HEADER MEMBRANE PROTEIN 19-JUN-09 2KKG TITLE NMR STRUCTURE OF THE OCTAREPEAT REGION OF PRION PROTEIN BOUND TO TITLE 2 PENTOSAN POLYSULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRP, PRP27-30, PRP33-35C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESOCRICETUS AURATUS; SOURCE 3 ORGANISM_COMMON: GOLDEN HAMSTERS; SOURCE 4 ORGANISM_TAXID: 10036; SOURCE 5 GENE: PRNP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-41 KEYWDS PRION PROTEIN, OCTAPEPTIDE REPEATS, PENTOSAN POLYSULFATE, SULFATED KEYWDS 2 GLYCANS, CELL MEMBRANE, DISULFIDE BOND, GLYCOPROTEIN, GOLGI KEYWDS 3 APPARATUS, GPI-ANCHOR, LIPOPROTEIN, MEMBRANE, PRION, MEMBRANE KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.M.TAUBNER,B.CAUGHEY,V.COPIE REVDAT 3 16-MAR-22 2KKG 1 REMARK SEQADV REVDAT 2 09-FEB-10 2KKG 1 JRNL REVDAT 1 10-NOV-09 2KKG 0 JRNL AUTH L.M.TAUBNER,E.A.BIENKIEWICZ,V.COPIE,B.CAUGHEY JRNL TITL STRUCTURE OF THE FLEXIBLE AMINO-TERMINAL DOMAIN OF PRION JRNL TITL 2 PROTEIN BOUND TO A SULFATED GLYCAN. JRNL REF J.MOL.BIOL. V. 395 475 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19913031 JRNL DOI 10.1016/J.JMB.2009.10.075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROCHECKNMR, CNS REMARK 3 AUTHORS : LASKOWSKI AND MACARTHUR (PROCHECKNMR), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101231. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-15N] OCTAREPEATS-1, 5 REMARK 210 % [U-2H] D2O-2, 20 % [U-2H] DMSO- REMARK 210 3, 20 MM PENTOSAN POLYSULFATE-4, REMARK 210 10 MM SODIUM ACETATE-5, 75 % H2O- REMARK 210 6, 95% H2O/5% D2O; 0.5 MM [U-13C; REMARK 210 U-15N] OCTAREPEATS-7, 5 % [U-2H] REMARK 210 D2O-8, 20 % [U-2H] DMSO-9, 20 REMARK 210 MM PENTOSAN POLYSULFATE-10, 10 REMARK 210 MM SODIUM ACETATE-11, 75 % H2O- REMARK 210 12, 95% H2O/5% D2O; 0.5 MM [U- REMARK 210 13C; U-15N] OCTAREPEATS-13, 80 % REMARK 210 [U-2H] D2O-14, 20 % [U-2H] DMSO- REMARK 210 15, 20 MM PENTOSAN POLYSULFATE- REMARK 210 16, 10 MM SODIUM ACETATE-17, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCA; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CNS, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 TRP A 31 REMARK 465 ASN A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 ARG A 37 REMARK 465 TYR A 38 REMARK 465 PRO A 39 REMARK 465 GLY A 40 REMARK 465 GLN A 41 REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 GLY A 45 REMARK 465 GLY A 46 REMARK 465 ASN A 47 REMARK 465 ARG A 48 REMARK 465 TYR A 49 REMARK 465 PRO A 50 REMARK 465 PRO A 51 REMARK 465 GLN A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 GLY A 55 REMARK 465 THR A 56 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 THR A 95 REMARK 465 HIS A 96 REMARK 465 ASN A 97 REMARK 465 GLN A 98 REMARK 465 TRP A 99 REMARK 465 ASN A 100 REMARK 465 LYS A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 PRO A 105 REMARK 465 LYS A 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 65 -78.60 -147.06 REMARK 500 1 TRP A 73 -78.90 -146.76 REMARK 500 1 TRP A 81 -77.11 -147.56 REMARK 500 1 TRP A 89 -77.78 -147.52 REMARK 500 2 GLN A 59 155.08 54.74 REMARK 500 2 TRP A 65 -76.82 -147.91 REMARK 500 2 TRP A 73 -78.02 -147.69 REMARK 500 2 TRP A 81 -78.88 -146.81 REMARK 500 2 TRP A 89 -77.92 -146.85 REMARK 500 3 GLN A 59 155.55 54.62 REMARK 500 3 TRP A 65 -77.61 -147.13 REMARK 500 3 TRP A 73 -78.60 -146.31 REMARK 500 3 TRP A 81 -78.54 -146.28 REMARK 500 3 TRP A 89 -77.98 -147.14 REMARK 500 4 TRP A 65 -77.68 -147.33 REMARK 500 4 TRP A 73 -77.25 -147.82 REMARK 500 4 TRP A 81 -75.59 -148.24 REMARK 500 4 TRP A 89 23.57 -161.11 REMARK 500 5 TRP A 65 -75.88 -148.46 REMARK 500 5 TRP A 73 -78.33 -136.21 REMARK 500 5 TRP A 81 -78.27 -137.09 REMARK 500 5 TRP A 89 -76.18 -148.31 REMARK 500 6 TRP A 65 -75.97 -148.69 REMARK 500 6 TRP A 73 -79.36 -148.04 REMARK 500 6 TRP A 81 -78.60 -147.42 REMARK 500 6 TRP A 89 -77.51 -147.92 REMARK 500 7 GLN A 59 165.03 57.53 REMARK 500 7 TRP A 65 -78.62 -146.88 REMARK 500 7 TRP A 73 -79.08 -141.31 REMARK 500 7 TRP A 81 -77.96 -147.53 REMARK 500 7 TRP A 89 -78.01 -147.80 REMARK 500 8 GLN A 59 154.32 54.92 REMARK 500 8 TRP A 65 -77.94 -147.39 REMARK 500 8 TRP A 73 -77.79 -144.78 REMARK 500 8 TRP A 81 -77.98 -145.65 REMARK 500 8 TRP A 89 -79.36 -146.10 REMARK 500 9 TRP A 65 -79.04 -146.33 REMARK 500 9 TRP A 73 -79.72 -146.25 REMARK 500 9 TRP A 81 -78.36 -147.70 REMARK 500 9 TRP A 89 -78.50 -142.58 REMARK 500 10 TRP A 65 -78.61 -137.41 REMARK 500 10 TRP A 73 -77.97 -146.20 REMARK 500 10 TRP A 81 -78.60 -145.18 REMARK 500 10 TRP A 89 -78.74 -147.30 REMARK 500 11 TRP A 65 -78.09 -147.52 REMARK 500 11 TRP A 73 -78.53 -146.75 REMARK 500 11 TRP A 81 -78.06 -146.75 REMARK 500 11 TRP A 89 -77.99 -147.18 REMARK 500 12 GLN A 59 156.42 56.19 REMARK 500 12 TRP A 65 -77.60 -147.13 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KKG A 23 106 UNP P04273 PRIO_MESAU 23 106 SEQADV 2KKG MET A 22 UNP P04273 INITIATING METHIONINE SEQRES 1 A 85 MET LYS LYS ARG PRO LYS PRO GLY GLY TRP ASN THR GLY SEQRES 2 A 85 GLY SER ARG TYR PRO GLY GLN GLY SER PRO GLY GLY ASN SEQRES 3 A 85 ARG TYR PRO PRO GLN GLY GLY GLY THR TRP GLY GLN PRO SEQRES 4 A 85 HIS GLY GLY GLY TRP GLY GLN PRO HIS GLY GLY GLY TRP SEQRES 5 A 85 GLY GLN PRO HIS GLY GLY GLY TRP GLY GLN PRO HIS GLY SEQRES 6 A 85 GLY GLY TRP GLY GLN GLY GLY GLY THR HIS ASN GLN TRP SEQRES 7 A 85 ASN LYS PRO SER LYS PRO LYS CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1