HEADER TRANSCRIPTION REGULATOR 20-JUL-09 2KM4 TITLE SOLUTION STRUCTURE OF RTT103 CTD INTERACTING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF TY1 TRANSPOSITION PROTEIN 103; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-131; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RTT103, YDR289C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CTD-INTERACTING DOMAIN, RNA POLYMERASE II BINDING PROTEIN, KEYWDS 2 PHOSPHOPROTEIN, TRANSCRIPTION TERMINATION, DNA-BINDING, NUCLEUS, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.M.LUNDE,S.REICHOW,M.KIM,T.C.LEEPER,R.BECKER,S.BURATOWSKI, AUTHOR 2 A.MEINHART,G.VARANI REVDAT 3 01-MAY-24 2KM4 1 SEQADV REVDAT 2 20-OCT-10 2KM4 1 JRNL REVDAT 1 08-SEP-10 2KM4 0 JRNL AUTH B.M.LUNDE,S.L.REICHOW,M.KIM,H.SUH,T.C.LEEPER,F.YANG, JRNL AUTH 2 H.MUTSCHLER,S.BURATOWSKI,A.MEINHART,G.VARANI JRNL TITL COOPERATIVE INTERACTION OF TRANSCRIPTION TERMINATION FACTORS JRNL TITL 2 WITH THE RNA POLYMERASE II C-TERMINAL DOMAIN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1195 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20818393 JRNL DOI 10.1038/NSMB.1893 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101291. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-99% 13C; U-99% 15N] REMARK 210 RTT103-1, 100 MM POTASSIUM REMARK 210 CHLORIDE-2, 35 MM POTASSIUM REMARK 210 PHOSPHATE-3, 95% H2O/5% D2O; 0.5- REMARK 210 1 MM RTT103-4, 100 MM POTASSIUM REMARK 210 CHLORIDE-5, 35 MM POTASSIUM REMARK 210 PHOSPHATE-6, 100 % D2O-7, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 2D 1H-13C HSQC; 2D REMARK 210 1H-1H NOESY; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ; 600 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 92.40 -65.71 REMARK 500 1 ASP A 35 41.73 -96.27 REMARK 500 1 LEU A 48 30.99 -96.96 REMARK 500 2 ASP A 35 44.84 -107.47 REMARK 500 2 LEU A 48 32.37 -94.84 REMARK 500 2 PRO A 99 -177.19 -69.77 REMARK 500 3 SER A 4 103.50 -51.80 REMARK 500 3 ASP A 35 51.65 -116.15 REMARK 500 3 LEU A 48 31.24 -94.45 REMARK 500 4 ASP A 35 44.88 -93.79 REMARK 500 4 LEU A 48 32.01 -95.40 REMARK 500 5 ASP A 35 48.19 -99.21 REMARK 500 5 LEU A 48 31.95 -94.99 REMARK 500 6 GLN A 32 34.56 -95.07 REMARK 500 6 ASP A 35 44.75 -94.49 REMARK 500 6 ILE A 118 -72.77 -51.48 REMARK 500 7 SER A 4 92.18 -65.30 REMARK 500 7 ASP A 35 45.85 -98.48 REMARK 500 7 LEU A 48 30.90 -95.63 REMARK 500 7 ILE A 118 -71.07 -59.26 REMARK 500 8 ASP A 35 42.89 -105.88 REMARK 500 8 ILE A 118 -71.63 -56.95 REMARK 500 9 ASP A 35 45.86 -103.96 REMARK 500 9 LEU A 48 32.01 -98.01 REMARK 500 9 LYS A 75 49.73 -94.00 REMARK 500 10 PHE A 3 176.92 -57.74 REMARK 500 10 ASP A 35 41.60 -93.10 REMARK 500 11 ASP A 35 46.32 -104.24 REMARK 500 12 ASP A 35 52.05 -107.31 REMARK 500 12 LEU A 48 32.37 -97.01 REMARK 500 12 GLN A 74 -167.62 -111.68 REMARK 500 12 LYS A 75 59.44 -110.43 REMARK 500 13 PHE A 3 175.08 -54.88 REMARK 500 13 LEU A 48 32.15 -96.05 REMARK 500 13 ILE A 118 -71.78 -51.74 REMARK 500 14 ASP A 35 40.50 -95.06 REMARK 500 14 ILE A 118 -70.97 -61.27 REMARK 500 15 ASP A 35 45.11 -95.70 REMARK 500 15 PRO A 99 -179.50 -69.80 REMARK 500 16 ASP A 35 44.10 -100.49 REMARK 500 16 LEU A 48 30.94 -99.61 REMARK 500 17 ASP A 35 38.93 -97.29 REMARK 500 17 LEU A 48 32.88 -97.43 REMARK 500 17 ILE A 118 -70.91 -61.31 REMARK 500 18 ASP A 35 44.39 -99.51 REMARK 500 18 LEU A 48 33.44 -98.10 REMARK 500 19 GLN A 32 42.40 -92.22 REMARK 500 19 ASP A 35 52.27 -109.08 REMARK 500 19 GLU A 136 33.48 -95.67 REMARK 500 20 ASP A 35 36.24 -96.45 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KM4 A 1 131 UNP Q05543 RT103_YEAST 1 131 SEQADV 2KM4 ALA A 2 UNP Q05543 PRO 2 CONFLICT SEQADV 2KM4 ALA A 132 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 ALA A 133 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 ALA A 134 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 LEU A 135 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 GLU A 136 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 HIS A 137 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 HIS A 138 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 HIS A 139 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 HIS A 140 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 HIS A 141 UNP Q05543 EXPRESSION TAG SEQADV 2KM4 HIS A 142 UNP Q05543 EXPRESSION TAG SEQRES 1 A 142 MET ALA PHE SER SER GLU GLN PHE THR THR LYS LEU ASN SEQRES 2 A 142 THR LEU GLU ASP SER GLN GLU SER ILE SER SER ALA SER SEQRES 3 A 142 LYS TRP LEU LEU LEU GLN TYR ARG ASP ALA PRO LYS VAL SEQRES 4 A 142 ALA GLU MET TRP LYS GLU TYR MET LEU ARG PRO SER VAL SEQRES 5 A 142 ASN THR ARG ARG LYS LEU LEU GLY LEU TYR LEU MET ASN SEQRES 6 A 142 HIS VAL VAL GLN GLN ALA LYS GLY GLN LYS ILE ILE GLN SEQRES 7 A 142 PHE GLN ASP SER PHE GLY LYS VAL ALA ALA GLU VAL LEU SEQRES 8 A 142 GLY ARG ILE ASN GLN GLU PHE PRO ARG ASP LEU LYS LYS SEQRES 9 A 142 LYS LEU SER ARG VAL VAL ASN ILE LEU LYS GLU ARG ASN SEQRES 10 A 142 ILE PHE SER LYS GLN VAL VAL ASN ASP ILE GLU ARG SER SEQRES 11 A 142 LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 4 THR A 14 1 11 HELIX 2 2 SER A 18 LEU A 31 1 14 HELIX 3 3 GLN A 32 ARG A 34 5 3 HELIX 4 4 ASP A 35 LEU A 48 1 14 HELIX 5 5 ASN A 53 LYS A 72 1 20 HELIX 6 6 GLY A 73 LYS A 75 5 3 HELIX 7 7 ILE A 77 VAL A 86 1 10 HELIX 8 8 VAL A 86 PHE A 98 1 13 HELIX 9 9 PRO A 99 ASN A 117 1 19 HELIX 10 10 SER A 120 GLU A 136 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1