HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-09 2KKS TITLE SOLUTION STRUCTURE OF PROTEIN DSY2949 FROM DESULFITOBACTERIUM TITLE 2 HAFNIENSE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET DHR27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 138119; SOURCE 4 STRAIN: Y51; SOURCE 5 GENE: DSY2949; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC KEYWDS NESG, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WU,J.L.MILLS,H.WANG,C.CICCOSANTI,M.JIANG,D.SUKUMARAN,Q.ZHANG, AUTHOR 2 R.NAIR,B.ROST,T.ACTON,R.XIAO,G.V.T.SWAPNA,J.EVERETT,G.T.MONTELIONE, AUTHOR 3 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 08-MAY-24 2KKS 1 REMARK REVDAT 5 14-JUN-23 2KKS 1 REMARK REVDAT 4 26-FEB-20 2KKS 1 SEQADV REVDAT 3 07-MAR-12 2KKS 1 AUTHOR JRNL REVDAT 2 13-JUL-11 2KKS 1 VERSN REVDAT 1 25-AUG-09 2KKS 0 JRNL AUTH Y.WU,J.L.MILLS,H.WANG,C.CICCOSANTI,M.JIANG,D.SUKUMARAN, JRNL AUTH 2 Q.ZHANG,R.NAIR,B.ROST,T.ACTON,R.XIAO,G.V.T.SWAPNA,J.EVERETT, JRNL AUTH 3 G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION STRUCTURE OF PROTEIN DSY2949 FROM JRNL TITL 2 DESULFITOBACTERIUM HAFNIENSE. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET DHR27 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN, CNS, PSVS, TALOS REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS), BHATTACHARYA AND MONTELIONE (PSVS), REMARK 3 CORNILESCU, DELAGLIO AND BAX (TALOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KKS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101243. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 0.9 MM REMARK 210 [U-10% 13C; U-100% 15N] PROTEIN, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; SIMNOESY; REMARK 210 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, CYANA, NMRPIPE, REMARK 210 XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 40 HZ3 LYS A 136 1.56 REMARK 500 OE1 GLU A 23 HD1 HIS A 81 1.58 REMARK 500 HG SER A 91 OE2 GLU A 93 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 35 -19.34 75.11 REMARK 500 1 ASN A 46 155.73 70.28 REMARK 500 1 ASP A 58 70.72 47.45 REMARK 500 1 ALA A 85 17.46 -143.93 REMARK 500 1 ARG A 89 144.05 73.48 REMARK 500 1 SER A 102 53.95 -167.51 REMARK 500 1 HIS A 142 -166.26 68.47 REMARK 500 1 HIS A 144 99.67 61.05 REMARK 500 2 PRO A 21 31.40 -95.95 REMARK 500 2 ASP A 33 -152.31 -98.06 REMARK 500 2 ASP A 35 -0.59 -142.61 REMARK 500 2 GLU A 53 -57.82 -141.19 REMARK 500 2 PRO A 101 -4.11 -59.95 REMARK 500 2 HIS A 144 173.90 74.72 REMARK 500 2 HIS A 145 116.18 70.26 REMARK 500 3 ASN A 22 -24.53 178.36 REMARK 500 3 GLU A 23 104.69 75.42 REMARK 500 3 ASP A 35 -22.48 75.53 REMARK 500 3 LEU A 45 -169.69 -114.77 REMARK 500 3 ALA A 85 71.05 -152.41 REMARK 500 3 GLU A 140 159.97 72.76 REMARK 500 3 HIS A 141 -41.31 -179.91 REMARK 500 3 HIS A 142 21.58 -143.88 REMARK 500 3 HIS A 144 -162.82 61.39 REMARK 500 3 HIS A 145 -178.65 72.09 REMARK 500 4 GLU A 23 153.79 75.44 REMARK 500 4 ASP A 33 -156.16 -115.86 REMARK 500 4 ASN A 46 -153.39 -104.53 REMARK 500 4 SER A 51 161.68 56.98 REMARK 500 4 ASP A 58 71.04 45.00 REMARK 500 4 ALA A 85 70.38 -159.47 REMARK 500 4 HIS A 144 23.22 -76.32 REMARK 500 4 HIS A 145 127.43 68.49 REMARK 500 5 PRO A 21 34.05 -92.96 REMARK 500 5 ALA A 24 100.13 61.73 REMARK 500 5 LEU A 45 -169.58 -112.90 REMARK 500 5 LYS A 115 76.96 -152.32 REMARK 500 5 GLU A 140 21.32 45.49 REMARK 500 5 HIS A 142 46.16 -100.29 REMARK 500 5 HIS A 143 85.96 61.86 REMARK 500 5 HIS A 144 76.14 -159.38 REMARK 500 5 HIS A 145 153.09 67.89 REMARK 500 6 MET A 57 -169.88 54.48 REMARK 500 6 ALA A 85 29.12 -146.43 REMARK 500 6 SER A 102 30.20 -157.05 REMARK 500 6 LEU A 139 -166.21 -71.41 REMARK 500 6 GLU A 140 -170.75 68.34 REMARK 500 6 HIS A 145 96.08 49.37 REMARK 500 7 PRO A 21 32.34 -95.41 REMARK 500 7 ASP A 35 13.46 -146.01 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16371 RELATED DB: BMRB REMARK 900 RELATED ID: DHR27 RELATED DB: TARGETDB DBREF 2KKS A 1 138 UNP Q24TA4 Q24TA4_DESHY 1 138 SEQADV 2KKS LEU A 139 UNP Q24TA4 EXPRESSION TAG SEQADV 2KKS GLU A 140 UNP Q24TA4 EXPRESSION TAG SEQADV 2KKS HIS A 141 UNP Q24TA4 EXPRESSION TAG SEQADV 2KKS HIS A 142 UNP Q24TA4 EXPRESSION TAG SEQADV 2KKS HIS A 143 UNP Q24TA4 EXPRESSION TAG SEQADV 2KKS HIS A 144 UNP Q24TA4 EXPRESSION TAG SEQADV 2KKS HIS A 145 UNP Q24TA4 EXPRESSION TAG SEQADV 2KKS HIS A 146 UNP Q24TA4 EXPRESSION TAG SEQRES 1 A 146 MET ILE THR LEU THR LYS LYS GLN MET GLU GLU MET LEU SEQRES 2 A 146 ALA HIS ALA ARG GLN ALA LEU PRO ASN GLU ALA CYS GLY SEQRES 3 A 146 LEU LEU GLY GLY ARG ARG ASP GLY ASP ASP ARG TRP VAL SEQRES 4 A 146 GLU ARG VAL TYR PRO LEU ASN ASN LEU ASP GLN SER PRO SEQRES 5 A 146 GLU HIS PHE SER MET ASP PRO ARG GLU GLN LEU THR ALA SEQRES 6 A 146 VAL LYS ASP MET ARG LYS ASN GLY TRP VAL MET LEU GLY SEQRES 7 A 146 ASN PHE HIS SER HIS PRO ALA THR PRO ALA ARG PRO SER SEQRES 8 A 146 ALA GLU ASP LYS ARG LEU ALA PHE ASP PRO SER LEU SER SEQRES 9 A 146 TYR LEU ILE ILE SER LEU ALA GLU PRO GLN LYS PRO VAL SEQRES 10 A 146 CYS LYS SER PHE LEU ILE LYS LYS ASP GLY VAL ASP GLU SEQRES 11 A 146 GLU GLU ILE ILE LEU LYS GLU GLU LEU GLU HIS HIS HIS SEQRES 12 A 146 HIS HIS HIS HELIX 1 1 LYS A 6 LEU A 20 1 15 HELIX 2 2 ASP A 58 GLY A 73 1 16 HELIX 3 3 SER A 91 ARG A 96 1 6 SHEET 1 A 8 VAL A 128 GLU A 131 0 SHEET 2 A 8 VAL A 117 ILE A 123 -1 N LEU A 122 O ASP A 129 SHEET 3 A 8 SER A 104 SER A 109 -1 N TYR A 105 O PHE A 121 SHEET 4 A 8 VAL A 75 HIS A 83 1 N HIS A 81 O LEU A 106 SHEET 5 A 8 ALA A 24 ASP A 33 -1 N GLY A 30 O VAL A 75 SHEET 6 A 8 ASP A 36 TYR A 43 -1 O TRP A 38 N ARG A 31 SHEET 7 A 8 ILE A 2 THR A 5 1 N THR A 3 O VAL A 39 SHEET 8 A 8 ILE A 133 LYS A 136 1 O ILE A 134 N ILE A 2 CISPEP 1 LEU A 20 PRO A 21 1 5.45 CISPEP 2 LEU A 20 PRO A 21 2 1.93 CISPEP 3 LEU A 20 PRO A 21 3 -1.51 CISPEP 4 LEU A 20 PRO A 21 4 -0.68 CISPEP 5 LEU A 20 PRO A 21 5 3.30 CISPEP 6 LEU A 20 PRO A 21 6 -0.78 CISPEP 7 LEU A 20 PRO A 21 7 3.78 CISPEP 8 LEU A 20 PRO A 21 8 -0.62 CISPEP 9 LEU A 20 PRO A 21 9 5.61 CISPEP 10 LEU A 20 PRO A 21 10 2.68 CISPEP 11 LEU A 20 PRO A 21 11 5.65 CISPEP 12 LEU A 20 PRO A 21 12 1.95 CISPEP 13 LEU A 20 PRO A 21 13 1.94 CISPEP 14 LEU A 20 PRO A 21 14 -1.06 CISPEP 15 LEU A 20 PRO A 21 15 0.07 CISPEP 16 LEU A 20 PRO A 21 16 -0.24 CISPEP 17 LEU A 20 PRO A 21 17 3.72 CISPEP 18 LEU A 20 PRO A 21 18 5.06 CISPEP 19 LEU A 20 PRO A 21 19 1.71 CISPEP 20 LEU A 20 PRO A 21 20 1.99 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1