HEADER CELL CYCLE 04-MAR-09 2KG4 TITLE THREE-DIMENSIONAL STRUCTURE OF HUMAN GADD45ALPHA IN SOLUTION BY NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH ARREST AND DNA-DAMAGE-INDUCIBLE PROTEIN GADD45 COMPND 3 ALPHA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GADD45A, DNA-DAMAGE-INDUCIBLE TRANSCRIPT 1, DDIT-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GADD45A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (BL21)DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET28B KEYWDS GADD45, GROWTH ARREST, DNA DAMAGE, FLEXIBLE REGIONS, MONOMER, CELL KEYWDS 2 CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.SANCHEZ,D.PANTOJA-UCEDA,J.PRIETO,T.DIERCKS,R.CAMPOS-OLIVAS, AUTHOR 2 F.J.BLANCO REVDAT 5 15-MAY-24 2KG4 1 REMARK REVDAT 4 14-JUN-23 2KG4 1 REMARK REVDAT 3 26-FEB-20 2KG4 1 REMARK REVDAT 2 01-FEB-12 2KG4 1 JRNL VERSN REVDAT 1 31-MAR-09 2KG4 0 JRNL AUTH R.SANCHEZ,D.PANTOJA-UCEDA,J.PRIETO,T.DIERCKS,M.J.MARCAIDA, JRNL AUTH 2 G.MONTOYA,R.CAMPOS-OLIVAS,F.J.BLANCO JRNL TITL SOLUTION STRUCTURE OF HUMAN GROWTH ARREST AND DNA DAMAGE JRNL TITL 2 45ALPHA (GADD45ALPHA) AND ITS INTERACTIONS WITH JRNL TITL 3 PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) AND AURORA A JRNL TITL 4 KINASE JRNL REF J.BIOL.CHEM. V. 285 22196 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20460379 JRNL DOI 10.1074/JBC.M109.069344 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.02, AMBER 9 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), CASE, DARDEN, CHEATHAM, III, SIMMERLING, REMARK 3 WANG, DUKE, LUO, ... AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AMBER 9 EXPLICIT WATER USING GIBBS REMARK 3 -BOLTZMAN METHOD REMARK 4 REMARK 4 2KG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000101077. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.27 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.45MM [U-99% 13C; U-99% 15N] REMARK 210 GADD45A-1, 20MM SODIUM PHOSPHATE- REMARK 210 2, 100MM POTASSIUM CHLORIDE-3, REMARK 210 2MM DTT-4, 2MM EDTA-5, 0.03% REMARK 210 SODIUM AZIDE-6, 93% H2O/7% D2O; REMARK 210 0.45MM [U-99% 15N] GADD45A-7, REMARK 210 20MM SODIUM PHOSPHATE-8, 100MM REMARK 210 POTASSIUM CHLORIDE-9, 2MM DTT-10, REMARK 210 2MM EDTA-11, 0.03% SODIUM AZIDE- REMARK 210 12, 93% H2O/7% D2O; 0.195MM REMARK 210 GADD45A-13, 20MM SODIUM REMARK 210 PHOSPHATE-14, 100MM POTASSIUM REMARK 210 CHLORIDE-15, 2MM DTT-16, 2MM REMARK 210 EDTA-17, 0.03% SODIUM AZIDE-18, REMARK 210 100% D2O; 0.45MM [U-15N]-LEU REMARK 210 GADD45A-19, 20MM SODIUM REMARK 210 PHOSPHATE-20, 100MM POTASSIUM REMARK 210 CHLORIDE-21, 2MM DTT-22, 2MM REMARK 210 EDTA-23, 0.03% SODIUM AZIDE-24, REMARK 210 93% H2O/7% D2O; 0.45MM [U-15N]- REMARK 210 VAL GADD45A-25, 20MM SODIUM REMARK 210 PHOSPHATE-26, 100MM POTASSIUM REMARK 210 CHLORIDE-27, 2MM DTT-28, 2MM REMARK 210 EDTA-29, 0.03% SODIUM AZIDE-30, REMARK 210 93% H2O/7% D2O; 0.45MM [U-15N]- REMARK 210 ILE GADD45A-31, 20MM SODIUM REMARK 210 PHOSPHATE-32, 100MM POTASSIUM REMARK 210 CHLORIDE-33, 2MM DTT-34, 2MM REMARK 210 EDTA-35, 0.03% SODIUM AZIDE-36, REMARK 210 93% H2O/7% D2O; 0.45MM [U-15N]- REMARK 210 PHE/TYR GADD45A-37, 20MM SODIUM REMARK 210 PHOSPHATE-38, 100MM POTASSIUM REMARK 210 CHLORIDE-39, 2MM DTT-40, 2MM REMARK 210 EDTA-41, 0.03% SODIUM AZIDE-42, REMARK 210 93% H2O/7% D2O; 0.45MM [U-99% REMARK 210 15N] GADD45A-43, 20MM SODIUM REMARK 210 PHOSPHATE-44, 100MM POTASSIUM REMARK 210 CHLORIDE-45, 2MM DTT-46, 2MM REMARK 210 EDTA-47, 0.03% SODIUM AZIDE-48, REMARK 210 10 MG/ML PF1 PHAGE-49, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HMQC REMARK 210 -ALIPHATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HNHA; 3D 1H-15N NOESY; 2D REMARK 210 1H-1H NOESY; 2D 1H-13C HMQC- REMARK 210 AROMATIC; 4D 1H-15N 1H-13C NOESY; REMARK 210 2D 1H-15N HSQC-TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRDRAW 2.3, CYANA REMARK 210 2.1, TOPSPIN 2.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 7 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 12 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 15 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 6 17.62 -161.57 REMARK 500 1 ASP A 50 51.63 -147.20 REMARK 500 1 ASP A 86 81.57 49.28 REMARK 500 1 LEU A 104 -71.30 -64.03 REMARK 500 1 GLU A 105 -29.11 -151.82 REMARK 500 1 ASP A 107 29.16 41.54 REMARK 500 1 ALA A 116 -78.79 -62.32 REMARK 500 1 GLU A 117 85.13 -151.79 REMARK 500 1 SER A 133 98.26 -67.25 REMARK 500 1 TRP A 135 91.14 -67.71 REMARK 500 1 LYS A 136 -92.69 -118.84 REMARK 500 1 ASP A 137 146.26 60.40 REMARK 500 2 GLU A 4 -2.40 -154.42 REMARK 500 2 GLU A 14 22.89 -144.32 REMARK 500 2 TYR A 41 48.51 -88.73 REMARK 500 2 ASP A 50 42.83 -142.86 REMARK 500 2 ASN A 85 -29.48 -154.59 REMARK 500 2 ASN A 94 63.89 -118.47 REMARK 500 2 GLU A 105 81.24 53.13 REMARK 500 2 PRO A 110 31.13 -72.96 REMARK 500 2 GLU A 114 168.62 51.95 REMARK 500 2 ALA A 116 12.46 53.16 REMARK 500 2 PRO A 120 93.25 -68.78 REMARK 500 2 LEU A 122 49.37 39.45 REMARK 500 2 HIS A 131 67.23 -158.73 REMARK 500 2 MET A 153 -72.09 -79.43 REMARK 500 2 GLN A 155 93.87 63.23 REMARK 500 2 GLU A 164 -57.02 -149.29 REMARK 500 3 GLU A 5 -5.80 60.09 REMARK 500 3 PHE A 6 85.16 -49.93 REMARK 500 3 SER A 7 107.53 -160.96 REMARK 500 3 LEU A 104 -80.64 -86.80 REMARK 500 3 GLU A 105 -174.95 -172.83 REMARK 500 3 ALA A 112 30.60 -68.57 REMARK 500 3 GLU A 117 47.47 -97.76 REMARK 500 3 SER A 132 -66.85 -138.63 REMARK 500 3 SER A 133 -95.76 -140.11 REMARK 500 3 ASP A 154 72.27 73.03 REMARK 500 3 TRP A 156 -67.23 63.07 REMARK 500 4 PHE A 6 87.73 -156.70 REMARK 500 4 THR A 35 14.77 -142.46 REMARK 500 4 ASP A 50 46.14 -143.79 REMARK 500 4 VAL A 55 -41.47 -130.53 REMARK 500 4 LEU A 104 -62.39 -98.04 REMARK 500 4 PRO A 110 49.48 -75.78 REMARK 500 4 SER A 113 -51.32 -123.64 REMARK 500 4 GLU A 117 -77.68 -136.71 REMARK 500 4 SER A 133 -77.08 -110.77 REMARK 500 4 ASP A 154 0.95 84.04 REMARK 500 5 PHE A 6 83.88 -153.79 REMARK 500 REMARK 500 THIS ENTRY HAS 209 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15855 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS FOR GADD45A DBREF 2KG4 A 1 165 UNP P24522 GA45A_HUMAN 1 165 SEQRES 1 A 165 MET THR LEU GLU GLU PHE SER ALA GLY GLU GLN LYS THR SEQRES 2 A 165 GLU ARG MET ASP LYS VAL GLY ASP ALA LEU GLU GLU VAL SEQRES 3 A 165 LEU SER LYS ALA LEU SER GLN ARG THR ILE THR VAL GLY SEQRES 4 A 165 VAL TYR GLU ALA ALA LYS LEU LEU ASN VAL ASP PRO ASP SEQRES 5 A 165 ASN VAL VAL LEU CYS LEU LEU ALA ALA ASP GLU ASP ASP SEQRES 6 A 165 ASP ARG ASP VAL ALA LEU GLN ILE HIS PHE THR LEU ILE SEQRES 7 A 165 GLN ALA PHE CYS CYS GLU ASN ASP ILE ASN ILE LEU ARG SEQRES 8 A 165 VAL SER ASN PRO GLY ARG LEU ALA GLU LEU LEU LEU LEU SEQRES 9 A 165 GLU THR ASP ALA GLY PRO ALA ALA SER GLU GLY ALA GLU SEQRES 10 A 165 GLN PRO PRO ASP LEU HIS CYS VAL LEU VAL THR ASN PRO SEQRES 11 A 165 HIS SER SER GLN TRP LYS ASP PRO ALA LEU SER GLN LEU SEQRES 12 A 165 ILE CYS PHE CYS ARG GLU SER ARG TYR MET ASP GLN TRP SEQRES 13 A 165 VAL PRO VAL ILE ASN LEU PRO GLU ARG HELIX 1 1 ARG A 15 ARG A 34 1 20 HELIX 2 2 GLU A 42 ASP A 50 1 9 HELIX 3 3 GLU A 63 ARG A 67 5 5 HELIX 4 4 ASP A 68 ASN A 85 1 18 HELIX 5 5 ASN A 94 GLU A 105 1 12 HELIX 6 6 ASP A 137 TYR A 152 1 16 SHEET 1 A 5 ILE A 36 VAL A 38 0 SHEET 2 A 5 CYS A 124 THR A 128 -1 O LEU A 126 N THR A 37 SHEET 3 A 5 VAL A 54 ALA A 60 -1 N LEU A 58 O VAL A 125 SHEET 4 A 5 ILE A 89 VAL A 92 1 O VAL A 92 N LEU A 59 SHEET 5 A 5 VAL A 159 ILE A 160 1 O ILE A 160 N ARG A 91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1