HEADER DNA BINDING PROTEIN 29-JUN-09 2KKV TITLE SOLUTION NMR STRUCTURE OF AN INTEGRASE DOMAIN FROM PROTEIN SPA4288 TITLE 2 FROM SALMONELLA ENTERICA, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET SLR105H COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 93-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 PARATYPHI A; SOURCE 4 ORGANISM_TAXID: 54388; SOURCE 5 GENE: INT, SPA4288; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS PROTEIN STRUCTURE, PSI, NESGC, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, DNA BINDING KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,Y.WU,D.K.SUKUMARAN,R.L.BELOTE,C.CICCOSANTI,M.JIANG,R.NAIR, AUTHOR 2 B.ROST,T.B.ACTON,R.XIAO,G.V.T.SWAPNA,J.K.EVERETT,G.T.MONTELIONE, AUTHOR 3 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 26-FEB-20 2KKV 1 REMARK SEQADV REVDAT 2 07-MAR-12 2KKV 1 AUTHOR JRNL VERSN REVDAT 1 25-AUG-09 2KKV 0 JRNL AUTH J.L.MILLS,Y.WU,D.K.SUKUMARAN,R.L.BELOTE,C.CICCOSANTI, JRNL AUTH 2 M.JIANG,R.NAIR,B.ROST,T.B.ACTON,R.XIAO,G.V.T.SWAPNA, JRNL AUTH 3 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF AN INTEGRASE DOMAIN FROM PROTEIN JRNL TITL 2 SPA4288 FROM SALMONELLA ENTERICA, NORTHEAST STRUCTURAL JRNL TITL 3 GENOMICS CONSORTIUM TARGET SLR105H JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CNS, PSVS REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS), BHATTACHARYA AND MONTELIONE REMARK 3 (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101246. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 SLR105H, 10 % [U-2H] D2O, 90 % REMARK 210 H2O, 50 UM DSS, 10 MM DTT, 20 UM REMARK 210 ZINC SULFATE, 0.02 % SODIUM REMARK 210 AZIDE, 450 MM SODIUM CHLORIDE, REMARK 210 25 MM SODIUM PHOSPHATE, 90% H2O/ REMARK 210 10% D2O; 0.7 MM [U-5% 13C; U-99% REMARK 210 15N] SLR105H, 10 % [U-2H] D2O, REMARK 210 90 % H2O, 50 UM DSS, 10 MM DTT, REMARK 210 20 UM ZINC SULFATE, 0.02 % REMARK 210 SODIUM AZIDE, 450 MM SODIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HBHA(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D SIMULTANEOUS NCALICARO HH REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, XEASY, SPSCAN, REMARK 210 AUTOASSIGN, CSI, TALOS, CYANA, REMARK 210 MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG23 THR A 53 H SER A 54 1.33 REMARK 500 OE2 GLU A 36 HH12 ARG A 78 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 20 92.87 63.07 REMARK 500 1 THR A 53 -165.14 -72.90 REMARK 500 1 ASP A 93 -57.39 71.16 REMARK 500 1 ASP A 99 -66.35 -123.66 REMARK 500 1 MET A 100 86.39 58.42 REMARK 500 1 ALA A 103 98.74 66.49 REMARK 500 1 SER A 105 -73.05 -151.96 REMARK 500 1 ARG A 110 74.13 55.21 REMARK 500 1 TYR A 112 83.70 62.50 REMARK 500 1 GLU A 115 42.62 -75.83 REMARK 500 1 HIS A 119 107.90 -161.77 REMARK 500 1 HIS A 120 124.86 -176.44 REMARK 500 2 ASN A 20 -80.50 -83.95 REMARK 500 2 LYS A 21 143.42 177.69 REMARK 500 2 ARG A 22 115.78 73.67 REMARK 500 2 SER A 24 54.91 -153.13 REMARK 500 2 PHE A 40 54.42 71.29 REMARK 500 2 SER A 54 -18.01 -49.56 REMARK 500 2 LYS A 68 65.66 -104.98 REMARK 500 2 SER A 105 27.99 -154.96 REMARK 500 2 ALA A 109 37.59 177.99 REMARK 500 2 ARG A 110 -168.76 -127.44 REMARK 500 2 HIS A 111 80.12 63.63 REMARK 500 2 LEU A 114 -69.75 -143.28 REMARK 500 2 HIS A 119 83.31 64.79 REMARK 500 3 GLU A 18 4.45 -63.83 REMARK 500 3 ASN A 20 91.52 70.53 REMARK 500 3 ARG A 22 -73.68 66.66 REMARK 500 3 SER A 54 5.52 -59.11 REMARK 500 3 SER A 94 -52.00 -161.40 REMARK 500 3 ASN A 95 79.28 60.60 REMARK 500 3 PRO A 96 -167.41 -78.91 REMARK 500 3 ALA A 101 76.71 -106.84 REMARK 500 3 LEU A 104 -73.73 -109.00 REMARK 500 3 THR A 107 155.58 72.17 REMARK 500 3 LYS A 108 77.21 54.16 REMARK 500 3 ARG A 110 74.71 44.21 REMARK 500 3 HIS A 111 88.72 -164.54 REMARK 500 4 SER A 4 -72.40 -62.51 REMARK 500 4 ALA A 6 92.88 65.79 REMARK 500 4 TYR A 7 43.11 -81.53 REMARK 500 4 GLU A 18 1.00 -68.10 REMARK 500 4 ARG A 22 81.99 -163.15 REMARK 500 4 THR A 53 -163.79 -72.01 REMARK 500 4 SER A 54 4.70 -65.56 REMARK 500 4 ALA A 97 -2.44 70.79 REMARK 500 4 LYS A 108 178.11 179.67 REMARK 500 4 ALA A 109 -69.10 -161.49 REMARK 500 4 ARG A 110 156.83 179.72 REMARK 500 4 HIS A 111 89.66 74.78 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16373 RELATED DB: BMRB REMARK 900 RELATED ID: SLR105H RELATED DB: TARGETDB DBREF 2KKV A 2 113 UNP Q5PJC5 Q5PJC5_SALPA 93 204 SEQADV 2KKV MET A 1 UNP Q5PJC5 INITIATING METHIONINE SEQADV 2KKV LEU A 114 UNP Q5PJC5 EXPRESSION TAG SEQADV 2KKV GLU A 115 UNP Q5PJC5 EXPRESSION TAG SEQADV 2KKV HIS A 116 UNP Q5PJC5 EXPRESSION TAG SEQADV 2KKV HIS A 117 UNP Q5PJC5 EXPRESSION TAG SEQADV 2KKV HIS A 118 UNP Q5PJC5 EXPRESSION TAG SEQADV 2KKV HIS A 119 UNP Q5PJC5 EXPRESSION TAG SEQADV 2KKV HIS A 120 UNP Q5PJC5 EXPRESSION TAG SEQADV 2KKV HIS A 121 UNP Q5PJC5 EXPRESSION TAG SEQRES 1 A 121 MET GLU ASN SER GLY ALA TYR THR PHE GLU THR ILE ALA SEQRES 2 A 121 ARG GLU TRP HIS GLU SER ASN LYS ARG TRP SER GLU ASP SEQRES 3 A 121 HIS ARG SER ARG VAL LEU ARG TYR LEU GLU LEU TYR ILE SEQRES 4 A 121 PHE PRO HIS ILE GLY SER SER ASP ILE ARG GLN LEU LYS SEQRES 5 A 121 THR SER HIS LEU LEU ALA PRO ILE LYS GLU VAL ASP THR SEQRES 6 A 121 SER GLY LYS HIS ASP VAL ALA GLN ARG LEU GLN GLN ARG SEQRES 7 A 121 VAL THR ALA ILE MET ARG TYR ALA VAL GLN ASN ASP TYR SEQRES 8 A 121 ILE ASP SER ASN PRO ALA SER ASP MET ALA GLY ALA LEU SEQRES 9 A 121 SER THR THR LYS ALA ARG HIS TYR PRO LEU GLU HIS HIS SEQRES 10 A 121 HIS HIS HIS HIS HELIX 1 1 THR A 8 GLU A 18 1 11 HELIX 2 2 SER A 24 PHE A 40 1 17 HELIX 3 3 THR A 53 HIS A 55 5 3 HELIX 4 4 LEU A 56 SER A 66 1 11 HELIX 5 5 LYS A 68 ASN A 89 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1