data_2KKC # _entry.id 2KKC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KKC pdb_00002kkc 10.2210/pdb2kkc/pdb RCSB RCSB101227 ? ? WWPDB D_1000101227 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 16361 _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KKC _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-06-18 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yokochi, M.' 1 'Inagaki, F.' 2 # _citation.id primary _citation.title 'The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-kappaB signaling pathway' _citation.journal_abbrev J.Biomol.Nmr _citation.journal_volume 45 _citation.page_first 335 _citation.page_last 341 _citation.year 2009 _citation.journal_id_ASTM JBNME9 _citation.country NE _citation.journal_id_ISSN 0925-2738 _citation.journal_id_CSD 0800 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19728111 _citation.pdbx_database_id_DOI 10.1007/s10858-009-9370-7 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Saio, T.' 1 ? primary 'Yokochi, M.' 2 ? primary 'Inagaki, F.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Sequestosome-1 _entity.formula_weight 11428.100 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'D67A, D69R' _entity.pdbx_fragment 'PB1 domain, OPR domain, residues 3-100' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'p62, Ubiquitin-binding protein p62, Protein kinase C-zeta-interacting protein, PKC-zeta-interacting protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSD EELTMAMSYVKDDIFRIYIKEK ; _entity_poly.pdbx_seq_one_letter_code_can ;GPHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSD EELTMAMSYVKDDIFRIYIKEK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 LEU n 1 7 THR n 1 8 VAL n 1 9 LYS n 1 10 ALA n 1 11 TYR n 1 12 LEU n 1 13 LEU n 1 14 GLY n 1 15 LYS n 1 16 GLU n 1 17 GLU n 1 18 ALA n 1 19 ALA n 1 20 ARG n 1 21 GLU n 1 22 ILE n 1 23 ARG n 1 24 ARG n 1 25 PHE n 1 26 SER n 1 27 PHE n 1 28 CYS n 1 29 PHE n 1 30 SER n 1 31 PRO n 1 32 GLU n 1 33 PRO n 1 34 GLU n 1 35 ALA n 1 36 GLU n 1 37 ALA n 1 38 ALA n 1 39 ALA n 1 40 GLY n 1 41 PRO n 1 42 GLY n 1 43 PRO n 1 44 CYS n 1 45 GLU n 1 46 ARG n 1 47 LEU n 1 48 LEU n 1 49 SER n 1 50 ARG n 1 51 VAL n 1 52 ALA n 1 53 VAL n 1 54 LEU n 1 55 PHE n 1 56 PRO n 1 57 ALA n 1 58 LEU n 1 59 ARG n 1 60 PRO n 1 61 GLY n 1 62 GLY n 1 63 PHE n 1 64 GLN n 1 65 ALA n 1 66 HIS n 1 67 TYR n 1 68 ARG n 1 69 ALA n 1 70 GLU n 1 71 ARG n 1 72 GLY n 1 73 ASP n 1 74 LEU n 1 75 VAL n 1 76 ALA n 1 77 PHE n 1 78 SER n 1 79 SER n 1 80 ASP n 1 81 GLU n 1 82 GLU n 1 83 LEU n 1 84 THR n 1 85 MET n 1 86 ALA n 1 87 MET n 1 88 SER n 1 89 TYR n 1 90 VAL n 1 91 LYS n 1 92 ASP n 1 93 ASP n 1 94 ILE n 1 95 PHE n 1 96 ARG n 1 97 ILE n 1 98 TYR n 1 99 ILE n 1 100 LYS n 1 101 GLU n 1 102 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name rat _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pGSPS _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SQSTM_RAT _struct_ref.pdbx_db_accession O08623 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRDEDGDLVAFSSDEELT MAMSYVKDDIFRIYIKEK ; _struct_ref.pdbx_align_begin 3 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KKC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 102 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O08623 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 100 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 100 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KKC GLY A 1 ? UNP O08623 ? ? 'expression tag' -1 1 1 2KKC PRO A 2 ? UNP O08623 ? ? 'expression tag' 0 2 1 2KKC HIS A 3 ? UNP O08623 ? ? 'expression tag' 1 3 1 2KKC MET A 4 ? UNP O08623 ? ? 'expression tag' 2 4 1 2KKC ALA A 69 ? UNP O08623 ASP 67 'engineered mutation' 67 5 1 2KKC ARG A 71 ? UNP O08623 ASP 69 'engineered mutation' 69 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCO' 1 5 1 '3D HNCA' 1 6 1 '3D HNCACB' 1 7 1 '3D HBHA(CO)NH' 1 8 1 '3D HN(CO)CA' 1 9 1 '3D HCCH-TOCSY' 1 10 1 '3D HCCH-TOCSY' 1 11 1 '3D HNCAHA' 1 12 1 '3D 1H-15N NOESY' 1 13 1 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1mM [U-99% 13C; U-99% 15N] p62 PB1-1, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model 'Unity Inova' _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian Unity Inova' # _pdbx_nmr_refine.entry_id 2KKC _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KKC _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KKC _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Masashi Yokochi' 'chemical shift assignment' Olivia 1.15.2 1 'Masashi Yokochi' 'data analysis' Olivia 1.15.2 2 'Masashi Yokochi' 'peak picking' Olivia 1.15.2 3 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 2.1 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KKC _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KKC _struct.title 'NMR structure of the p62 PB1 domain' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KKC _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN, TRANSPORT PROTEIN' _struct_keywords.text ;p62, PB1, autophagy, ubiquitin-proteasome system, NF-kB signaling, Alternative splicing, Apoptosis, Cytoplasm, Differentiation, Endosome, Immune response, Metal-binding, Nucleus, Phosphoprotein, Zinc, Zinc-finger, SIGNALING PROTEIN, TRANSPORT PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 42 ? PHE A 55 ? GLY A 40 PHE A 53 1 ? 14 HELX_P HELX_P2 2 SER A 79 ? VAL A 90 ? SER A 77 VAL A 88 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 19 ? CYS A 28 ? ALA A 17 CYS A 26 A 2 SER A 5 ? LEU A 13 ? SER A 3 LEU A 11 A 3 ILE A 94 ? GLU A 101 ? ILE A 92 GLU A 99 A 4 PHE A 63 ? ARG A 68 ? PHE A 61 ARG A 66 A 5 LEU A 74 ? PHE A 77 ? LEU A 72 PHE A 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 27 ? O PHE A 25 N LEU A 6 ? N LEU A 4 A 2 3 N TYR A 11 ? N TYR A 9 O ILE A 99 ? O ILE A 97 A 3 4 O TYR A 98 ? O TYR A 96 N HIS A 66 ? N HIS A 64 A 4 5 N ALA A 65 ? N ALA A 63 O PHE A 77 ? O PHE A 75 # _atom_sites.entry_id 2KKC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 PRO 2 0 ? ? ? A . n A 1 3 HIS 3 1 1 HIS HIS A . n A 1 4 MET 4 2 2 MET MET A . n A 1 5 SER 5 3 3 SER SER A . n A 1 6 LEU 6 4 4 LEU LEU A . n A 1 7 THR 7 5 5 THR THR A . n A 1 8 VAL 8 6 6 VAL VAL A . n A 1 9 LYS 9 7 7 LYS LYS A . n A 1 10 ALA 10 8 8 ALA ALA A . n A 1 11 TYR 11 9 9 TYR TYR A . n A 1 12 LEU 12 10 10 LEU LEU A . n A 1 13 LEU 13 11 11 LEU LEU A . n A 1 14 GLY 14 12 12 GLY GLY A . n A 1 15 LYS 15 13 13 LYS LYS A . n A 1 16 GLU 16 14 14 GLU GLU A . n A 1 17 GLU 17 15 15 GLU GLU A . n A 1 18 ALA 18 16 16 ALA ALA A . n A 1 19 ALA 19 17 17 ALA ALA A . n A 1 20 ARG 20 18 18 ARG ARG A . n A 1 21 GLU 21 19 19 GLU GLU A . n A 1 22 ILE 22 20 20 ILE ILE A . n A 1 23 ARG 23 21 21 ARG ARG A . n A 1 24 ARG 24 22 22 ARG ARG A . n A 1 25 PHE 25 23 23 PHE PHE A . n A 1 26 SER 26 24 24 SER SER A . n A 1 27 PHE 27 25 25 PHE PHE A . n A 1 28 CYS 28 26 26 CYS CYS A . n A 1 29 PHE 29 27 27 PHE PHE A . n A 1 30 SER 30 28 28 SER SER A . n A 1 31 PRO 31 29 29 PRO PRO A . n A 1 32 GLU 32 30 30 GLU GLU A . n A 1 33 PRO 33 31 31 PRO PRO A . n A 1 34 GLU 34 32 32 GLU GLU A . n A 1 35 ALA 35 33 33 ALA ALA A . n A 1 36 GLU 36 34 34 GLU GLU A . n A 1 37 ALA 37 35 35 ALA ALA A . n A 1 38 ALA 38 36 36 ALA ALA A . n A 1 39 ALA 39 37 37 ALA ALA A . n A 1 40 GLY 40 38 38 GLY GLY A . n A 1 41 PRO 41 39 39 PRO PRO A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 PRO 43 41 41 PRO PRO A . n A 1 44 CYS 44 42 42 CYS CYS A . n A 1 45 GLU 45 43 43 GLU GLU A . n A 1 46 ARG 46 44 44 ARG ARG A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 LEU 48 46 46 LEU LEU A . n A 1 49 SER 49 47 47 SER SER A . n A 1 50 ARG 50 48 48 ARG ARG A . n A 1 51 VAL 51 49 49 VAL VAL A . n A 1 52 ALA 52 50 50 ALA ALA A . n A 1 53 VAL 53 51 51 VAL VAL A . n A 1 54 LEU 54 52 52 LEU LEU A . n A 1 55 PHE 55 53 53 PHE PHE A . n A 1 56 PRO 56 54 54 PRO PRO A . n A 1 57 ALA 57 55 55 ALA ALA A . n A 1 58 LEU 58 56 56 LEU LEU A . n A 1 59 ARG 59 57 57 ARG ARG A . n A 1 60 PRO 60 58 58 PRO PRO A . n A 1 61 GLY 61 59 59 GLY GLY A . n A 1 62 GLY 62 60 60 GLY GLY A . n A 1 63 PHE 63 61 61 PHE PHE A . n A 1 64 GLN 64 62 62 GLN GLN A . n A 1 65 ALA 65 63 63 ALA ALA A . n A 1 66 HIS 66 64 64 HIS HIS A . n A 1 67 TYR 67 65 65 TYR TYR A . n A 1 68 ARG 68 66 66 ARG ARG A . n A 1 69 ALA 69 67 67 ALA ALA A . n A 1 70 GLU 70 68 68 GLU GLU A . n A 1 71 ARG 71 69 69 ARG ARG A . n A 1 72 GLY 72 70 70 GLY GLY A . n A 1 73 ASP 73 71 71 ASP ASP A . n A 1 74 LEU 74 72 72 LEU LEU A . n A 1 75 VAL 75 73 73 VAL VAL A . n A 1 76 ALA 76 74 74 ALA ALA A . n A 1 77 PHE 77 75 75 PHE PHE A . n A 1 78 SER 78 76 76 SER SER A . n A 1 79 SER 79 77 77 SER SER A . n A 1 80 ASP 80 78 78 ASP ASP A . n A 1 81 GLU 81 79 79 GLU GLU A . n A 1 82 GLU 82 80 80 GLU GLU A . n A 1 83 LEU 83 81 81 LEU LEU A . n A 1 84 THR 84 82 82 THR THR A . n A 1 85 MET 85 83 83 MET MET A . n A 1 86 ALA 86 84 84 ALA ALA A . n A 1 87 MET 87 85 85 MET MET A . n A 1 88 SER 88 86 86 SER SER A . n A 1 89 TYR 89 87 87 TYR TYR A . n A 1 90 VAL 90 88 88 VAL VAL A . n A 1 91 LYS 91 89 89 LYS LYS A . n A 1 92 ASP 92 90 90 ASP ASP A . n A 1 93 ASP 93 91 91 ASP ASP A . n A 1 94 ILE 94 92 92 ILE ILE A . n A 1 95 PHE 95 93 93 PHE PHE A . n A 1 96 ARG 96 94 94 ARG ARG A . n A 1 97 ILE 97 95 95 ILE ILE A . n A 1 98 TYR 98 96 96 TYR TYR A . n A 1 99 ILE 99 97 97 ILE ILE A . n A 1 100 LYS 100 98 98 LYS LYS A . n A 1 101 GLU 101 99 99 GLU GLU A . n A 1 102 LYS 102 100 100 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_nmr_exptl_sample.component 'p62 PB1-1' _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-99% 13C; U-99% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 17 ? ? -54.70 107.84 2 1 PRO A 39 ? ? -69.83 -171.82 3 1 PHE A 53 ? ? -116.62 70.46 4 1 ALA A 74 ? ? -57.74 105.59 5 1 SER A 76 ? ? -161.42 30.68 6 2 ALA A 17 ? ? -55.66 104.21 7 2 ALA A 35 ? ? -53.30 -75.70 8 2 PRO A 39 ? ? -69.82 -177.22 9 2 ALA A 74 ? ? -57.16 104.98 10 2 SER A 76 ? ? -162.33 34.34 11 3 ALA A 17 ? ? -51.67 106.35 12 3 ALA A 33 ? ? -134.54 -40.75 13 3 PRO A 39 ? ? -69.75 -170.82 14 3 PHE A 53 ? ? -115.14 72.17 15 3 ALA A 74 ? ? -55.93 105.27 16 3 SER A 76 ? ? -160.61 36.38 17 4 ALA A 35 ? ? -51.76 -70.21 18 4 ALA A 37 ? ? -100.85 57.94 19 4 PRO A 39 ? ? -69.78 -170.10 20 4 PHE A 53 ? ? -118.97 70.24 21 4 SER A 76 ? ? -165.72 32.29 22 4 ASP A 90 ? ? -102.40 -169.75 23 5 ALA A 16 ? ? -111.04 -73.08 24 5 ALA A 17 ? ? -167.78 117.72 25 5 PRO A 39 ? ? -69.79 -171.31 26 5 PHE A 53 ? ? -116.21 70.80 27 5 ALA A 74 ? ? -56.82 105.55 28 5 SER A 76 ? ? -152.67 33.57 29 6 ALA A 17 ? ? -55.27 104.44 30 6 ALA A 37 ? ? -103.21 45.81 31 6 PRO A 39 ? ? -69.77 -170.96 32 6 PHE A 53 ? ? -116.18 70.31 33 6 SER A 76 ? ? -158.33 45.49 34 7 ARG A 21 ? ? -176.00 145.15 35 7 GLU A 34 ? ? -130.32 -47.03 36 7 ALA A 35 ? ? -178.86 147.59 37 7 ALA A 37 ? ? -95.52 35.80 38 7 PRO A 39 ? ? -69.80 -170.60 39 7 ALA A 74 ? ? -59.82 105.72 40 7 SER A 76 ? ? -157.96 31.26 41 8 ALA A 16 ? ? -104.74 -67.17 42 8 ALA A 17 ? ? -178.28 101.31 43 8 GLU A 32 ? ? -115.00 -169.81 44 8 ALA A 33 ? ? -139.89 -48.91 45 8 ALA A 37 ? ? -105.90 57.66 46 8 PRO A 39 ? ? -69.74 -176.75 47 8 PHE A 53 ? ? -117.91 69.87 48 8 ALA A 74 ? ? -56.70 105.63 49 8 SER A 76 ? ? -165.14 33.74 50 9 ALA A 17 ? ? -51.98 103.21 51 9 PRO A 39 ? ? -69.77 -169.39 52 9 ALA A 74 ? ? -57.22 105.16 53 9 SER A 76 ? ? -163.66 31.50 54 10 ALA A 17 ? ? -178.57 110.68 55 10 ARG A 21 ? ? -174.99 148.86 56 10 ALA A 33 ? ? -92.99 -70.06 57 10 ALA A 35 ? ? -51.41 -75.86 58 10 ALA A 37 ? ? -164.23 91.24 59 10 PHE A 53 ? ? -116.92 71.25 60 10 ALA A 74 ? ? -57.65 105.95 61 10 SER A 76 ? ? -162.63 26.40 62 11 ALA A 16 ? ? -103.89 42.39 63 11 ALA A 17 ? ? 62.48 67.58 64 11 PRO A 39 ? ? -69.77 -170.98 65 11 PHE A 53 ? ? -117.76 68.16 66 11 SER A 76 ? ? -154.82 38.93 67 11 ASP A 90 ? ? -102.19 -169.04 68 12 PRO A 39 ? ? -69.73 -170.79 69 12 PHE A 53 ? ? -117.14 69.03 70 12 SER A 76 ? ? -168.50 35.35 71 13 ALA A 16 ? ? -110.60 -73.89 72 13 ALA A 17 ? ? -164.89 108.36 73 13 ARG A 21 ? ? -176.44 147.47 74 13 ALA A 35 ? ? -177.56 113.45 75 13 ALA A 36 ? ? -60.99 -170.03 76 13 ALA A 37 ? ? -109.75 44.15 77 13 PRO A 39 ? ? -69.74 -177.37 78 13 ALA A 74 ? ? -54.91 104.94 79 13 SER A 76 ? ? -178.34 49.62 80 13 ASP A 91 ? ? -99.97 32.22 81 14 ALA A 17 ? ? -58.77 108.77 82 14 GLU A 34 ? ? -122.76 -59.75 83 14 ALA A 35 ? ? -178.19 126.28 84 14 ALA A 37 ? ? -63.04 -165.57 85 14 PRO A 39 ? ? -69.71 -173.78 86 14 ALA A 74 ? ? -54.43 105.31 87 14 SER A 76 ? ? -149.44 39.27 88 15 ALA A 17 ? ? -177.41 103.30 89 15 GLU A 34 ? ? -98.26 -61.24 90 15 ALA A 37 ? ? -94.46 45.53 91 15 PRO A 39 ? ? -69.73 -175.61 92 15 PHE A 53 ? ? -119.35 73.22 93 15 LEU A 56 ? ? -118.36 -168.74 94 15 SER A 76 ? ? -166.62 37.86 95 16 ALA A 36 ? ? -59.96 -169.70 96 16 PHE A 53 ? ? -116.82 69.92 97 16 ASP A 71 ? ? -56.35 172.86 98 16 ALA A 74 ? ? -55.54 105.59 99 16 SER A 76 ? ? -163.94 36.95 100 17 ALA A 17 ? ? -57.06 107.37 101 17 ARG A 21 ? ? -176.01 123.55 102 17 ALA A 37 ? ? -94.92 45.74 103 17 PRO A 39 ? ? -69.74 -171.14 104 17 PHE A 53 ? ? -119.75 71.56 105 17 ALA A 74 ? ? -59.46 106.00 106 17 SER A 76 ? ? -164.87 27.64 107 17 ASP A 90 ? ? -100.64 -169.13 108 18 ALA A 17 ? ? -52.11 104.77 109 18 ALA A 35 ? ? -103.89 -77.04 110 18 ALA A 36 ? ? 50.25 86.99 111 18 ALA A 37 ? ? -103.61 41.83 112 18 PRO A 39 ? ? -69.76 -170.65 113 18 PHE A 53 ? ? -117.45 68.71 114 18 ALA A 74 ? ? -54.83 105.71 115 18 SER A 76 ? ? -164.42 36.52 116 19 ALA A 16 ? ? -115.45 53.56 117 19 GLU A 34 ? ? -132.23 -48.74 118 19 ALA A 35 ? ? -178.77 116.11 119 19 ALA A 37 ? ? -67.06 -165.78 120 19 ALA A 74 ? ? -59.57 99.47 121 19 SER A 76 ? ? -156.44 45.37 122 20 ALA A 36 ? ? -51.68 -76.69 123 20 PHE A 53 ? ? -118.68 72.13 124 20 ASP A 71 ? ? -57.91 173.24 125 20 ALA A 74 ? ? -57.28 105.14 126 20 SER A 76 ? ? -164.99 40.13 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A PRO 0 ? A PRO 2 3 2 Y 1 A GLY -1 ? A GLY 1 4 2 Y 1 A PRO 0 ? A PRO 2 5 3 Y 1 A GLY -1 ? A GLY 1 6 3 Y 1 A PRO 0 ? A PRO 2 7 4 Y 1 A GLY -1 ? A GLY 1 8 4 Y 1 A PRO 0 ? A PRO 2 9 5 Y 1 A GLY -1 ? A GLY 1 10 5 Y 1 A PRO 0 ? A PRO 2 11 6 Y 1 A GLY -1 ? A GLY 1 12 6 Y 1 A PRO 0 ? A PRO 2 13 7 Y 1 A GLY -1 ? A GLY 1 14 7 Y 1 A PRO 0 ? A PRO 2 15 8 Y 1 A GLY -1 ? A GLY 1 16 8 Y 1 A PRO 0 ? A PRO 2 17 9 Y 1 A GLY -1 ? A GLY 1 18 9 Y 1 A PRO 0 ? A PRO 2 19 10 Y 1 A GLY -1 ? A GLY 1 20 10 Y 1 A PRO 0 ? A PRO 2 21 11 Y 1 A GLY -1 ? A GLY 1 22 11 Y 1 A PRO 0 ? A PRO 2 23 12 Y 1 A GLY -1 ? A GLY 1 24 12 Y 1 A PRO 0 ? A PRO 2 25 13 Y 1 A GLY -1 ? A GLY 1 26 13 Y 1 A PRO 0 ? A PRO 2 27 14 Y 1 A GLY -1 ? A GLY 1 28 14 Y 1 A PRO 0 ? A PRO 2 29 15 Y 1 A GLY -1 ? A GLY 1 30 15 Y 1 A PRO 0 ? A PRO 2 31 16 Y 1 A GLY -1 ? A GLY 1 32 16 Y 1 A PRO 0 ? A PRO 2 33 17 Y 1 A GLY -1 ? A GLY 1 34 17 Y 1 A PRO 0 ? A PRO 2 35 18 Y 1 A GLY -1 ? A GLY 1 36 18 Y 1 A PRO 0 ? A PRO 2 37 19 Y 1 A GLY -1 ? A GLY 1 38 19 Y 1 A PRO 0 ? A PRO 2 39 20 Y 1 A GLY -1 ? A GLY 1 40 20 Y 1 A PRO 0 ? A PRO 2 #