HEADER DNA BINDING PROTEIN 26-JUN-09 2KKP TITLE SOLUTION NMR STRUCTURE OF THE PHAGE INTEGRASE SAM-LIKE DOMAIN FROM TITLE 2 MOTH 1796 FROM MOORELLA THERMOACETICA. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET MTR39K (RESIDUES 64-171). COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM-LIKE DOMAIN SEQUENCE DATABASE RESIDUES 64-171; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOORELLA THERMOACETICA ATCC 39073; SOURCE 3 ORGANISM_TAXID: 264732; SOURCE 4 ATCC: 39073; SOURCE 5 GENE: MOTH 1796, MOTH_1796; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS SAM-LIKE DOMAIN, ALPHA-HELICAL BUNDLE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,H.WANG,C.CICCOSANTI,M.JANG,R.NAIR,B.ROST,G.SWAPNA, AUTHOR 2 T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 08-MAY-24 2KKP 1 REMARK REVDAT 2 16-MAR-22 2KKP 1 REMARK SEQADV REVDAT 1 08-SEP-09 2KKP 0 JRNL AUTH T.A.RAMELOT,H.WANG,C.CICCOSANTI,M.JANG,R.NAIR,B.ROST, JRNL AUTH 2 G.SWAPNA,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF THE PHAGE INTEGRASE SAM-LIKE JRNL TITL 2 DOMAIN FROM MOTH 1796 FROM MOORELLA THERMOACETICA. NORTHEAST JRNL TITL 3 STRUCTURAL GENOMICS CONSORTIUM TARGET MTR39K (RESIDUES JRNL TITL 4 64-171). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN 2.3, CNS 1.2 REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ORIGINAL NOE ASSGNMENTS WERE DONE WITH REMARK 3 CYANA. THIS NOE RESTRAINTS LIST WAS REFINED USING ITERATIVE REMARK 3 CYCLES OF XPLOR-NIH STANDALONE, AND XPLOR+HB AND CNSW REFINEMENT. REMARK 4 REMARK 4 2KKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101240. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 MOTH_1796, 20 MM MES, 200 MM REMARK 210 POTASSIUM CHLORIDE-3, 90% H2O/10% REMARK 210 D2O; 1.1 MM [U-5% 13C; U-99% REMARK 210 15N] MOTH_1796, 20 MM MES, 200 REMARK 210 MM POTASSIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; .9 MM [U-100% 13C; U- REMARK 210 100% 15N] MOTH_1796, 20 MM MES, REMARK 210 200 MM SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 4D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2008, VNMR 6.1C, TOPSPIN REMARK 210 2.1.3, AUTOSTRUCTURE 2.2.1, X- REMARK 210 PLOR NIH, SPARKY 3.113, PSVS, REMARK 210 PDBSTAT 5.1, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 91.35 50.89 REMARK 500 1 ARG A 26 100.17 -172.09 REMARK 500 1 GLN A 27 112.06 65.71 REMARK 500 1 THR A 44 -67.13 -108.07 REMARK 500 1 HIS A 112 174.78 74.71 REMARK 500 1 HIS A 113 95.67 -68.77 REMARK 500 1 HIS A 115 -106.47 -87.59 REMARK 500 1 HIS A 116 163.72 164.64 REMARK 500 2 SER A 5 142.05 -171.40 REMARK 500 2 ILE A 7 102.33 43.57 REMARK 500 2 ALA A 21 -73.32 -68.01 REMARK 500 2 LYS A 22 92.66 59.86 REMARK 500 2 HIS A 24 -60.64 -146.47 REMARK 500 2 SER A 28 36.82 -148.02 REMARK 500 2 GLU A 31 -10.02 70.71 REMARK 500 2 PRO A 109 -80.70 -71.32 REMARK 500 2 HIS A 112 -58.28 75.98 REMARK 500 3 ILE A 7 86.23 -67.96 REMARK 500 3 LYS A 22 92.88 55.82 REMARK 500 3 HIS A 24 143.52 66.46 REMARK 500 3 ARG A 26 175.28 76.41 REMARK 500 3 GLN A 27 93.74 70.60 REMARK 500 3 THR A 44 -66.60 -101.69 REMARK 500 3 HIS A 112 171.70 67.27 REMARK 500 4 PRO A 4 94.13 -65.24 REMARK 500 4 LYS A 22 159.68 67.70 REMARK 500 4 ARG A 26 164.49 68.67 REMARK 500 4 SER A 28 -79.26 -102.16 REMARK 500 4 THR A 29 -32.40 164.33 REMARK 500 4 THR A 44 -67.06 -107.35 REMARK 500 4 PRO A 105 107.29 -43.78 REMARK 500 4 ARG A 107 -166.11 68.22 REMARK 500 4 PRO A 109 -161.69 -102.44 REMARK 500 4 HIS A 113 -85.60 -84.17 REMARK 500 4 HIS A 114 157.09 173.46 REMARK 500 5 ILE A 7 -79.11 -117.41 REMARK 500 5 LYS A 22 94.81 62.48 REMARK 500 5 THR A 29 23.60 -145.83 REMARK 500 5 ARG A 107 -151.44 66.28 REMARK 500 5 HIS A 114 -144.96 58.01 REMARK 500 6 PRO A 23 35.51 -89.38 REMARK 500 6 HIS A 24 -78.90 68.78 REMARK 500 6 THR A 44 -63.35 -107.54 REMARK 500 6 HIS A 115 -82.61 69.85 REMARK 500 6 HIS A 116 -47.52 -166.32 REMARK 500 7 ILE A 7 82.55 -157.40 REMARK 500 7 LEU A 25 -59.83 70.95 REMARK 500 7 GLN A 27 -73.41 -64.77 REMARK 500 7 SER A 28 173.02 64.88 REMARK 500 7 TRP A 30 138.16 72.81 REMARK 500 REMARK 500 THIS ENTRY HAS 171 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16369 RELATED DB: BMRB REMARK 900 RELATED ID: MTR39K RELATED DB: TARGETDB DBREF 2KKP A 2 109 UNP Q2RHJ2 Q2RHJ2_MOOTA 64 171 SEQADV 2KKP MET A 1 UNP Q2RHJ2 INITIATING METHIONINE SEQADV 2KKP LEU A 110 UNP Q2RHJ2 EXPRESSION TAG SEQADV 2KKP GLU A 111 UNP Q2RHJ2 EXPRESSION TAG SEQADV 2KKP HIS A 112 UNP Q2RHJ2 EXPRESSION TAG SEQADV 2KKP HIS A 113 UNP Q2RHJ2 EXPRESSION TAG SEQADV 2KKP HIS A 114 UNP Q2RHJ2 EXPRESSION TAG SEQADV 2KKP HIS A 115 UNP Q2RHJ2 EXPRESSION TAG SEQADV 2KKP HIS A 116 UNP Q2RHJ2 EXPRESSION TAG SEQADV 2KKP HIS A 117 UNP Q2RHJ2 EXPRESSION TAG SEQRES 1 A 117 MET ILE GLU PRO SER LYS ILE THR VAL GLU GLN TRP LEU SEQRES 2 A 117 ASN ARG TRP LEU THR ASP TYR ALA LYS PRO HIS LEU ARG SEQRES 3 A 117 GLN SER THR TRP GLU SER TYR GLU THR VAL LEU ARG LEU SEQRES 4 A 117 HIS VAL ILE PRO THR LEU GLY SER ILE PRO LEU LYS LYS SEQRES 5 A 117 LEU GLN PRO ALA ASP ILE GLN ARG LEU TYR ALA SER LYS SEQRES 6 A 117 LEU GLU SER GLY LEU SER PRO THR ARG VAL ARG TYR ILE SEQRES 7 A 117 HIS VAL VAL LEU HIS GLU ALA MET SER GLN ALA ARG GLU SEQRES 8 A 117 SER GLY LEU LEU LEU GLN ASN PRO THR GLU ALA ALA LYS SEQRES 9 A 117 PRO PRO ARG HIS PRO LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 8 ALA A 21 1 14 HELIX 2 2 GLU A 31 ILE A 42 1 12 HELIX 3 3 GLN A 54 SER A 68 1 15 HELIX 4 4 SER A 71 GLU A 91 1 21 HELIX 5 5 ASN A 98 ALA A 103 5 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1