HEADER TRANSLATION 26-JUN-09 2KKM TITLE SOLUTION NMR STRUCTURE OF YEAST PROTEIN YOR252W [RESIDUES 38-178]: TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET YT654 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION MACHINERY-ASSOCIATED PROTEIN 16; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 38-178; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TMA16, YOR242W, YOR252W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS TRANSLATION MACHINERY ASSOCIATED PROTEIN 16, NUCLEUS, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,A.YEE,C.LIU,C.H.ARROWSMITH,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 08-MAY-24 2KKM 1 REMARK REVDAT 3 14-JUN-23 2KKM 1 REMARK REVDAT 2 26-FEB-20 2KKM 1 REMARK SEQADV REVDAT 1 06-OCT-09 2KKM 0 JRNL AUTH J.R.CORT,A.YEE,C.LIU,C.H.ARROWSMITH,G.T.MONTELIONE, JRNL AUTH 2 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF YEAST PROTEIN YOR252W JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE, AUTOSTRUCTURE, X-PLOR NIH, PSVS, REMARK 3 CNS REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), HUANG, TEJERO, POWERS AND REMARK 3 MONTELIONE (AUTOSTRUCTURE), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), BHATTACHARYA AND REMARK 3 MONTELIONE (PSVS), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101237. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-99% 13C; U-99% 15N] REMARK 210 YOR252W, 300 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 1 MM BENZAMIDINE, REMARK 210 0.01 % SODIUM AZIDE, 93% H2O/7% REMARK 210 D2O; 0.6 MM [U-99% 13C; U-99% REMARK 210 15N] YOR252W, 300 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 1 MM REMARK 210 BENZAMIDINE, 0.01 % SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HNHA; 3D HN(CO)CA; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 4D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : COMBINATION OF LOWEST ENERGY, REMARK 210 FEWEST RESTRAINT VIOLATIONS, AND REMARK 210 FAVORABLE GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 11 OD1 ASP A 15 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 115 36.37 -93.24 REMARK 500 1 ASP A 131 -93.76 56.98 REMARK 500 2 ARG A 73 88.59 -157.43 REMARK 500 2 PRO A 75 101.47 -47.62 REMARK 500 2 LEU A 102 -26.78 71.45 REMARK 500 2 ASP A 131 -78.34 62.82 REMARK 500 3 LYS A 9 37.89 -86.47 REMARK 500 3 SER A 76 -72.80 -73.14 REMARK 500 3 ASP A 131 -97.13 52.94 REMARK 500 4 PHE A 36 24.80 -143.68 REMARK 500 4 PHE A 42 -165.32 -103.52 REMARK 500 4 ARG A 73 104.69 70.79 REMARK 500 4 PRO A 75 84.88 -70.00 REMARK 500 4 ASP A 131 -93.94 56.76 REMARK 500 4 LYS A 132 44.27 -100.79 REMARK 500 4 ASN A 140 -69.14 -166.73 REMARK 500 5 ALA A 8 -66.17 -121.74 REMARK 500 5 LYS A 11 -40.00 -143.38 REMARK 500 5 GLU A 20 -66.59 -102.19 REMARK 500 5 PHE A 42 -160.38 -110.22 REMARK 500 5 LEU A 102 -32.40 75.70 REMARK 500 5 ASN A 115 -157.12 -145.00 REMARK 500 5 ASP A 131 -87.77 58.31 REMARK 500 6 ALA A 8 -167.02 -101.37 REMARK 500 6 GLN A 14 95.60 65.70 REMARK 500 6 PHE A 36 14.40 -143.05 REMARK 500 6 SER A 76 -87.88 55.34 REMARK 500 6 ASP A 131 -95.37 60.32 REMARK 500 6 LYS A 132 86.47 -156.36 REMARK 500 6 ASN A 140 78.02 68.76 REMARK 500 7 ARG A 2 -167.57 -111.66 REMARK 500 7 PHE A 36 22.64 -142.12 REMARK 500 7 SER A 76 -75.48 -87.63 REMARK 500 7 ASP A 131 -71.18 66.16 REMARK 500 7 LYS A 132 -80.97 -122.93 REMARK 500 8 ILE A 6 116.95 -166.57 REMARK 500 8 GLU A 20 -66.51 -108.63 REMARK 500 8 ASP A 34 1.58 -69.53 REMARK 500 8 PHE A 36 22.87 -141.22 REMARK 500 8 PRO A 40 -71.94 -61.57 REMARK 500 8 SER A 76 -95.01 52.47 REMARK 500 8 ASP A 101 99.70 -62.24 REMARK 500 8 LYS A 132 37.05 -97.45 REMARK 500 8 VAL A 137 -61.26 -100.07 REMARK 500 9 LYS A 10 -57.95 -159.49 REMARK 500 9 HIS A 13 -39.20 -178.88 REMARK 500 9 GLU A 20 -60.18 -94.03 REMARK 500 9 ASP A 34 1.69 -63.40 REMARK 500 9 PHE A 36 29.22 -141.16 REMARK 500 9 ARG A 69 -62.10 51.48 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YT654 RELATED DB: TARGETDB REMARK 900 RELATED ID: 16365 RELATED DB: BMRB DBREF 2KKM A 1 141 UNP Q08687 TMA16_YEAST 38 178 SEQADV 2KKM GLY A -2 UNP Q08687 EXPRESSION TAG SEQADV 2KKM SER A -1 UNP Q08687 EXPRESSION TAG SEQADV 2KKM HIS A 0 UNP Q08687 EXPRESSION TAG SEQRES 1 A 144 GLY SER HIS MET ARG GLU ASP LYS ILE ALA ALA LYS LYS SEQRES 2 A 144 LYS LEU HIS GLN ASP LYS ARG VAL HIS GLU LEU ALA ARG SEQRES 3 A 144 VAL LYS PHE MET GLN ASP VAL VAL ASN SER ASP THR PHE SEQRES 4 A 144 LYS GLY GLN PRO ILE PHE ASP HIS ALA HIS THR ARG GLU SEQRES 5 A 144 PHE ILE GLN SER PHE ILE GLU ARG ASP ASP THR GLU LEU SEQRES 6 A 144 ASP GLU LEU LYS LYS LYS ARG ARG SER ASN ARG PRO PRO SEQRES 7 A 144 SER ASN ARG GLN VAL LEU LEU GLN GLN ARG ARG ASP GLN SEQRES 8 A 144 GLU LEU LYS GLU PHE LYS ALA GLY PHE LEU CYS PRO ASP SEQRES 9 A 144 LEU SER ASP ALA LYS ASN MET GLU PHE LEU ARG ASN TRP SEQRES 10 A 144 ASN GLY THR PHE GLY LEU LEU ASN THR LEU ARG LEU ILE SEQRES 11 A 144 ARG ILE ASN ASP LYS GLY GLU GLN VAL VAL GLY GLY ASN SEQRES 12 A 144 GLU HELIX 1 1 ARG A 17 SER A 33 1 17 HELIX 2 2 ASP A 43 ARG A 69 1 27 HELIX 3 3 ARG A 70 ASN A 72 5 3 HELIX 4 4 ASN A 77 ALA A 95 1 19 HELIX 5 5 ASP A 104 ASN A 113 1 10 HELIX 6 6 GLY A 119 LEU A 124 1 6 SHEET 1 A 3 PHE A 97 PRO A 100 0 SHEET 2 A 3 LEU A 126 ASN A 130 -1 O ILE A 129 N PHE A 97 SHEET 3 A 3 GLU A 134 GLN A 135 -1 O GLU A 134 N ASN A 130 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1