HEADER PROTEIN BINDING 29-JUN-09 2KL1 TITLE SOLUTION STRUCTURE OF GTR34C FROM GEOBACILLUS THERMODENITRIFICANS. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET GTR34C COMPND MOL_ID: 1; COMPND 2 MOLECULE: YLBL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 125-210; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 420246; SOURCE 4 STRAIN: NG80-2; SOURCE 5 GENE: YLBL, GTNG_0967; SOURCE 6 EXPRESSION_SYSTEM: GEOBACILLUS THERMODENITRIFICANS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 33940; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS STRUCTURE GENOMICS, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PROTEIN KEYWDS 3 BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.LEE,H.WANG,C.CICCOSANTI,M.JIANG,R.NAIR,B.ROST,T.B.ACTON,R.XIAO, AUTHOR 2 G.SWAPNA,J.K.EVERTT,G.T.MONTELIONE,J.H.PRESTEGARD,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2KL1 1 REMARK REVDAT 3 26-FEB-20 2KL1 1 REMARK SEQADV REVDAT 2 13-JUL-11 2KL1 1 VERSN REVDAT 1 14-JUL-09 2KL1 0 JRNL AUTH H.LEE,G.T.MONTELIONE,J.H.PRESTEGARD JRNL TITL SOLUTION STRUCTURE OF GTR34C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, X-PLOR NIH 2.18 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101252. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14 MM [U-100% 13C; U-100% 15N] REMARK 210 GTR34C, 2 % SODIUM AZIDE, 10 MM REMARK 210 DTT, 5 MM CACL, 200 MM SODIUM REMARK 210 CHLORIDE, 20 MM MES, 95% H2O/5% REMARK 210 D2O; 1.14 MM [U-100% 13C; U-100% REMARK 210 15N] GTR34C, 2 % SODIUM AZIDE, REMARK 210 10 MM DTT, 5 MM CACL, 200 MM REMARK 210 SODIUM CHLORIDE, 20 MM MES, 4.2 % REMARK 210 C12E5 PEG/HEXANOL, 95% H2O/5% REMARK 210 D2O; 1.14 MM [U-100% 13C; U-100% REMARK 210 15N] GTR34C, 2 % SODIUM AZIDE, REMARK 210 10 MM DTT, 5 MM CACL, 200 MM REMARK 210 SODIUM CHLORIDE, 20 MM MES, 7 % REMARK 210 NEGATIVELY CHARGED COMPRESSED REMARK 210 POLYACRYLAMIDE GEL-20, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 13C NOESY; 2D 15N HSQCTROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, PSVS, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 LEU A 88 REMARK 465 GLU A 89 REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 31 H GLN A 34 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 36.92 -161.44 REMARK 500 1 GLU A 3 78.26 53.69 REMARK 500 1 LYS A 5 86.67 59.88 REMARK 500 1 VAL A 9 164.92 -45.67 REMARK 500 1 MET A 10 -70.27 -104.87 REMARK 500 1 ALA A 30 168.06 177.93 REMARK 500 1 ASP A 32 22.87 47.79 REMARK 500 2 ALA A 4 155.43 76.08 REMARK 500 2 ALA A 30 163.50 178.95 REMARK 500 2 ASP A 32 15.33 50.83 REMARK 500 2 ALA A 51 124.29 -2.69 REMARK 500 2 PRO A 76 -71.05 -64.44 REMARK 500 2 HIS A 77 10.30 -68.39 REMARK 500 2 HIS A 78 73.95 -157.92 REMARK 500 2 LEU A 84 -86.84 -63.15 REMARK 500 3 ASN A 2 101.06 54.19 REMARK 500 3 ALA A 4 163.01 53.87 REMARK 500 3 LYS A 5 -159.95 56.89 REMARK 500 3 VAL A 9 170.52 -44.47 REMARK 500 3 MET A 10 -65.28 -95.11 REMARK 500 3 PRO A 14 49.36 -56.77 REMARK 500 3 ASN A 15 8.89 -171.18 REMARK 500 4 GLU A 3 76.15 53.60 REMARK 500 4 LYS A 5 88.38 60.30 REMARK 500 4 ASP A 32 11.20 51.05 REMARK 500 4 PRO A 74 -169.49 -73.21 REMARK 500 4 LEU A 84 -83.59 -96.29 REMARK 500 5 ASN A 2 14.75 55.12 REMARK 500 5 GLU A 3 -15.25 64.55 REMARK 500 5 LYS A 5 -52.11 -123.16 REMARK 500 5 VAL A 9 160.15 -46.35 REMARK 500 5 MET A 10 -62.29 -103.21 REMARK 500 5 ALA A 30 163.67 171.12 REMARK 500 6 GLU A 3 -155.83 73.52 REMARK 500 6 ALA A 4 -140.07 -68.80 REMARK 500 6 ALA A 30 154.07 179.02 REMARK 500 6 ASP A 32 17.12 54.52 REMARK 500 6 PRO A 76 -86.16 -44.46 REMARK 500 7 GLU A 3 -76.79 -73.39 REMARK 500 7 ASP A 32 17.16 56.59 REMARK 500 7 HIS A 78 45.12 -164.20 REMARK 500 7 ASN A 80 -8.64 -56.00 REMARK 500 8 ASN A 2 -76.32 -164.59 REMARK 500 8 ARG A 63 -1.35 70.43 REMARK 500 8 HIS A 78 70.07 -118.96 REMARK 500 8 LEU A 84 -89.14 -68.70 REMARK 500 9 ASN A 2 86.18 -151.89 REMARK 500 9 ALA A 4 126.17 -24.00 REMARK 500 9 PRO A 14 163.16 -45.54 REMARK 500 9 ASP A 32 24.20 49.88 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16378 RELATED DB: BMRB REMARK 900 RELATED ID: GTR34C RELATED DB: TARGETDB DBREF 2KL1 A 2 87 UNP A4ILZ1 A4ILZ1_GEOTN 125 210 SEQADV 2KL1 MET A 1 UNP A4ILZ1 INITIATING METHIONINE SEQADV 2KL1 LEU A 88 UNP A4ILZ1 EXPRESSION TAG SEQADV 2KL1 GLU A 89 UNP A4ILZ1 EXPRESSION TAG SEQADV 2KL1 HIS A 90 UNP A4ILZ1 EXPRESSION TAG SEQADV 2KL1 HIS A 91 UNP A4ILZ1 EXPRESSION TAG SEQADV 2KL1 HIS A 92 UNP A4ILZ1 EXPRESSION TAG SEQADV 2KL1 HIS A 93 UNP A4ILZ1 EXPRESSION TAG SEQADV 2KL1 HIS A 94 UNP A4ILZ1 EXPRESSION TAG SEQRES 1 A 94 MET ASN GLU ALA LYS GLY VAL TYR VAL MET SER VAL LEU SEQRES 2 A 94 PRO ASN MET PRO ALA ALA GLY ARG LEU GLU ALA GLY ASP SEQRES 3 A 94 ARG ILE ALA ALA ILE ASP GLY GLN PRO ILE ASN THR SER SEQRES 4 A 94 GLU GLN ILE VAL SER TYR VAL ARG GLU LYS GLN ALA GLY SEQRES 5 A 94 ASP ARG VAL ARG VAL THR PHE ILE ARG ASP ARG LYS GLN SEQRES 6 A 94 HIS GLU ALA GLU LEU VAL LEU LYS PRO PHE PRO HIS HIS SEQRES 7 A 94 PRO ASN GLN ILE GLY LEU GLY VAL THR LEU GLU HIS HIS SEQRES 8 A 94 HIS HIS HIS HELIX 1 1 THR A 38 LYS A 49 1 12 SHEET 1 A 4 VAL A 7 TYR A 8 0 SHEET 2 A 4 ARG A 27 ILE A 31 -1 O ILE A 28 N VAL A 7 SHEET 3 A 4 VAL A 55 ARG A 61 -1 O THR A 58 N ALA A 30 SHEET 4 A 4 LYS A 64 LEU A 70 -1 O ALA A 68 N VAL A 57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1