HEADER DNA BINDING PROTEIN 26-JUN-09 2KKO TITLE SOLUTION NMR STRUCTURE OF THE HOMODIMERIC WINGED HELIX-TURN-HELIX DNA- TITLE 2 BINDING DOMAIN (FRAGMENT 1-100) MB0332 FROM MYCOBACTERIUM BOVIS, A TITLE 3 POSSIBLE ARSR-FAMILY TRANSCRIPTIONAL REGULATOR. NORTHEAST STRUCTURAL TITLE 4 GENOMICS CONSORTIUM TARGET MBR242E. COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY ARSR- COMPND 3 FAMILY); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: HTH ARSR-TYPE DNA BINDING DOMAIN RESIDUES 1-100; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM BOVIS; SOURCE 3 ORGANISM_TAXID: 1765; SOURCE 4 GENE: MB0332; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS NESG, DNA-BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTIONAL KEYWDS 2 REGULATOR, WHTH, HOMODIMER, WINGED HELIX-TURN-HELIX, TRANSCRIPTION, KEYWDS 3 TRANSFERASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, DNA BINDING KEYWDS 5 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,D.WANG,C.CICCOSANTI,M.JIANG,R.NAIR,B.ROST, AUTHOR 2 G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2KKO 1 REMARK REVDAT 3 26-FEB-20 2KKO 1 REMARK SEQADV REVDAT 2 26-JAN-10 2KKO 1 AUTHOR REVDAT 1 11-AUG-09 2KKO 0 JRNL AUTH T.A.RAMELOT,J.R.CORT,D.WANG,C.CICCOSANTI,M.JIANG,R.NAIR, JRNL AUTH 2 B.ROST,G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF THE HOMODIMERIC WINGED JRNL TITL 2 HELIX-TURN-HELIX DNA-BINDING DOMAIN (FRAGMENT 1-100) MB0332 JRNL TITL 3 FROM MYCOBACTERIUM BOVIS, A POSSIBLE ARSR-FAMILY JRNL TITL 4 TRANSCRIPTIONAL REGULATOR. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 5 CONSORTIUM TARGET MBR242E. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, CNS 1.2 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS WATER REFINEMENT REMARK 4 REMARK 4 2KKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101239. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM MES, 200 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 1.1 MM [U-100% 13C; REMARK 210 U-100% 15N] PROTEIN, 50 UM DSS, REMARK 210 95% H2O/5% D2O; 20 MM MES, 200 REMARK 210 MM SODIUM CHLORIDE, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 0.8 MM [U-5% REMARK 210 13C; U-100% 15N] PROTEIN, 50 UM REMARK 210 DSS, 95% H2O/5% D2O; 20 MM MES, REMARK 210 200 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 0.5 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 50 UM DSS, .5 MM PROTEIN, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D C(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-13C NOESY AROM; REMARK 210 3D CN FILT 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.3, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, PSVS 1.3, REMARK 210 AUTOASSIGN 2.3.0, PDBSTAT 5.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 4 139.71 -172.69 REMARK 500 1 ASN A 24 -41.11 -170.48 REMARK 500 1 GLU A 102 62.38 -103.31 REMARK 500 1 GLU B 102 96.18 57.09 REMARK 500 1 HIS B 104 -170.74 65.45 REMARK 500 2 GLN A 4 -35.68 74.65 REMARK 500 2 HIS A 106 -49.19 -132.91 REMARK 500 2 ASP B 6 128.89 72.31 REMARK 500 2 HIS B 103 -65.50 70.05 REMARK 500 3 GLN A 4 101.11 60.32 REMARK 500 3 GLU A 102 33.03 -95.86 REMARK 500 3 HIS A 105 -174.62 70.08 REMARK 500 3 SER B 5 91.69 64.80 REMARK 500 3 ASN B 24 112.29 81.55 REMARK 500 3 LYS B 63 -70.36 -80.12 REMARK 500 3 LEU B 67 43.09 76.46 REMARK 500 4 ASN A 24 -154.21 60.93 REMARK 500 4 ALA A 82 -77.20 -67.47 REMARK 500 4 GLU A 102 -87.29 87.07 REMARK 500 4 HIS A 107 -153.47 64.63 REMARK 500 4 ALA B 2 174.23 66.76 REMARK 500 4 ASP B 98 -70.73 -92.51 REMARK 500 4 GLU B 102 -153.70 -174.20 REMARK 500 5 ALA A 2 -58.22 70.56 REMARK 500 5 HIS A 105 -0.04 -144.56 REMARK 500 5 SER B 5 -60.97 71.71 REMARK 500 5 ASP B 6 -14.64 74.70 REMARK 500 5 ASN B 24 99.15 -179.33 REMARK 500 5 ALA B 82 -71.71 -53.86 REMARK 500 5 HIS B 104 66.13 73.36 REMARK 500 5 HIS B 107 102.70 -165.35 REMARK 500 6 ALA A 2 -62.28 -162.35 REMARK 500 6 GLN A 4 -81.67 -130.59 REMARK 500 6 SER A 5 -33.56 71.57 REMARK 500 6 ASN A 24 104.79 65.99 REMARK 500 6 ALA A 97 -73.30 -82.19 REMARK 500 6 GLU A 102 163.24 67.35 REMARK 500 6 ASN B 24 112.73 -173.08 REMARK 500 6 GLU B 102 108.49 -53.23 REMARK 500 6 HIS B 105 -87.02 69.77 REMARK 500 6 HIS B 106 -58.79 -143.91 REMARK 500 7 ALA A 2 86.41 53.76 REMARK 500 7 ASN A 24 -170.83 70.88 REMARK 500 7 HIS A 106 101.51 -171.86 REMARK 500 7 HIS A 107 48.87 -98.71 REMARK 500 7 SER B 5 -16.61 75.96 REMARK 500 7 GLU B 102 -91.94 44.84 REMARK 500 7 HIS B 105 -83.97 -163.74 REMARK 500 8 ALA A 2 -47.09 69.92 REMARK 500 8 GLU A 102 107.06 -52.60 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16368 RELATED DB: BMRB REMARK 900 RELATED ID: MBR242F RELATED DB: TARGETDB DBREF 2KKO A 1 100 UNP Q7U294 Q7U294_MYCBO 1 100 DBREF 2KKO B 1 100 UNP Q7U294 Q7U294_MYCBO 1 100 SEQADV 2KKO LEU A 101 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO GLU A 102 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS A 103 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS A 104 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS A 105 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS A 106 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS A 107 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS A 108 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO LEU B 101 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO GLU B 102 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS B 103 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS B 104 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS B 105 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS B 106 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS B 107 UNP Q7U294 EXPRESSION TAG SEQADV 2KKO HIS B 108 UNP Q7U294 EXPRESSION TAG SEQRES 1 A 108 MET ALA GLY GLN SER ASP ARG LYS ALA ALA LEU LEU ASP SEQRES 2 A 108 GLN VAL ALA ARG VAL GLY LYS ALA LEU ALA ASN GLY ARG SEQRES 3 A 108 ARG LEU GLN ILE LEU ASP LEU LEU ALA GLN GLY GLU ARG SEQRES 4 A 108 ALA VAL GLU ALA ILE ALA THR ALA THR GLY MET ASN LEU SEQRES 5 A 108 THR THR ALA SER ALA ASN LEU GLN ALA LEU LYS SER GLY SEQRES 6 A 108 GLY LEU VAL GLU ALA ARG ARG GLU GLY THR ARG GLN TYR SEQRES 7 A 108 TYR ARG ILE ALA GLY GLU ASP VAL ALA ARG LEU PHE ALA SEQRES 8 A 108 LEU VAL GLN VAL VAL ALA ASP GLU HIS LEU GLU HIS HIS SEQRES 9 A 108 HIS HIS HIS HIS SEQRES 1 B 108 MET ALA GLY GLN SER ASP ARG LYS ALA ALA LEU LEU ASP SEQRES 2 B 108 GLN VAL ALA ARG VAL GLY LYS ALA LEU ALA ASN GLY ARG SEQRES 3 B 108 ARG LEU GLN ILE LEU ASP LEU LEU ALA GLN GLY GLU ARG SEQRES 4 B 108 ALA VAL GLU ALA ILE ALA THR ALA THR GLY MET ASN LEU SEQRES 5 B 108 THR THR ALA SER ALA ASN LEU GLN ALA LEU LYS SER GLY SEQRES 6 B 108 GLY LEU VAL GLU ALA ARG ARG GLU GLY THR ARG GLN TYR SEQRES 7 B 108 TYR ARG ILE ALA GLY GLU ASP VAL ALA ARG LEU PHE ALA SEQRES 8 B 108 LEU VAL GLN VAL VAL ALA ASP GLU HIS LEU GLU HIS HIS SEQRES 9 B 108 HIS HIS HIS HIS HELIX 1 1 ARG A 7 ALA A 23 1 17 HELIX 2 2 ARG A 27 ALA A 35 1 9 HELIX 3 3 VAL A 41 GLY A 49 1 9 HELIX 4 4 ASN A 51 GLY A 66 1 16 HELIX 5 5 GLY A 83 GLU A 102 1 20 HELIX 6 6 ARG B 7 ALA B 23 1 17 HELIX 7 7 ASN B 24 ALA B 35 1 12 HELIX 8 8 VAL B 41 GLY B 49 1 9 HELIX 9 9 ASN B 51 GLY B 66 1 16 HELIX 10 10 GLY B 83 LEU B 101 1 19 SHEET 1 A 3 ARG A 39 ALA A 40 0 SHEET 2 A 3 ARG A 76 ILE A 81 -1 O TYR A 79 N ARG A 39 SHEET 3 A 3 VAL A 68 GLU A 73 -1 N GLU A 69 O ARG A 80 SHEET 1 B 3 ARG B 39 ALA B 40 0 SHEET 2 B 3 ARG B 76 ILE B 81 -1 O TYR B 79 N ARG B 39 SHEET 3 B 3 VAL B 68 GLU B 73 -1 N GLU B 69 O ARG B 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1