HEADER OXIDOREDUCTASE 28-APR-09 2KI8 TITLE SOLUTION NMR STRUCTURE OF TUNGSTEN FORMYLMETHANOFURAN DEHYDROGENASE TITLE 2 SUBUNIT D FROM ARCHAEOGLOBUS FULGIDUS, NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET ATT7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUNGSTEN FORMYLMETHANOFURAN DEHYDROGENASE, SUBUNIT D (FWDD- COMPND 3 2); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 STRAIN: VC-16; SOURCE 5 GENE: AF_1928; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 GOLD MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS BETA-BARREL, FWDD-2, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,Y.WU,A.YEE,C.FARES,H.W.LEE,C.H.ARROWSMITH,J.H.PRESTEGARD, AUTHOR 2 T.SZYPERSKI,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 3 22-MAY-24 2KI8 1 REMARK REVDAT 2 16-MAR-22 2KI8 1 REMARK REVDAT 1 26-MAY-09 2KI8 0 JRNL AUTH A.ELETSKY,Y.WU,A.YEE,C.FARES,H.W.LEE,C.H.ARROWSMITH, JRNL AUTH 2 J.H.PRESTEGARD,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF TUNGSTEN FORMYLMETHANOFURAN JRNL TITL 2 DEHYDROGENASE SUBUNIT D FROM ARCHAEOGLOBUS FULGIDUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 2.1B, CNS 1.2.1 REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY WITH CYANA V2.1 AND CYANA V3.0 USING NOE-BASED REMARK 3 CONSTRAINTS, PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS, REMARK 3 HYDROGEN BOND CONSTRAINTS BASED ON PRELIMINARY STRUCTURES AND REMARK 3 CLEANEX/MEXICO DATA, AND RDCS FROM A SINGLE ALIGNMENT MEDIUM. REMARK 3 THE 20 CONFORMERS OUT OF 100 WITH THE LOWEST TARGET FUNCTION REMARK 3 WERE FURTHER REFINED BY SIMULATED ANNEALING IN EXPLICIT WATER REMARK 3 BATH USING THE PROGRAM CNS WITH PARAM19 FORCE FIELD. REMARK 4 REMARK 4 2KI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101152. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 300; 200 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 ATT7 PROTEIN, 10 MM TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 1 MM REMARK 210 BENZAMIDINE, 90% H2O/10% D2O; REMARK 210 0.6 MM [U-7% 13C; U-100% 15N] REMARK 210 ATT7 PROTEIN, 10 MM TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 1 MM REMARK 210 BENZAMIDINE, 90% H2O/10% D2O; REMARK 210 0.4 MM [U-7% 13C; U-100% 15N] REMARK 210 ATT7 PROTEIN, 6.6 MM TRIS, 200 REMARK 210 MM SODIUM CHLORIDE, 0.7 MM REMARK 210 BENZAMIDINE, 13.25 G/L PF1 PHAGE, REMARK 210 86% H2O/14% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C CT-HSQC REMARK 210 ALIPHATIC; 2D 1H-13C CT-HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; (4,3)D GFT HCCH-COSY REMARK 210 ALIPHATIC; 3D HCCH-TOCSY REMARK 210 ALIPHATIC; (4,3)D GFT HCCH-COSY REMARK 210 AROMATIC; 3D 1H-15N,13C NOESY; REMARK 210 3D 1H-13C NOESY; 2D MEXICO; 2D REMARK 210 CLEANEX; 2D 1H-13C CT-HSQC REMARK 210 METHYL; 2D 1H-15N TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, PROSA 6.0.2, CARA REMARK 210 1.8.4, AUTOASSIGN 2.3.0, CSI 2.0, REMARK 210 TALOS 2007.068.09.07, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.1.1, PSVS 1.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 20 87.13 57.27 REMARK 500 1 LEU A 44 84.68 -67.32 REMARK 500 1 MET A 100 106.10 -54.52 REMARK 500 1 THR A 112 -177.30 -60.68 REMARK 500 1 PRO A 118 91.27 -67.78 REMARK 500 1 GLN A 119 -56.64 -130.99 REMARK 500 1 PHE A 120 -159.64 -160.34 REMARK 500 1 LYS A 121 98.10 70.84 REMARK 500 2 HIS A 10 -1.57 60.31 REMARK 500 2 SER A 12 96.54 -168.94 REMARK 500 2 HIS A 22 90.15 -66.43 REMARK 500 2 ASN A 35 55.00 -94.09 REMARK 500 2 ASP A 113 -64.06 -93.95 REMARK 500 2 THR A 115 -67.03 70.46 REMARK 500 2 MET A 117 158.02 75.71 REMARK 500 2 LYS A 121 131.82 65.52 REMARK 500 3 SER A 3 -70.27 -86.15 REMARK 500 3 HIS A 5 90.76 -65.69 REMARK 500 3 HIS A 10 -69.64 -90.26 REMARK 500 3 ARG A 14 112.80 -165.38 REMARK 500 3 ARG A 32 94.90 -62.30 REMARK 500 3 ASN A 35 89.21 72.64 REMARK 500 3 GLN A 36 -80.71 60.13 REMARK 500 3 GLU A 69 98.62 -44.52 REMARK 500 3 PHE A 79 -60.78 -91.98 REMARK 500 3 MET A 100 107.94 -51.39 REMARK 500 3 SER A 111 32.75 -83.04 REMARK 500 3 MET A 117 134.41 67.15 REMARK 500 3 GLN A 119 150.81 65.95 REMARK 500 4 TYR A 18 -163.06 56.39 REMARK 500 4 ALA A 38 -172.06 62.12 REMARK 500 4 LYS A 43 55.96 -101.95 REMARK 500 4 LEU A 44 27.05 -74.56 REMARK 500 4 MET A 100 104.73 -56.70 REMARK 500 5 ARG A 32 89.49 -68.64 REMARK 500 5 LEU A 34 -48.94 73.45 REMARK 500 5 ASN A 35 95.06 60.47 REMARK 500 5 GLN A 36 -51.59 -134.65 REMARK 500 5 LYS A 43 -65.10 -104.90 REMARK 500 5 LEU A 44 20.81 48.35 REMARK 500 5 GLU A 69 97.71 -56.17 REMARK 500 5 MET A 100 103.27 -59.08 REMARK 500 5 THR A 112 82.66 -68.31 REMARK 500 5 GLN A 119 41.64 -80.62 REMARK 500 6 HIS A 22 84.71 64.83 REMARK 500 6 ARG A 32 82.08 -65.99 REMARK 500 6 LEU A 34 -179.01 62.68 REMARK 500 6 GLN A 36 -154.14 -77.45 REMARK 500 6 LYS A 43 31.13 -98.48 REMARK 500 6 LEU A 44 82.80 -67.09 REMARK 500 REMARK 500 THIS ENTRY HAS 192 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATT7 RELATED DB: TARGETDB DBREF 2KI8 A 23 144 UNP O28351 O28351_ARCFU 1 122 SEQADV 2KI8 MET A 1 UNP O28351 EXPRESSION TAG SEQADV 2KI8 GLY A 2 UNP O28351 EXPRESSION TAG SEQADV 2KI8 SER A 3 UNP O28351 EXPRESSION TAG SEQADV 2KI8 SER A 4 UNP O28351 EXPRESSION TAG SEQADV 2KI8 HIS A 5 UNP O28351 EXPRESSION TAG SEQADV 2KI8 HIS A 6 UNP O28351 EXPRESSION TAG SEQADV 2KI8 HIS A 7 UNP O28351 EXPRESSION TAG SEQADV 2KI8 HIS A 8 UNP O28351 EXPRESSION TAG SEQADV 2KI8 HIS A 9 UNP O28351 EXPRESSION TAG SEQADV 2KI8 HIS A 10 UNP O28351 EXPRESSION TAG SEQADV 2KI8 SER A 11 UNP O28351 EXPRESSION TAG SEQADV 2KI8 SER A 12 UNP O28351 EXPRESSION TAG SEQADV 2KI8 GLY A 13 UNP O28351 EXPRESSION TAG SEQADV 2KI8 ARG A 14 UNP O28351 EXPRESSION TAG SEQADV 2KI8 GLU A 15 UNP O28351 EXPRESSION TAG SEQADV 2KI8 ASN A 16 UNP O28351 EXPRESSION TAG SEQADV 2KI8 LEU A 17 UNP O28351 EXPRESSION TAG SEQADV 2KI8 TYR A 18 UNP O28351 EXPRESSION TAG SEQADV 2KI8 PHE A 19 UNP O28351 EXPRESSION TAG SEQADV 2KI8 GLN A 20 UNP O28351 EXPRESSION TAG SEQADV 2KI8 GLY A 21 UNP O28351 EXPRESSION TAG SEQADV 2KI8 HIS A 22 UNP O28351 EXPRESSION TAG SEQADV 2KI8 GLY A 145 UNP O28351 EXPRESSION TAG SEQADV 2KI8 SER A 146 UNP O28351 EXPRESSION TAG SEQRES 1 A 146 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 146 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET LEU GLU VAL SEQRES 3 A 146 GLU VAL ILE SER GLY ARG THR LEU ASN GLN GLY ALA THR SEQRES 4 A 146 VAL GLU GLU LYS LEU THR GLU GLU TYR PHE ASN ALA VAL SEQRES 5 A 146 ASN TYR ALA GLU ILE ASN GLU GLU ASP TRP ASN ALA LEU SEQRES 6 A 146 GLY LEU GLN GLU GLY ASP ARG VAL LYS VAL LYS THR GLU SEQRES 7 A 146 PHE GLY GLU VAL VAL VAL PHE ALA LYS LYS GLY ASP VAL SEQRES 8 A 146 PRO LYS GLY MET ILE PHE ILE PRO MET GLY PRO TYR ALA SEQRES 9 A 146 ASN MET VAL ILE ASP PRO SER THR ASP GLY THR GLY MET SEQRES 10 A 146 PRO GLN PHE LYS GLY VAL LYS GLY THR VAL GLU LYS THR SEQRES 11 A 146 ASP GLU LYS VAL LEU SER VAL LYS GLU LEU LEU GLU ALA SEQRES 12 A 146 ILE GLY SER HELIX 1 1 THR A 45 VAL A 52 1 8 HELIX 2 2 ASN A 58 GLY A 66 1 9 HELIX 3 3 GLY A 101 MET A 106 1 6 HELIX 4 4 SER A 136 GLY A 145 1 10 SHEET 1 A 7 LEU A 24 GLY A 31 0 SHEET 2 A 7 MET A 95 PRO A 99 1 O ILE A 96 N ILE A 29 SHEET 3 A 7 TYR A 54 ILE A 57 -1 N GLU A 56 O PHE A 97 SHEET 4 A 7 GLU A 81 LYS A 88 1 O LYS A 87 N ILE A 57 SHEET 5 A 7 ARG A 72 LYS A 76 -1 N VAL A 75 O VAL A 82 SHEET 6 A 7 VAL A 123 LYS A 129 -1 O GLU A 128 N LYS A 74 SHEET 7 A 7 LEU A 24 GLY A 31 -1 N VAL A 28 O VAL A 123 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1