HEADER ENDOCYTOSIS, HYDROLASE 03-MAY-09 2KIG TITLE A PH DOMAIN WITHIN OCRL BRIDGES CLATHRIN MEDIATED MEMBRANE TRAFFICKING TITLE 2 TO PHOSPHOINOSITIDE METABOLISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL POLYPHOSPHATE 5-PHOSPHATASE II ISOFORM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-156; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: INPP5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX6P-1 KEYWDS OCRL, INPP5B, PH, CLATHRIN, ENDOCYTOSIS, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.MAO,M.E.HODSDON,P.DE CAMILLI REVDAT 3 16-MAR-22 2KIG 1 REMARK SEQADV REVDAT 2 08-SEP-09 2KIG 1 JRNL REVDAT 1 30-JUN-09 2KIG 0 JRNL AUTH Y.MAO,D.M.BALKIN,R.ZONCU,K.S.ERDMANN,L.TOMASINI,F.HU, JRNL AUTH 2 M.M.JIN,M.E.HODSDON,P.DE CAMILLI JRNL TITL A PH DOMAIN WITHIN OCRL BRIDGES CLATHRIN-MEDIATED MEMBRANE JRNL TITL 2 TRAFFICKING TO PHOSPHOINOSITIDE METABOLISM. JRNL REF EMBO J. V. 28 1831 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19536138 JRNL DOI 10.1038/EMBOJ.2009.155 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRDRAW, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRDRAW), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101160. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE-1, REMARK 210 POTASIUM PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D C(CO)NH; REMARK 210 3D HN(CO)CA; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 102 HE21 GLN A 116 1.33 REMARK 500 HE21 GLN A 105 O LEU A 113 1.43 REMARK 500 O ILE A 12 H LEU A 16 1.50 REMARK 500 O GLY A 120 H THR A 123 1.54 REMARK 500 OD1 ASP A 70 H ASP A 71 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 129.14 57.80 REMARK 500 1 MET A 6 -118.42 -74.61 REMARK 500 1 ASP A 7 11.67 -147.20 REMARK 500 1 LEU A 16 -119.97 -57.72 REMARK 500 1 GLU A 18 -177.13 -54.96 REMARK 500 1 ALA A 25 116.28 -164.37 REMARK 500 1 VAL A 26 -161.67 -108.26 REMARK 500 1 ASP A 51 -75.17 91.25 REMARK 500 1 ALA A 52 112.20 -23.38 REMARK 500 1 HIS A 62 148.15 -170.40 REMARK 500 1 ARG A 63 -160.63 -66.10 REMARK 500 1 THR A 68 -33.99 -28.73 REMARK 500 1 ASP A 83 -8.30 -59.07 REMARK 500 1 SER A 90 107.03 -37.59 REMARK 500 1 PRO A 91 -72.93 -46.90 REMARK 500 1 ASP A 92 31.55 39.39 REMARK 500 1 GLU A 94 -28.41 171.53 REMARK 500 1 LEU A 95 -17.43 173.19 REMARK 500 1 LEU A 98 -110.50 -82.94 REMARK 500 1 SER A 100 -5.16 89.09 REMARK 500 1 ASN A 107 64.11 -107.71 REMARK 500 1 GLU A 110 -34.45 -134.27 REMARK 500 1 PHE A 119 119.39 -34.90 REMARK 500 1 SER A 121 -110.41 48.48 REMARK 500 1 ALA A 133 -16.48 -44.66 REMARK 500 1 CYS A 134 -42.77 166.09 REMARK 500 1 PHE A 137 67.83 26.65 REMARK 500 1 ARG A 142 79.24 -176.24 REMARK 500 1 ASP A 143 70.34 -161.44 REMARK 500 1 PHE A 146 1.31 -155.67 REMARK 500 1 CYS A 154 156.92 56.52 REMARK 500 1 ALA A 155 163.62 -48.78 REMARK 500 1 PRO A 157 41.07 -77.50 REMARK 500 2 ASP A 7 176.59 179.71 REMARK 500 2 LEU A 16 -129.96 -102.79 REMARK 500 2 GLU A 18 108.07 -59.19 REMARK 500 2 ASP A 51 76.44 73.31 REMARK 500 2 ALA A 52 121.68 -173.18 REMARK 500 2 MET A 65 31.35 -150.18 REMARK 500 2 ILE A 67 -60.68 27.57 REMARK 500 2 THR A 68 -35.80 -28.42 REMARK 500 2 ASP A 75 -62.24 -106.10 REMARK 500 2 SER A 90 108.61 -43.12 REMARK 500 2 PRO A 91 -74.40 -46.11 REMARK 500 2 GLU A 94 20.55 42.01 REMARK 500 2 LEU A 95 59.58 -173.41 REMARK 500 2 TYR A 96 127.73 65.17 REMARK 500 2 ASN A 107 69.94 -106.95 REMARK 500 2 GLU A 110 -33.67 -134.56 REMARK 500 2 SER A 121 -113.71 54.65 REMARK 500 REMARK 500 THIS ENTRY HAS 525 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KIG A 6 161 UNP Q91ZF8 Q91ZF8_MOUSE 1 156 SEQADV 2KIG GLY A 1 UNP Q91ZF8 EXPRESSION TAG SEQADV 2KIG PRO A 2 UNP Q91ZF8 EXPRESSION TAG SEQADV 2KIG LEU A 3 UNP Q91ZF8 EXPRESSION TAG SEQADV 2KIG GLY A 4 UNP Q91ZF8 EXPRESSION TAG SEQADV 2KIG SER A 5 UNP Q91ZF8 EXPRESSION TAG SEQRES 1 A 161 GLY PRO LEU GLY SER MET ASP GLN SER VAL ALA ILE GLN SEQRES 2 A 161 GLU THR LEU VAL GLU GLY GLU TYR CYS VAL ILE ALA VAL SEQRES 3 A 161 GLN GLY VAL LEU CYS LYS GLY ASP SER ARG GLN SER ARG SEQRES 4 A 161 LEU LEU GLY LEU VAL ARG TYR ARG LEU GLU ASN ASP ALA SEQRES 5 A 161 GLN GLU HIS ALA LEU PHE LEU TYR THR HIS ARG ARG MET SEQRES 6 A 161 ALA ILE THR GLY ASP ASP VAL SER LEU ASP GLN ILE VAL SEQRES 7 A 161 PRO LEU SER LYS ASP PHE MET LEU GLU GLU VAL SER PRO SEQRES 8 A 161 ASP GLY GLU LEU TYR ILE LEU GLY SER ASP VAL THR VAL SEQRES 9 A 161 GLN LEU ASN THR ALA GLU LEU LYS LEU VAL PHE GLN LEU SEQRES 10 A 161 PRO PHE GLY SER HIS THR ARG THR PHE LEU GLN GLU VAL SEQRES 11 A 161 ALA ARG ALA CYS PRO GLY PHE ASP PRO GLU THR ARG ASP SEQRES 12 A 161 PRO GLU PHE GLU TRP LEU SER ARG HIS THR CYS ALA GLU SEQRES 13 A 161 PRO ASP ALA GLU SER HELIX 1 1 ASP A 7 LEU A 16 1 10 HELIX 2 2 MET A 65 GLY A 69 5 5 HELIX 3 3 HIS A 122 ALA A 133 1 12 HELIX 4 4 TRP A 148 HIS A 152 5 5 SHEET 1 A 3 CYS A 22 ILE A 24 0 SHEET 2 A 3 SER A 35 LEU A 48 -1 O LEU A 43 N ILE A 24 SHEET 3 A 3 GLN A 27 LYS A 32 -1 N LYS A 32 O SER A 35 SHEET 1 B 4 CYS A 22 ILE A 24 0 SHEET 2 B 4 SER A 35 LEU A 48 -1 O LEU A 43 N ILE A 24 SHEET 3 B 4 ASP A 51 THR A 61 -1 O GLU A 54 N TYR A 46 SHEET 4 B 4 LEU A 74 VAL A 78 -1 O ASP A 75 N LEU A 59 SHEET 1 C 3 LEU A 86 GLU A 87 0 SHEET 2 C 3 VAL A 102 ASN A 107 -1 O GLN A 105 N GLU A 87 SHEET 3 C 3 LYS A 112 LEU A 117 -1 O PHE A 115 N VAL A 104 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1