HEADER LIPID BINDING PROTEIN 29-JUN-09 2KKW TITLE SLAS-MICELLE BOUND ALPHA-SYNUCLEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-SYNUCLEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-A BETA COMPONENT OF AD AMYLOID, NON-A4 COMPONENT OF COMPND 5 AMYLOID PRECURSOR, NACP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNCA, NACP, PARK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-42 KEYWDS PROTEIN-MICELLE INTERACTION, LIPID BINDING PROTEIN EXPDTA SOLUTION NMR; EPR NUMMDL 34 AUTHOR J.RAO,C.C.JAO,B.HEGDE,R.LANGEN,T.S.ULMER REVDAT 4 01-MAY-24 2KKW 1 REMARK REVDAT 3 13-FEB-19 2KKW 1 REMARK REVDAT 2 18-AUG-10 2KKW 1 JRNL REVDAT 1 16-JUN-10 2KKW 0 JRNL AUTH J.N.RAO,C.C.JAO,B.G.HEGDE,R.LANGEN,T.S.ULMER JRNL TITL A COMBINATORIAL NMR AND EPR APPROACH FOR EVALUATING THE JRNL TITL 2 STRUCTURAL ENSEMBLE OF PARTIALLY FOLDED PROTEINS. JRNL REF J.AM.CHEM.SOC. V. 132 8657 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20524659 JRNL DOI 10.1021/JA100646T REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101247. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75 MM [U-100% 13C, U-100% 15N, REMARK 210 U-80% 2H] ALPHA-SYNUCLEIN, 75 MM REMARK 210 SODIUM LAUROYL SARCOSINATE, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TRIPLE RESONANCE; QUANTITATIVE J REMARK 210 CORRELATION HNCO; 4-PULSE DEER REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 8500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 34 REMARK 210 CONFORMERS, SELECTION CRITERIA : ENSEMBLE SUBPOPULATION AVERAGE REMARK 210 REPRESENTATIVES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: EPR EXPERIMENT WAS DONE USING ELEXSYS E 580 SPECTROMETER REMARK 210 AT 0.45 T, 78K, AMBIENT PRESSURE, PH 7.4, IONIC STRENGHT 0.1. REMARK 210 THE EPR SAMPLE CONTAINED 50 UM ALPHA-SYNUCLEIN, 5 MM SODIUM REMARK 210 LAUROYL SARCOSINATE, 30% SUCROSE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 55 H THR A 59 1.49 REMARK 500 O THR A 44 H VAL A 48 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 40 137.57 77.20 REMARK 500 1 PHE A 94 78.11 41.73 REMARK 500 1 ALA A 107 72.14 63.16 REMARK 500 1 ASP A 119 73.90 56.46 REMARK 500 1 GLU A 126 151.54 58.00 REMARK 500 2 VAL A 37 -128.94 -88.41 REMARK 500 3 THR A 33 40.04 -79.69 REMARK 500 3 MET A 116 75.13 -153.71 REMARK 500 3 ASP A 119 70.88 46.00 REMARK 500 3 TYR A 133 9.72 52.16 REMARK 500 4 PHE A 94 -114.37 56.20 REMARK 500 4 ASP A 98 7.92 -69.23 REMARK 500 4 GLN A 99 85.97 55.22 REMARK 500 4 GLU A 104 107.08 59.48 REMARK 500 4 LEU A 113 -50.47 63.03 REMARK 500 4 GLU A 114 23.55 48.78 REMARK 500 4 TYR A 125 103.46 50.02 REMARK 500 4 TYR A 133 -158.88 40.59 REMARK 500 4 GLN A 134 157.23 56.29 REMARK 500 5 TYR A 39 77.75 95.77 REMARK 500 5 PHE A 94 142.42 58.08 REMARK 500 5 ALA A 107 74.42 51.92 REMARK 500 5 GLN A 109 80.61 41.73 REMARK 500 5 ASP A 115 127.14 57.84 REMARK 500 5 ALA A 124 109.05 73.66 REMARK 500 6 TYR A 39 -75.13 -74.19 REMARK 500 6 ASP A 115 90.66 41.82 REMARK 500 6 MET A 116 73.92 65.89 REMARK 500 6 SER A 129 96.15 37.63 REMARK 500 7 PHE A 94 -108.28 40.10 REMARK 500 7 ALA A 107 79.92 40.57 REMARK 500 7 GLU A 114 -7.12 65.24 REMARK 500 7 MET A 116 77.83 83.89 REMARK 500 7 ASP A 119 80.24 -164.70 REMARK 500 8 VAL A 37 44.72 84.17 REMARK 500 8 ALA A 107 69.71 65.20 REMARK 500 8 GLU A 110 93.56 55.18 REMARK 500 8 GLU A 114 3.40 55.71 REMARK 500 8 MET A 116 76.98 40.16 REMARK 500 8 ASP A 119 78.60 -118.75 REMARK 500 8 TYR A 125 97.97 46.80 REMARK 500 8 GLU A 126 -71.56 -99.55 REMARK 500 9 LYS A 34 -11.92 -49.83 REMARK 500 9 PHE A 94 -171.50 42.45 REMARK 500 9 ASP A 98 120.05 57.53 REMARK 500 9 GLU A 123 -118.79 -141.19 REMARK 500 9 ALA A 124 166.81 53.78 REMARK 500 9 TYR A 125 -178.77 47.86 REMARK 500 10 GLU A 35 138.73 -172.64 REMARK 500 10 VAL A 37 -159.62 -110.48 REMARK 500 REMARK 500 THIS ENTRY HAS 183 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16302 RELATED DB: BMRB DBREF 2KKW A 1 140 UNP P37840 SYUA_HUMAN 1 140 SEQRES 1 A 140 MET ASP VAL PHE MET LYS GLY LEU SER LYS ALA LYS GLU SEQRES 2 A 140 GLY VAL VAL ALA ALA ALA GLU LYS THR LYS GLN GLY VAL SEQRES 3 A 140 ALA GLU ALA ALA GLY LYS THR LYS GLU GLY VAL LEU TYR SEQRES 4 A 140 VAL GLY SER LYS THR LYS GLU GLY VAL VAL HIS GLY VAL SEQRES 5 A 140 ALA THR VAL ALA GLU LYS THR LYS GLU GLN VAL THR ASN SEQRES 6 A 140 VAL GLY GLY ALA VAL VAL THR GLY VAL THR ALA VAL ALA SEQRES 7 A 140 GLN LYS THR VAL GLU GLY ALA GLY SER ILE ALA ALA ALA SEQRES 8 A 140 THR GLY PHE VAL LYS LYS ASP GLN LEU GLY LYS ASN GLU SEQRES 9 A 140 GLU GLY ALA PRO GLN GLU GLY ILE LEU GLU ASP MET PRO SEQRES 10 A 140 VAL ASP PRO ASP ASN GLU ALA TYR GLU MET PRO SER GLU SEQRES 11 A 140 GLU GLY TYR GLN ASP TYR GLU PRO GLU ALA HELIX 1 1 ASP A 2 LYS A 32 1 31 HELIX 2 2 SER A 42 THR A 92 1 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1