HEADER METAL BINDING PROTEIN 28-MAY-09 2KJG TITLE SOLUTION STRUCTURE OF AN ARCHAEAL PROTEIN SSO6904 FROM TITLE 2 HYPERTHERMOPHILIC SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEAL PROTEIN SSO6904; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: SSO6904; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS HYPOTHETICAL PROTEIN, HELICAL PROTEIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.FENG,H.YAO,J.WANG REVDAT 4 14-JUN-23 2KJG 1 REMARK REVDAT 3 26-FEB-20 2KJG 1 REMARK SEQADV REVDAT 2 22-DEC-09 2KJG 1 JRNL REVDAT 1 13-OCT-09 2KJG 0 JRNL AUTH Y.FENG,H.YAO,J.WANG JRNL TITL SOLUTION STRUCTURE AND CALCIUM BINDING OF PROTEIN SSO6904 JRNL TITL 2 FROM THE HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS SOLFATARICUS. JRNL REF PROTEINS V. 78 474 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19768683 JRNL DOI 10.1002/PROT.22580 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101195. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-1.5 MM [U-13C; U-15N] SS6904, REMARK 210 50 MM POTASSIUM PHOSPHATE, 100 REMARK 210 MM POTASSIUM CHLORIDE, 10% V/V REMARK 210 [U-99.8% 2H] D2O, 0.02% W/V DSS, REMARK 210 0.02% W/V SODIUM AZIDE, 50 MM REMARK 210 ARGININE, 50 MM GLUTAMIC ACID, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HN(CA)CO; 3D REMARK 210 HBHA(CO)NH; 3D HBHANH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY-HSQC; 3D REMARK 210 1H-13C NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, CYANA, CNS REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 3 14.81 -156.26 REMARK 500 1 ASN A 59 52.66 -112.53 REMARK 500 1 GLU A 93 -80.50 -46.73 REMARK 500 1 HIS A 96 -63.59 -123.21 REMARK 500 2 LYS A 16 -67.61 72.97 REMARK 500 2 ARG A 36 97.83 -63.46 REMARK 500 2 SER A 38 -159.43 -147.11 REMARK 500 2 GLU A 93 -145.01 -149.18 REMARK 500 3 LYS A 16 -0.03 71.67 REMARK 500 3 ARG A 36 -74.47 63.54 REMARK 500 4 LYS A 16 -82.83 74.34 REMARK 500 4 ARG A 36 97.99 -66.12 REMARK 500 4 SER A 38 107.99 169.24 REMARK 500 4 ASP A 39 -79.53 -168.55 REMARK 500 4 ASN A 40 143.80 -177.97 REMARK 500 4 LYS A 91 -147.90 -104.75 REMARK 500 4 HIS A 95 -170.21 69.17 REMARK 500 4 HIS A 97 62.58 34.09 REMARK 500 5 LYS A 16 -171.52 72.44 REMARK 500 5 ARG A 36 -85.65 55.04 REMARK 500 5 SER A 38 -87.25 -87.03 REMARK 500 5 ASP A 39 -72.93 -101.42 REMARK 500 5 HIS A 52 48.53 -98.46 REMARK 500 5 LEU A 92 34.55 -89.57 REMARK 500 5 HIS A 94 -62.41 57.56 REMARK 500 5 HIS A 98 -65.34 68.34 REMARK 500 6 ILE A 3 -32.45 69.20 REMARK 500 6 LYS A 16 177.24 71.29 REMARK 500 6 LYS A 18 38.30 -94.82 REMARK 500 6 SER A 38 90.38 76.10 REMARK 500 6 ASP A 39 -83.73 -141.20 REMARK 500 6 HIS A 94 -68.07 -161.38 REMARK 500 7 SER A 2 89.48 64.76 REMARK 500 7 ILE A 3 -30.05 -154.58 REMARK 500 7 ARG A 36 -83.27 59.22 REMARK 500 7 HIS A 52 43.31 -107.22 REMARK 500 7 HIS A 95 -75.10 -123.51 REMARK 500 7 HIS A 98 -12.76 72.05 REMARK 500 8 SER A 2 -69.55 -141.46 REMARK 500 8 ILE A 3 -10.99 -171.12 REMARK 500 8 LYS A 16 -84.86 72.03 REMARK 500 8 HIS A 52 45.55 -104.99 REMARK 500 9 ILE A 3 -34.48 -163.67 REMARK 500 9 SER A 38 -103.26 -119.44 REMARK 500 9 ASP A 39 -52.60 178.23 REMARK 500 9 LEU A 92 85.35 64.36 REMARK 500 9 HIS A 96 -86.86 -151.06 REMARK 500 9 HIS A 97 24.33 -157.21 REMARK 500 9 HIS A 98 -43.71 -140.24 REMARK 500 10 ILE A 3 -32.86 76.10 REMARK 500 REMARK 500 THIS ENTRY HAS 114 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 72 0.08 SIDE CHAIN REMARK 500 2 ARG A 13 0.08 SIDE CHAIN REMARK 500 4 ARG A 72 0.08 SIDE CHAIN REMARK 500 9 ARG A 13 0.08 SIDE CHAIN REMARK 500 13 ARG A 13 0.08 SIDE CHAIN REMARK 500 17 ARG A 72 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16320 RELATED DB: BMRB DBREF 2KJG A 1 91 UNP Q97ZE1 Q97ZE1_SULSO 4 94 SEQADV 2KJG LEU A 92 UNP Q97ZE1 EXPRESSION TAG SEQADV 2KJG GLU A 93 UNP Q97ZE1 EXPRESSION TAG SEQADV 2KJG HIS A 94 UNP Q97ZE1 EXPRESSION TAG SEQADV 2KJG HIS A 95 UNP Q97ZE1 EXPRESSION TAG SEQADV 2KJG HIS A 96 UNP Q97ZE1 EXPRESSION TAG SEQADV 2KJG HIS A 97 UNP Q97ZE1 EXPRESSION TAG SEQADV 2KJG HIS A 98 UNP Q97ZE1 EXPRESSION TAG SEQADV 2KJG HIS A 99 UNP Q97ZE1 EXPRESSION TAG SEQRES 1 A 99 MET SER ILE LEU GLU ASP PRO GLU PHE VAL LYS LEU ARG SEQRES 2 A 99 GLN PHE LYS GLY LYS VAL ASN PHE ASN LEU VAL MET GLN SEQRES 3 A 99 ILE LEU ASP GLU ILE GLU LEU ASP LEU ARG GLY SER ASP SEQRES 4 A 99 ASN ILE LYS THR SER ILE ILE TYR VAL TYR SER SER HIS SEQRES 5 A 99 LEU ASP GLU ILE ARG LYS ASN LYS GLU PHE TYR ASP MET SEQRES 6 A 99 ILE ALA GLU ILE LEU GLN ARG TYR TYR LYS LYS ILE GLY SEQRES 7 A 99 ILE GLU ASN VAL ASN GLN LEU ILE LEU THR THR ILE LYS SEQRES 8 A 99 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 6 LYS A 16 1 11 HELIX 2 2 ASN A 20 SER A 38 1 19 HELIX 3 3 ASN A 40 HIS A 52 1 13 HELIX 4 4 HIS A 52 ASN A 59 1 8 HELIX 5 5 ASN A 59 LYS A 75 1 17 HELIX 6 6 GLY A 78 LYS A 91 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1