HEADER SIGNALING PROTEIN 23-FEB-09 2KFK TITLE SOLUTION STRUCTURE OF BEM1P PB1 DOMAIN COMPLEXED WITH CDC24P PB1 TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUD EMERGENCE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 477-551; COMPND 5 SYNONYM: SUPPRESSOR OF RHO3 PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CELL DIVISION CONTROL PROTEIN 24; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 761-854; COMPND 11 SYNONYM: CALCIUM REGULATORY PROTEIN; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS PB1, BUDDING, YEAST, PHOX, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.KOBASHIGAWA,S.YOSHINAGA,T.TANDAI,K.OGURA,F.INAGAKI REVDAT 3 29-MAY-24 2KFK 1 REMARK REVDAT 2 16-MAR-22 2KFK 1 REMARK SEQADV REVDAT 1 06-OCT-09 2KFK 0 JRNL AUTH K.OGURA,T.TANDAI,S.YOSHINAGA,Y.KOBASHIGAWA,H.KUMETA,T.ITO, JRNL AUTH 2 H.SUMIMOTO,F.INAGAKI JRNL TITL NMR STRUCTURE OF THE HETERODIMER OF BEM1 AND CDC24 PB1 JRNL TITL 2 DOMAINS FROM SACCHAROMYCES CEREVISIAE JRNL REF J.BIOCHEM. V. 146 317 2009 JRNL REFN ISSN 0021-924X JRNL PMID 19451149 JRNL DOI 10.1093/JB/MVP075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000101059. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-98% 13C; U-98% 15N] BEM1P REMARK 210 -1, 1MM CDC24P-2, 90% H2O/10% REMARK 210 D2O; 1MM BEM1P-3, 1MM [U-98% 13C; REMARK 210 U-98% 15N] CDC24P-4, 90% H2O/10% REMARK 210 D2O; 1MM BEM1P-5, 1MM [U-2H] REMARK 210 CDC24P-6, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TYR A 12 O ASP A 15 1.53 REMARK 500 O GLN A 46 H SER A 74 1.55 REMARK 500 O LEU B 129 H ILE B 133 1.55 REMARK 500 O ILE B 109 H PHE B 116 1.56 REMARK 500 H ILE B 109 O PHE B 116 1.56 REMARK 500 O ILE B 133 H ILE B 137 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 -43.16 -168.26 REMARK 500 1 MET A 3 89.30 -169.64 REMARK 500 1 LYS A 13 -75.34 57.21 REMARK 500 1 ASP A 14 19.55 -142.57 REMARK 500 1 ASP A 24 12.44 -142.86 REMARK 500 1 ILE A 38 -168.36 -69.79 REMARK 500 1 PHE A 50 -34.29 -35.50 REMARK 500 1 GLN A 62 -64.24 -95.84 REMARK 500 1 ASN B 112 -115.70 72.82 REMARK 500 1 PHE B 126 -27.25 -39.76 REMARK 500 1 ASP B 127 -88.57 -68.51 REMARK 500 1 ASP B 128 -53.69 -25.22 REMARK 500 1 HIS B 141 68.01 69.45 REMARK 500 1 ILE B 142 -49.09 -159.82 REMARK 500 1 SER B 143 155.52 178.65 REMARK 500 1 ILE B 145 166.97 57.22 REMARK 500 1 THR B 146 2.98 -151.58 REMARK 500 1 LYS B 179 28.00 81.64 REMARK 500 2 HIS A 2 -7.49 80.22 REMARK 500 2 MET A 3 65.51 29.12 REMARK 500 2 LYS A 13 -76.03 55.91 REMARK 500 2 ASP A 14 18.85 -141.18 REMARK 500 2 ILE A 38 -167.79 -70.73 REMARK 500 2 PHE A 50 -34.26 -35.54 REMARK 500 2 ILE A 57 99.27 -68.78 REMARK 500 2 GLN A 62 -64.08 -94.95 REMARK 500 2 ASN B 112 -117.24 71.86 REMARK 500 2 ASP B 127 -88.67 -65.43 REMARK 500 2 ASP B 128 -49.75 -23.94 REMARK 500 2 SER B 138 -17.27 -47.24 REMARK 500 2 ASN B 139 -7.51 -59.98 REMARK 500 2 ILE B 142 -47.20 -164.35 REMARK 500 2 SER B 143 165.08 174.01 REMARK 500 2 ILE B 145 162.55 58.87 REMARK 500 2 THR B 146 -22.60 -151.22 REMARK 500 2 ASN B 177 29.40 45.48 REMARK 500 3 HIS A 2 94.96 59.70 REMARK 500 3 MET A 3 88.39 -167.32 REMARK 500 3 LYS A 13 -76.05 57.72 REMARK 500 3 ASP A 14 19.43 -141.72 REMARK 500 3 ASP A 24 12.86 -143.53 REMARK 500 3 ILE A 38 -168.52 -70.67 REMARK 500 3 PHE A 50 -34.74 -35.34 REMARK 500 3 GLN A 62 -63.50 -95.67 REMARK 500 3 ASN B 112 -114.82 71.59 REMARK 500 3 PHE B 126 -36.14 -35.26 REMARK 500 3 ASP B 127 -89.01 -65.58 REMARK 500 3 ASP B 128 -51.50 -23.58 REMARK 500 3 ILE B 142 -103.66 -93.46 REMARK 500 3 ILE B 145 166.05 60.09 REMARK 500 REMARK 500 THIS ENTRY HAS 346 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KFK A 4 78 UNP P29366 BEM1_YEAST 477 551 DBREF 2KFK B 104 186 UNP P11433 CDC24_YEAST 761 854 SEQADV 2KFK PRO A 1 UNP P29366 EXPRESSION TAG SEQADV 2KFK HIS A 2 UNP P29366 EXPRESSION TAG SEQADV 2KFK MET A 3 UNP P29366 EXPRESSION TAG SEQADV 2KFK PRO B 101 UNP P11433 EXPRESSION TAG SEQADV 2KFK LEU B 102 UNP P11433 EXPRESSION TAG SEQADV 2KFK GLY B 103 UNP P11433 EXPRESSION TAG SEQADV 2KFK B UNP P11433 ASN 770 DELETION SEQADV 2KFK B UNP P11433 ASN 771 DELETION SEQADV 2KFK B UNP P11433 SER 772 DELETION SEQADV 2KFK B UNP P11433 ASN 773 DELETION SEQADV 2KFK B UNP P11433 ASN 774 DELETION SEQADV 2KFK B UNP P11433 THR 775 DELETION SEQADV 2KFK B UNP P11433 SER 776 DELETION SEQADV 2KFK B UNP P11433 SER 777 DELETION SEQADV 2KFK B UNP P11433 ASN 807 DELETION SEQADV 2KFK B UNP P11433 ASN 808 DELETION SEQADV 2KFK B UNP P11433 ASN 809 DELETION SEQRES 1 A 78 PRO HIS MET LYS THR THR LYS ILE LYS PHE TYR TYR LYS SEQRES 2 A 78 ASP ASP ILE PHE ALA LEU MET LEU LYS GLY ASP THR THR SEQRES 3 A 78 TYR LYS GLU LEU ARG SER LYS ILE ALA PRO ARG ILE ASP SEQRES 4 A 78 THR ASP ASN PHE LYS LEU GLN THR LYS LEU PHE ASP GLY SEQRES 5 A 78 SER GLY GLU GLU ILE LYS THR ASP SER GLN VAL SER ASN SEQRES 6 A 78 ILE ILE GLN ALA LYS LEU LYS ILE SER VAL HIS ASP ILE SEQRES 1 B 86 PRO LEU GLY SER ILE LEU PHE ARG ILE SER TYR ASN SER SEQRES 2 B 86 GLU ILE PHE THR LEU LEU VAL GLU LYS VAL TRP ASN PHE SEQRES 3 B 86 ASP ASP LEU ILE MET ALA ILE ASN SER LYS ILE SER ASN SEQRES 4 B 86 THR HIS ILE SER PRO ILE THR LYS ILE LYS TYR GLN ASP SEQRES 5 B 86 GLU ASP GLY ASP PHE VAL VAL LEU GLY SER ASP GLU ASP SEQRES 6 B 86 TRP ASN VAL ALA LYS GLU MET LEU ALA GLU ASN ASN GLU SEQRES 7 B 86 LYS PHE LEU ASN ILE ARG LEU TYR HELIX 1 1 THR A 26 ALA A 35 1 10 HELIX 2 2 THR A 59 LYS A 70 1 12 HELIX 3 3 ASN B 125 SER B 138 1 14 HELIX 4 4 ASN B 139 HIS B 141 5 3 HELIX 5 5 SER B 162 GLU B 175 1 14 SHEET 1 A 2 THR A 6 TYR A 12 0 SHEET 2 A 2 ASP A 15 LEU A 21 -1 O ASP A 15 N TYR A 12 SHEET 1 B 2 PHE A 43 THR A 47 0 SHEET 2 B 2 ILE A 73 ASP A 77 -1 O SER A 74 N GLN A 46 SHEET 1 C 5 PHE B 116 GLU B 121 0 SHEET 2 C 5 SER B 104 TYR B 111 -1 N ILE B 109 O PHE B 116 SHEET 3 C 5 PHE B 180 LEU B 185 1 O ILE B 183 N ARG B 108 SHEET 4 C 5 ILE B 148 GLN B 151 -1 N GLN B 151 O ASN B 182 SHEET 5 C 5 PHE B 157 LEU B 160 -1 O VAL B 158 N TYR B 150 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1