 HD2 sing N N 89 HIS CE1 NE2 sing Y N 90 HIS CE1 HE1 sing N N 91 HIS NE2 HE2 sing N N 92 HIS OXT HXT sing N N 93 ILE N CA sing N N 94 ILE N H sing N N 95 ILE N H2 sing N N 96 ILE CA C sing N N 97 ILE CA CB sing N N 98 ILE CA HA sing N N 99 ILE C O doub N N 100 ILE C OXT sing N N 101 ILE CB CG1 sing N N 102 ILE CB CG2 sing N N 103 ILE CB HB sing N N 104 ILE CG1 CD1 sing N N 105 ILE CG1 HG12 sing N N 106 ILE CG1 HG13 sing N N 107 ILE CG2 HG21 sing N N 108 ILE CG2 HG22 sing N N 109 ILE CG2 HG23 sing N N 110 ILE CD1 HD11 sing N N 111 ILE CD1 HD12 sing N N 112 ILE CD1 HD13 sing N N 113 ILE OXT HXT sing N N 114 LEU N CA sing N N 115 LEU N H sing N N 116 LEU N H2 sing N N 117 LEU CA C sing N N 118 LEU CA CB sing N N 119 LEU CA HA sing N N 120 LEU C O doub N N 121 LEU C OXT sing N N 122 LEU CB CG sing N N 123 LEU CB HB2 sing N N 124 LEU CB HB3 sing N N 125 LEU CG CD1 sing N N 126 LEU CG CD2 sing N N 127 LEU CG HG sing N N 128 LEU CD1 HD11 sing N N 129 LEU CD1 HD12 sing N N 130 LEU CD1 HD13 sing N N 131 LEU CD2 HD21 sing N N 132 LEU CD2 HD22 sing N N 133 LEU CD2 HD23 sing N N 134 LEU OXT HXT sing N N 135 SER N CA sing N N 136 SER N H sing N N 137 SER N H2 sing N N 138 SER CA C sing N N 139 SER CA CB sing N N 140 SER CA HA sing N N 141 SER C O doub N N 142 SER C OXT sing N N 143 SER CB OG sing N N 144 SER CB HB2 sing N N 145 SER CB HB3 sing N N 146 SER OG HG sing N N 147 SER OXT HXT sing N N 148 THR N CA sing N N 149 THR N H sing N N 150 THR N H2 sing N N 151 THR CA C sing N N 152 THR CA CB sing N N 153 THR CA HA sing N N 154 THR C O doub N N 155 THR C OXT sing N N 156 THR CB OG1 sing N N 157 THR CB CG2 sing N N 158 THR CB HB sing N N 159 THR OG1 HG1 sing N N 160 THR CG2 HG21 sing N N 161 THR CG2 HG22 sing N N 162 THR CG2 HG23 sing N N 163 THR OXT HXT sing N N 164 TRP N CA sing N N 165 TRP N H sing N N 166 TRP N H2 sing N N 167 TRP CA C sing N N 168 TRP CA CB sing N N 169 TRP CA HA sing N N 170 TRP C O doub N N 171 TRP C OXT sing N N 172 TRP CB CG sing N N 173 TRP CB HB2 sing N N 174 TRP CB HB3 sing N N 175 TRP CG CD1 doub Y N 176 TRP CG CD2 sing Y N 177 TRP CD1 NE1 sing Y N 178 TRP CD1 HD1 sing N N 179 TRP CD2 CE2 doub Y N 180 TRP CD2 CE3 sing Y N 181 TRP NE1 CE2 sing Y N 182 TRP NE1 HE1 sing N N 183 TRP CE2 CZ2 sing Y N 184 TRP CE3 CZ3 doub Y N 185 TRP CE3 HE3 sing N N 186 TRP CZ2 CH2 doub Y N 187 TRP CZ2 HZ2 sing N N 188 TRP CZ3 CH2 sing Y N 189 TRP CZ3 HZ3 sing N N 190 TRP CH2 HH2 sing N N 191 TRP OXT HXT sing N N 192 VAL N CA sing N N 193 VAL N H sing N N 194 VAL N H2 sing N N 195 VAL CA C sing N N 196 VAL CA CB sing N N 197 VAL CA HA sing N N 198 VAL C O doub N N 199 VAL C OXT sing N N 200 VAL CB CG1 sing N N 201 VAL CB CG2 sing N N 202 VAL CB HB sing N N 203 VAL CG1 HG11 sing N N 204 VAL CG1 HG12 sing N N 205 VAL CG1 HG13 sing N N 206 VAL CG2 HG21 sing N N 207 VAL CG2 HG22 sing N N 208 VAL CG2 HG23 sing N N 209 VAL OXT HXT sing N N 210 # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2KDR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_