HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-FEB-09 2KFP TITLE SOLUTION NMR STRUCTURE OF PSPTO_3016 FROM PSEUDOMONAS SYRINGAE. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PSR293. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSPTO_3016 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 3 ORGANISM_TAXID: 323; SOURCE 4 GENE: PSPTO3016, PSPTO_3016; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS ALPHA, BETA, DOUBLE-WING, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.A.FELDMANN,T.A.RAMELOT,L.ZHAO,K.HAMILTON,C.CICCOSANTI,R.XIAO, AUTHOR 2 R.NAIR,J.K.EVERETT,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2KFP 1 REMARK REVDAT 3 26-FEB-20 2KFP 1 REMARK SEQADV REVDAT 2 17-OCT-12 2KFP 1 JRNL VERSN REVDAT 1 24-MAR-09 2KFP 0 JRNL AUTH E.A.FELDMANN,J.SEETHARAMAN,T.A.RAMELOT,S.LEW,L.ZHAO, JRNL AUTH 2 K.HAMILTON,C.CICCOSANTI,R.XIAO,T.B.ACTON,J.K.EVERETT,L.TONG, JRNL AUTH 3 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL SOLUTION NMR AND X-RAY CRYSTAL STRUCTURES OF PSEUDOMONAS JRNL TITL 2 SYRINGAE PSPTO_3016 FROM PROTEIN DOMAIN FAMILY PF04237 JRNL TITL 3 (DUF419) ADOPT A "DOUBLE WING" DNA BINDING MOTIF. JRNL REF J.STRUCT.FUNCT.GENOM. V. 13 155 2012 JRNL REFN ISSN 1345-711X JRNL PMID 22865330 JRNL DOI 10.1007/S10969-012-9140-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, PSVS 1.3 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BHATTACHARYA AND MONTELIONE (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH, XPLOR-NIH HBDA TORSION ANGLE REMARK 3 REFINEMENT REMARK 4 REMARK 4 2KFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000101063. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : .1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM AMMONIUM ACETATE, REMARK 210 100 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 5 MM CALCIUM CHLORIDE, 0.02 REMARK 210 % SODIUM AZIDE, 50 UM DSS, 90% REMARK 210 H2O/10% D2O; 1.1 MM [U-5% 13C; U- REMARK 210 100% 15N] PROTEIN, 20 MM REMARK 210 AMMONIUM ACETATE, 100 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 5 MM REMARK 210 CALCIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 50 UM DSS, 90% H2O/10% REMARK 210 D2O; 1.0 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 20 MM AMMONIUM REMARK 210 ACETATE, 100 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 5 MM CALCIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 50 UM DSS, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 4D CC NOESY; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 3D HN(CO)CA; 3D C(CO) REMARK 210 NH; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.3, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, PSVS 1.3, REMARK 210 AUTOASSIGN 2.3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 120 H HIS A 121 1.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 15 34.55 37.40 REMARK 500 1 ASP A 37 134.92 57.73 REMARK 500 1 LYS A 38 102.20 82.41 REMARK 500 1 HIS A 85 -168.34 -79.90 REMARK 500 1 LYS A 88 -61.06 -165.31 REMARK 500 1 GLU A 119 75.69 56.99 REMARK 500 1 HIS A 122 83.78 -174.37 REMARK 500 2 TYR A 14 -21.68 -144.61 REMARK 500 2 ASN A 36 31.76 -95.01 REMARK 500 2 ASP A 37 83.50 -48.38 REMARK 500 2 LYS A 38 -22.87 -147.32 REMARK 500 2 ASN A 54 87.00 -65.77 REMARK 500 2 ALA A 83 65.18 -66.17 REMARK 500 2 TYR A 84 -83.47 50.84 REMARK 500 2 HIS A 85 -7.66 -174.97 REMARK 500 2 ASN A 87 -74.65 -119.61 REMARK 500 2 LYS A 88 150.14 57.90 REMARK 500 2 GLU A 89 -67.42 75.51 REMARK 500 2 GLU A 119 76.52 -112.92 REMARK 500 3 TYR A 14 -22.11 -145.24 REMARK 500 3 LYS A 24 10.45 -67.95 REMARK 500 3 LYS A 38 106.05 53.17 REMARK 500 3 ASP A 56 20.62 41.79 REMARK 500 3 LYS A 88 -26.76 63.30 REMARK 500 3 GLU A 89 -63.86 -98.67 REMARK 500 3 HIS A 121 8.10 -67.77 REMARK 500 3 HIS A 122 109.15 56.26 REMARK 500 4 TYR A 14 17.53 -147.02 REMARK 500 4 ASP A 37 11.45 47.56 REMARK 500 4 LYS A 38 -121.88 -139.99 REMARK 500 4 TRP A 39 96.16 46.53 REMARK 500 4 ASP A 56 19.10 51.19 REMARK 500 4 ALA A 83 174.19 -45.99 REMARK 500 4 TYR A 84 -71.73 -72.62 REMARK 500 4 MET A 86 154.05 57.59 REMARK 500 4 ARG A 117 -95.57 -40.78 REMARK 500 4 HIS A 120 -59.99 -152.59 REMARK 500 4 HIS A 122 -25.81 -148.55 REMARK 500 5 PHE A 25 83.84 -153.29 REMARK 500 5 ASP A 37 -159.12 58.49 REMARK 500 5 ASN A 54 -83.15 52.77 REMARK 500 5 MET A 86 -175.25 -52.77 REMARK 500 5 HIS A 121 175.44 54.50 REMARK 500 6 ASP A 37 -86.19 46.68 REMARK 500 6 MET A 86 158.92 -38.06 REMARK 500 6 ASN A 87 79.96 72.96 REMARK 500 6 GLU A 89 -85.13 -57.81 REMARK 500 6 PRO A 99 9.01 -67.62 REMARK 500 6 ARG A 117 138.94 -37.84 REMARK 500 7 ASP A 37 -76.84 56.82 REMARK 500 REMARK 500 THIS ENTRY HAS 153 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 15 ARG A 58 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16186 RELATED DB: BMRB REMARK 900 RELATED ID: PSR293 RELATED DB: TARGETDB DBREF 2KFP A 1 117 UNP Q880Y4 Q880Y4_PSESM 1 117 SEQADV 2KFP LEU A 118 UNP Q880Y4 EXPRESSION TAG SEQADV 2KFP GLU A 119 UNP Q880Y4 EXPRESSION TAG SEQADV 2KFP HIS A 120 UNP Q880Y4 EXPRESSION TAG SEQADV 2KFP HIS A 121 UNP Q880Y4 EXPRESSION TAG SEQADV 2KFP HIS A 122 UNP Q880Y4 EXPRESSION TAG SEQADV 2KFP HIS A 123 UNP Q880Y4 EXPRESSION TAG SEQADV 2KFP HIS A 124 UNP Q880Y4 EXPRESSION TAG SEQADV 2KFP HIS A 125 UNP Q880Y4 EXPRESSION TAG SEQRES 1 A 125 MET ASN ARG GLN GLN PHE ILE ASP TYR ALA GLN LYS LYS SEQRES 2 A 125 TYR ASP THR LYS PRO ASP HIS PRO TRP GLU LYS PHE PRO SEQRES 3 A 125 ASP TYR ALA VAL PHE ARG HIS SER ASP ASN ASP LYS TRP SEQRES 4 A 125 TYR ALA LEU LEU MET ASP ILE PRO ALA GLU LYS ILE GLY SEQRES 5 A 125 ILE ASN GLY ASP LYS ARG VAL ASP VAL ILE ASP LEU LYS SEQRES 6 A 125 VAL GLN PRO GLU LEU VAL GLY SER LEU ARG LYS LYS PRO SEQRES 7 A 125 GLY ILE TYR PRO ALA TYR HIS MET ASN LYS GLU HIS TRP SEQRES 8 A 125 ILE THR VAL LEU LEU ASN GLY PRO LEU GLY ALA LYS GLU SEQRES 9 A 125 ILE HIS SER LEU ILE GLU ASP SER PHE GLN LEU THR ARG SEQRES 10 A 125 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 2 TYR A 14 1 13 HELIX 2 2 GLU A 49 ILE A 51 5 3 HELIX 3 3 LEU A 70 LYS A 77 1 8 HELIX 4 4 GLY A 101 THR A 116 1 16 SHEET 1 A 5 ALA A 29 VAL A 30 0 SHEET 2 A 5 LEU A 42 PRO A 47 -1 O LEU A 43 N ALA A 29 SHEET 3 A 5 ARG A 58 LYS A 65 -1 O VAL A 61 N MET A 44 SHEET 4 A 5 TRP A 91 LEU A 95 -1 O ILE A 92 N LEU A 64 SHEET 5 A 5 ILE A 80 PRO A 82 -1 N TYR A 81 O THR A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1