HEADER SIGNALING PROTEIN 22-FEB-09 2KFJ TITLE SOLUTION STRUCTURE OF THE LOOP DELETION MUTANT OF PB1 DOMAIN OF CDC24P COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PB1 DOMAIN; COMPND 5 SYNONYM: CALCIUM REGULATORY PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CDC24, CLS4, YAL041W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P KEYWDS PB1, CDC24P, YEAST, GUANINE-NUCLEOTIDE RELEASING FACTOR, KEYWDS 2 PHOSPHOPROTEIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.OGURA,T.TANDAI,S.YOSHINAGA,Y.KOBASHIGAWA,H.KUMETA,F.INAGAKI REVDAT 3 29-MAY-24 2KFJ 1 REMARK REVDAT 2 16-MAR-22 2KFJ 1 REMARK SEQADV REVDAT 1 06-OCT-09 2KFJ 0 JRNL AUTH K.OGURA,T.TANDAI,S.YOSHINAGA,Y.KOBASHIGAWA,H.KUMETA,T.ITO, JRNL AUTH 2 H.SUMIMOTO,F.INAGAKI JRNL TITL NMR STRUCTURE OF THE HETERODIMER OF BEM1 AND CDC24 PB1 JRNL TITL 2 DOMAINS FROM SACCHAROMYCES CEREVISIAE JRNL REF J.BIOCHEM. V. 146 317 2009 JRNL REFN ISSN 0021-924X JRNL PMID 19451149 JRNL DOI 10.1093/JB/MVP075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0, CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000101058. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM [U-99% 13C; U-99% 15N] PB1 REMARK 210 -DOMAIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-15N HSQC; 3D HNCO; REMARK 210 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 13 18.59 -144.68 REMARK 500 1 ASN A 25 -178.89 -50.77 REMARK 500 1 ASP A 27 -72.89 -66.03 REMARK 500 1 SER A 43 97.40 -170.17 REMARK 500 1 PRO A 44 -162.23 -74.94 REMARK 500 2 LEU A 2 -74.73 -93.58 REMARK 500 2 SER A 4 -173.53 -170.94 REMARK 500 2 SER A 13 14.99 89.90 REMARK 500 2 TRP A 24 153.94 -45.77 REMARK 500 2 ASP A 27 -73.87 -74.85 REMARK 500 2 SER A 43 142.03 159.61 REMARK 500 2 PRO A 44 -161.96 -75.04 REMARK 500 3 SER A 13 12.43 90.19 REMARK 500 3 GLU A 14 -166.71 -101.27 REMARK 500 3 SER A 38 -30.11 -39.35 REMARK 500 3 HIS A 41 43.36 -99.99 REMARK 500 3 SER A 43 95.23 -175.27 REMARK 500 3 PRO A 44 -162.19 -74.97 REMARK 500 3 THR A 46 36.36 -99.51 REMARK 500 4 ARG A 8 77.38 -106.25 REMARK 500 4 ILE A 9 108.77 -47.16 REMARK 500 4 LEU A 18 119.81 -165.39 REMARK 500 4 TRP A 24 100.47 -58.50 REMARK 500 4 ASN A 25 -174.55 -55.26 REMARK 500 4 SER A 43 141.31 159.88 REMARK 500 4 PRO A 44 -162.23 -75.03 REMARK 500 5 ASN A 12 -29.08 -39.65 REMARK 500 5 SER A 13 -95.47 -72.86 REMARK 500 5 TRP A 24 93.06 -54.51 REMARK 500 5 ASN A 25 176.90 -51.40 REMARK 500 5 ASP A 27 -71.99 -62.91 REMARK 500 5 HIS A 41 31.09 -92.55 REMARK 500 5 SER A 43 93.83 174.04 REMARK 500 5 PRO A 44 -162.20 -75.03 REMARK 500 6 ASN A 12 -29.50 -39.11 REMARK 500 6 SER A 13 -76.18 -71.80 REMARK 500 6 GLU A 14 -159.11 -170.08 REMARK 500 6 TRP A 24 105.41 -58.31 REMARK 500 6 ASN A 25 -178.68 -62.89 REMARK 500 6 ASP A 27 -73.00 -66.89 REMARK 500 6 SER A 38 -34.09 -39.50 REMARK 500 6 SER A 43 93.85 -175.19 REMARK 500 6 PRO A 44 -162.22 -74.96 REMARK 500 6 THR A 46 35.04 -91.63 REMARK 500 7 ASN A 12 -29.22 -39.77 REMARK 500 7 SER A 13 -95.67 -73.35 REMARK 500 7 TRP A 24 94.49 -55.94 REMARK 500 7 ASN A 25 176.05 -53.80 REMARK 500 7 SER A 43 141.40 159.85 REMARK 500 7 PRO A 44 -162.22 -74.95 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q1O RELATED DB: PDB DBREF 2KFJ A 4 86 UNP P11433 CDC24_YEAST 761 854 SEQADV 2KFJ GLY A 0 UNP P11433 EXPRESSION TAG SEQADV 2KFJ PRO A 1 UNP P11433 EXPRESSION TAG SEQADV 2KFJ LEU A 2 UNP P11433 EXPRESSION TAG SEQADV 2KFJ GLY A 3 UNP P11433 EXPRESSION TAG SEQADV 2KFJ A UNP P11433 ASN 770 DELETION SEQADV 2KFJ A UNP P11433 ASN 771 DELETION SEQADV 2KFJ A UNP P11433 SER 772 DELETION SEQADV 2KFJ A UNP P11433 ASN 773 DELETION SEQADV 2KFJ A UNP P11433 ASN 774 DELETION SEQADV 2KFJ A UNP P11433 THR 775 DELETION SEQADV 2KFJ A UNP P11433 SER 776 DELETION SEQADV 2KFJ A UNP P11433 SER 777 DELETION SEQADV 2KFJ A UNP P11433 ASN 807 DELETION SEQADV 2KFJ A UNP P11433 ASN 808 DELETION SEQADV 2KFJ A UNP P11433 ASN 809 DELETION SEQRES 1 A 87 GLY PRO LEU GLY SER ILE LEU PHE ARG ILE SER TYR ASN SEQRES 2 A 87 SER GLU ILE PHE THR LEU LEU VAL GLU LYS VAL TRP ASN SEQRES 3 A 87 PHE ASP ASP LEU ILE MET ALA ILE ASN SER LYS ILE SER SEQRES 4 A 87 ASN THR HIS ILE SER PRO ILE THR LYS ILE LYS TYR GLN SEQRES 5 A 87 ASP GLU ASP GLY ASP PHE VAL VAL LEU GLY SER ASP GLU SEQRES 6 A 87 ASP TRP ASN VAL ALA LYS GLU MET LEU ALA GLU ASN ASN SEQRES 7 A 87 GLU LYS PHE LEU ASN ILE ARG LEU TYR HELIX 1 1 ASN A 25 ILE A 37 1 13 HELIX 2 2 SER A 38 THR A 40 5 3 HELIX 3 3 SER A 62 ASN A 77 1 16 SHEET 1 A 5 ILE A 15 GLU A 21 0 SHEET 2 A 5 SER A 4 SER A 10 -1 N PHE A 7 O LEU A 18 SHEET 3 A 5 PHE A 80 ARG A 84 1 O ILE A 83 N SER A 10 SHEET 4 A 5 ILE A 48 GLN A 51 -1 N GLN A 51 O ASN A 82 SHEET 5 A 5 PHE A 57 LEU A 60 -1 O VAL A 58 N TYR A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1