HEADER SIGNALING PROTEIN 05-MAR-09 2KG5 TITLE NMR SOLUTION STRUCTURE OF ARAP3-SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARF-GAP, RHO-GAP DOMAIN, ANK REPEAT AND PH DOMAIN- COMPND 3 CONTAINING PROTEIN 3; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SAM DOMAIN, RESIDUES 1-80; COMPND 6 SYNONYM: CENTAURIN-DELTA-3, CNT-D3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARAP3, CENTD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS SAM DOMAIN, HELIX BUNDLE, CELL MEMBRANE, CELL PROJECTION, CYTOPLASM, KEYWDS 2 CYTOSKELETON, GTPASE ACTIVATION, MEMBRANE, METAL-BINDING, KEYWDS 3 PHOSPHOPROTEIN, POLYMORPHISM, ZINC, ZINC-FINGER, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.LEONE,M.PELLECCHIA REVDAT 3 22-MAY-24 2KG5 1 REMARK REVDAT 2 16-MAR-22 2KG5 1 REMARK SEQADV REVDAT 1 17-NOV-09 2KG5 0 JRNL AUTH M.LEONE,J.CELLITTI,M.PELLECCHIA JRNL TITL THE SAM DOMAIN OF THE LIPID PHOSPHATASE SHIP2 ADOPTS A JRNL TITL 2 COMMON MODEL TO INTERACT WITH ARAP3-SAM AND EPHA2-SAM. JRNL REF BMC STRUCT.BIOL. V. 9 59 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19765305 JRNL DOI 10.1186/1472-6807-9-59 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XEASY, CYANA 2.1 REMARK 3 AUTHORS : BARTELS ET AL. (XEASY), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE GENERATED BY ONLY REMARK 3 USING CYANA REMARK 4 REMARK 4 2KG5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000101078. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PROTEIN, 2.7 MM POTASSIUM REMARK 210 CHLORIDE, 137 MM SODIUM CHLORIDE, REMARK 210 11.9 MM PHOSPHATES, 0.3% MM REMARK 210 SODIUM AZIDE, 100% D2O; 1 MM [U- REMARK 210 100% 15N] PROTEIN, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 137 MM REMARK 210 SODIUM CHLORIDE, 11.9 MM REMARK 210 PHOSPHATES, 0.3% MM SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 137 MM REMARK 210 SODIUM CHLORIDE, 11.9 MM REMARK 210 PHOSPHATES, 0.3% MM SODIUM AZIDE, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, TOPSPIN 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 22 -174.35 55.30 REMARK 500 1 ASP A 26 45.67 -91.70 REMARK 500 1 GLU A 88 85.81 56.26 REMARK 500 1 LEU A 91 82.77 52.47 REMARK 500 1 LYS A 94 57.89 -150.20 REMARK 500 1 SER A 97 167.71 62.57 REMARK 500 1 ALA A 98 -50.22 -146.73 REMARK 500 1 MET A 99 -55.45 -162.82 REMARK 500 2 ASP A 26 47.00 -90.90 REMARK 500 2 ARG A 57 104.23 -50.23 REMARK 500 2 SER A 70 25.42 -159.63 REMARK 500 2 THR A 72 -68.97 72.58 REMARK 500 2 SER A 95 97.05 61.09 REMARK 500 3 PRO A 24 -171.27 -69.80 REMARK 500 3 ARG A 57 104.03 -50.44 REMARK 500 3 THR A 84 153.49 -49.28 REMARK 500 3 GLU A 88 -69.07 -177.41 REMARK 500 3 SER A 90 117.62 -175.03 REMARK 500 3 ASP A 92 72.55 55.91 REMARK 500 3 SER A 95 -68.92 -97.14 REMARK 500 3 ASP A 96 -166.57 46.59 REMARK 500 3 SER A 97 -61.73 -157.32 REMARK 500 4 ALA A 22 -177.23 58.19 REMARK 500 4 PRO A 24 -172.72 -69.80 REMARK 500 4 ASP A 26 49.51 -93.49 REMARK 500 4 ARG A 57 103.88 -50.45 REMARK 500 4 GLU A 88 141.62 -178.22 REMARK 500 4 LEU A 91 -74.89 -131.11 REMARK 500 4 ASP A 96 115.29 -176.22 REMARK 500 4 SER A 97 130.67 -176.66 REMARK 500 4 ALA A 98 115.83 -174.49 REMARK 500 5 ARG A 57 107.94 -50.37 REMARK 500 5 THR A 86 -46.01 -141.07 REMARK 500 5 GLU A 88 129.63 -177.36 REMARK 500 5 LEU A 91 138.73 -179.20 REMARK 500 5 ASP A 92 73.29 58.49 REMARK 500 5 SER A 95 -73.80 -100.90 REMARK 500 5 ALA A 98 103.96 -177.81 REMARK 500 5 MET A 99 -51.19 -154.43 REMARK 500 6 ALA A 22 176.50 58.94 REMARK 500 6 ASP A 26 48.74 -89.74 REMARK 500 6 ARG A 57 104.17 -50.34 REMARK 500 6 SER A 90 43.92 -172.40 REMARK 500 6 LEU A 91 125.82 -174.03 REMARK 500 6 LYS A 94 -177.24 58.23 REMARK 500 6 ASP A 96 57.18 -164.02 REMARK 500 6 ALA A 98 176.43 63.08 REMARK 500 7 ALA A 22 -176.94 57.01 REMARK 500 7 ASP A 26 46.34 -91.23 REMARK 500 7 ARG A 57 103.99 -50.25 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KG5 A 21 100 UNP Q8WWN8 ARAP3_HUMAN 1 80 SEQADV 2KG5 MET A 1 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 GLY A 2 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 3 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 4 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 5 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 6 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 7 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 8 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 9 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 10 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 11 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 12 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 GLY A 13 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 LEU A 14 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 VAL A 15 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 PRO A 16 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 ARG A 17 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 GLY A 18 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 19 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 20 UNP Q8WWN8 EXPRESSION TAG SEQRES 1 A 100 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 100 LEU VAL PRO ARG GLY SER HIS MET ALA ALA PRO GLN ASP SEQRES 3 A 100 LEU ASP ILE ALA VAL TRP LEU ALA THR VAL HIS LEU GLU SEQRES 4 A 100 GLN TYR ALA ASP THR PHE ARG ARG HIS GLY LEU ALA THR SEQRES 5 A 100 ALA GLY ALA ALA ARG GLY LEU GLY HIS GLU GLU LEU LYS SEQRES 6 A 100 GLN LEU GLY ILE SER ALA THR GLY HIS ARG LYS ARG ILE SEQRES 7 A 100 LEU ARG LEU LEU GLN THR GLY THR GLU GLU GLY SER LEU SEQRES 8 A 100 ASP PRO LYS SER ASP SER ALA MET GLU HELIX 1 1 ASP A 28 ALA A 34 1 7 HELIX 2 2 THR A 35 HIS A 37 5 3 HELIX 3 3 LEU A 38 GLN A 40 5 3 HELIX 4 4 TYR A 41 HIS A 48 1 8 HELIX 5 5 THR A 52 ARG A 57 1 6 HELIX 6 6 GLY A 60 GLY A 68 1 9 HELIX 7 7 ALA A 71 GLN A 83 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1