HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-MAY-09 2KJK TITLE SOLUTION STRUCTURE OF THE SECOND DOMAIN OF THE LISTERIA PROTEIN TITLE 2 LIN2157, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LKR136B COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN2157 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA; SOURCE 3 ORGANISM_TAXID: 1642; SOURCE 4 GENE: LIN2157; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET121 KEYWDS PDZ DOMAIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.WANG,K.HAMILTON,R.H.XIAO,D.LEE,C.H.CICCOSANTI,R.NAIR,B.ROST, AUTHOR 2 T.B.ACTON,G.SWAPNA,J.K.EVERETT,G.T.MONTELIONE,J.H.PRESTEGARD, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KJK 1 REMARK REVDAT 2 26-FEB-20 2KJK 1 REMARK SEQADV REVDAT 1 07-JUL-09 2KJK 0 JRNL AUTH X.WANG,G.T.MONTELIONE,J.PRESTEGARD JRNL TITL SOLUTION STRUCTURE OF LKR136B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE FIRST CALCULATED USING REMARK 3 CYANA'S AUTOMATIC NOE ASSIGNMENT MODULE, WHICH IS SIMULATED REMARK 3 ANNEALING BASED. THEY WERE THEN REFINED IN XPLOR-NIH USING REMARK 3 SIMULATED ANNEALING REFINEMENT PROTOCOL REMARK 4 REMARK 4 2KJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101199. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18 MM [U-100% 13C; U-100% 15N] REMARK 210 LKR136B, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 200 MM SODIUM REMARK 210 CHLORIDE, 20 MM SODIUM ACETATE, REMARK 210 5 MM CALCIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 1.18 MM [U-100% 13C; U- REMARK 210 100% 15N] LKR136B, 4 % REMARK 210 PENTAETHYLENE GLYCOL MONODODECYL REMARK 210 ETHER, 200 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 10 MM DTT, REMARK 210 20 MM SODIUM ACETATE, 5 MM REMARK 210 CALCIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 2D HSQC/TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 6 55.01 -168.36 REMARK 500 1 ASP A 7 81.35 -150.25 REMARK 500 1 GLU A 16 64.29 -64.94 REMARK 500 1 ASP A 17 45.68 -175.97 REMARK 500 1 ASP A 34 20.14 41.57 REMARK 500 1 PHE A 38 -26.14 -148.27 REMARK 500 1 LYS A 39 -108.37 -167.28 REMARK 500 1 SER A 40 -141.80 -110.69 REMARK 500 1 ASP A 55 -165.25 -67.85 REMARK 500 1 ASP A 91 58.14 -163.21 REMARK 500 1 ASP A 92 107.64 57.99 REMARK 500 1 LEU A 93 -83.24 -47.18 REMARK 500 1 GLU A 94 -165.53 49.90 REMARK 500 1 HIS A 96 75.28 40.53 REMARK 500 1 HIS A 97 90.71 -166.70 REMARK 500 1 HIS A 99 -55.12 -168.75 REMARK 500 2 LYS A 3 -35.91 -138.72 REMARK 500 2 TYR A 6 70.29 50.30 REMARK 500 2 ASP A 7 -130.16 -123.52 REMARK 500 2 LYS A 15 -108.75 -39.49 REMARK 500 2 GLU A 16 20.01 -159.61 REMARK 500 2 ASP A 17 -68.06 -169.02 REMARK 500 2 VAL A 18 148.20 4.46 REMARK 500 2 PRO A 19 9.18 -56.70 REMARK 500 2 SER A 50 37.14 -78.06 REMARK 500 2 ASP A 55 -168.91 -62.08 REMARK 500 2 ASP A 91 68.23 -163.38 REMARK 500 2 ASP A 92 -79.62 -44.45 REMARK 500 2 GLU A 94 116.31 57.04 REMARK 500 2 HIS A 98 -34.30 -148.25 REMARK 500 3 LYS A 3 -77.64 -153.39 REMARK 500 3 THR A 5 -107.29 -68.16 REMARK 500 3 ASP A 7 -78.33 -70.12 REMARK 500 3 ASP A 34 16.91 48.97 REMARK 500 3 SER A 37 106.37 58.09 REMARK 500 3 PHE A 38 -1.05 -174.18 REMARK 500 3 SER A 50 46.48 -92.33 REMARK 500 3 ASP A 91 38.73 -155.94 REMARK 500 3 HIS A 96 -86.58 54.08 REMARK 500 3 HIS A 97 72.87 -65.96 REMARK 500 3 HIS A 98 -122.90 51.48 REMARK 500 4 ASP A 17 35.23 -145.75 REMARK 500 4 ASP A 34 14.47 45.80 REMARK 500 4 SER A 37 -99.99 63.44 REMARK 500 4 PHE A 38 13.32 44.59 REMARK 500 4 ASP A 91 -86.87 -25.68 REMARK 500 4 ASP A 92 41.03 -169.67 REMARK 500 4 LEU A 93 71.50 55.56 REMARK 500 4 HIS A 97 29.23 -168.60 REMARK 500 5 THR A 5 -81.04 -67.29 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LKR136B RELATED DB: TARGETDB REMARK 900 RELATED ID: 16325 RELATED DB: BMRB DBREF 2KJK A 2 92 UNP Q929W6 Q929W6_LISIN 124 214 SEQADV 2KJK MET A 1 UNP Q929W6 INITIATING METHIONINE SEQADV 2KJK LEU A 93 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK GLU A 94 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 95 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 96 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 97 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 98 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 99 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 100 UNP Q929W6 EXPRESSION TAG SEQRES 1 A 100 MET VAL LYS VAL THR TYR ASP GLY VAL TYR VAL LEU SER SEQRES 2 A 100 VAL LYS GLU ASP VAL PRO ALA ALA GLY ILE LEU HIS ALA SEQRES 3 A 100 GLY ASP LEU ILE THR GLU ILE ASP GLY GLN SER PHE LYS SEQRES 4 A 100 SER SER GLN GLU PHE ILE ASP TYR ILE HIS SER LYS LYS SEQRES 5 A 100 VAL GLY ASP THR VAL LYS ILE LYS TYR LYS HIS GLY ASN SEQRES 6 A 100 LYS ASN GLU GLU ALA SER ILE LYS LEU THR ALA ILE ASP SEQRES 7 A 100 LYS LYS GLY THR PRO GLY ILE GLY ILE THR LEU VAL ASP SEQRES 8 A 100 ASP LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 40 LYS A 51 1 12 SHEET 1 A 5 LYS A 66 LYS A 73 0 SHEET 2 A 5 THR A 56 HIS A 63 -1 N ILE A 59 O ALA A 70 SHEET 3 A 5 LEU A 29 ILE A 33 -1 N GLU A 32 O LYS A 60 SHEET 4 A 5 VAL A 9 VAL A 14 -1 N VAL A 9 O ILE A 30 SHEET 5 A 5 ILE A 87 LEU A 89 -1 O THR A 88 N LEU A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1