HEADER NEUROPEPTIDE 25-JUL-09 2KM9 TITLE OMEGA CONOTOXIN-FVIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMEGA_CONOTOXIN-FVIA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PEPTIDE SYNTHESIS KEYWDS OMEGA CONOTOXIN, FVIA, NEUROPEPTIDE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.LEE,J.KIM,J.LEE,H.JUNG REVDAT 2 28-SEP-11 2KM9 1 COMPND VERSN REVDAT 1 28-JUL-10 2KM9 0 JRNL AUTH S.LEE,J.LEE,H.JUNG,J.KIM JRNL TITL STRUCTURE OF OMEGA CONOTOXIN-FVIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB101296. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 7MM OMEGA CONOTOXIN-FVIA-1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY; PE-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 21 H GLY A 23 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -85.48 -81.89 REMARK 500 1 SER A 9 -162.21 -118.44 REMARK 500 1 ARG A 10 30.57 -91.04 REMARK 500 1 ILE A 11 -52.52 -126.57 REMARK 500 1 ASN A 14 49.43 -87.40 REMARK 500 1 ARG A 21 170.85 -48.63 REMARK 500 1 SER A 22 57.98 -64.44 REMARK 500 2 LYS A 2 -87.40 -83.75 REMARK 500 2 ILE A 11 -48.65 -131.66 REMARK 500 2 TYR A 13 48.83 -78.35 REMARK 500 2 ASN A 14 46.40 -100.49 REMARK 500 2 ARG A 21 173.82 -51.10 REMARK 500 2 SER A 22 56.64 -64.95 REMARK 500 3 LYS A 2 -61.23 -92.77 REMARK 500 3 ARG A 10 31.55 -90.93 REMARK 500 3 ILE A 11 -60.87 -133.00 REMARK 500 3 ASN A 14 47.33 -109.57 REMARK 500 3 SER A 22 57.47 -65.27 REMARK 500 4 LYS A 2 -73.57 -83.90 REMARK 500 4 SER A 9 -167.71 -115.25 REMARK 500 4 ARG A 10 31.35 -91.26 REMARK 500 4 ILE A 11 -47.82 -135.57 REMARK 500 4 TYR A 13 47.82 -78.62 REMARK 500 4 ASN A 14 46.30 -106.85 REMARK 500 4 ARG A 21 179.78 -53.80 REMARK 500 4 SER A 22 57.70 -63.76 REMARK 500 5 LYS A 2 -96.09 -98.75 REMARK 500 5 ARG A 10 32.16 -92.58 REMARK 500 5 ILE A 11 -40.82 -141.79 REMARK 500 5 TYR A 13 41.93 -79.92 REMARK 500 5 ASN A 14 50.02 -94.61 REMARK 500 5 SER A 22 55.78 -57.52 REMARK 500 6 LYS A 2 -87.66 -73.62 REMARK 500 6 ARG A 10 32.40 -91.61 REMARK 500 6 ILE A 11 -51.28 -125.43 REMARK 500 6 TYR A 13 47.75 -79.53 REMARK 500 6 SER A 22 57.34 -62.30 REMARK 500 7 LYS A 2 -70.29 -76.31 REMARK 500 7 SER A 9 -166.05 -112.09 REMARK 500 7 ARG A 10 33.13 -92.03 REMARK 500 7 ILE A 11 -52.45 -126.77 REMARK 500 7 ARG A 21 -179.95 -52.23 REMARK 500 7 SER A 22 56.34 -64.88 REMARK 500 8 LYS A 2 -88.82 -83.41 REMARK 500 8 SER A 9 -167.38 -118.48 REMARK 500 8 ARG A 10 32.26 -91.95 REMARK 500 8 ILE A 11 -45.04 -133.31 REMARK 500 8 TYR A 13 49.17 -78.87 REMARK 500 8 ASN A 14 48.41 -104.91 REMARK 500 8 SER A 22 56.51 -66.22 REMARK 500 REMARK 500 THIS ENTRY HAS 112 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 10 0.29 SIDE CHAIN REMARK 500 1 ARG A 21 0.24 SIDE CHAIN REMARK 500 2 ARG A 10 0.19 SIDE CHAIN REMARK 500 2 ARG A 21 0.19 SIDE CHAIN REMARK 500 3 ARG A 10 0.21 SIDE CHAIN REMARK 500 3 ARG A 21 0.18 SIDE CHAIN REMARK 500 4 ARG A 10 0.30 SIDE CHAIN REMARK 500 4 ARG A 21 0.26 SIDE CHAIN REMARK 500 5 ARG A 10 0.23 SIDE CHAIN REMARK 500 5 ARG A 21 0.11 SIDE CHAIN REMARK 500 6 ARG A 10 0.27 SIDE CHAIN REMARK 500 6 ARG A 21 0.32 SIDE CHAIN REMARK 500 7 ARG A 10 0.21 SIDE CHAIN REMARK 500 7 ARG A 21 0.26 SIDE CHAIN REMARK 500 8 ARG A 10 0.32 SIDE CHAIN REMARK 500 8 ARG A 21 0.32 SIDE CHAIN REMARK 500 9 ARG A 10 0.31 SIDE CHAIN REMARK 500 9 ARG A 21 0.27 SIDE CHAIN REMARK 500 10 ARG A 10 0.30 SIDE CHAIN REMARK 500 10 ARG A 21 0.18 SIDE CHAIN REMARK 500 11 ARG A 10 0.32 SIDE CHAIN REMARK 500 11 ARG A 21 0.31 SIDE CHAIN REMARK 500 12 ARG A 10 0.32 SIDE CHAIN REMARK 500 12 ARG A 21 0.28 SIDE CHAIN REMARK 500 13 ARG A 10 0.30 SIDE CHAIN REMARK 500 13 ARG A 21 0.30 SIDE CHAIN REMARK 500 14 ARG A 10 0.26 SIDE CHAIN REMARK 500 14 ARG A 21 0.08 SIDE CHAIN REMARK 500 15 ARG A 10 0.16 SIDE CHAIN REMARK 500 15 ARG A 21 0.22 SIDE CHAIN REMARK 500 16 ARG A 10 0.27 SIDE CHAIN REMARK 500 16 ARG A 21 0.32 SIDE CHAIN REMARK 500 17 ARG A 10 0.30 SIDE CHAIN REMARK 500 17 ARG A 21 0.32 SIDE CHAIN REMARK 500 18 ARG A 10 0.29 SIDE CHAIN REMARK 500 18 ARG A 21 0.31 SIDE CHAIN REMARK 500 19 ARG A 10 0.19 SIDE CHAIN REMARK 500 19 ARG A 21 0.21 SIDE CHAIN REMARK 500 20 ARG A 10 0.10 SIDE CHAIN REMARK 500 20 ARG A 21 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OMG RELATED DB: PDB REMARK 900 OMEGA CONOTOXIN MVIIA DBREF 2KM9 A 1 25 PDB 2KM9 2KM9 1 25 SEQRES 1 A 25 CYS LYS GLY THR GLY LYS SER CYS SER ARG ILE ALA TYR SEQRES 2 A 25 ASN CYS CYS THR GLY SER CYS ARG SER GLY LYS CYS SSBOND 1 CYS A 1 CYS A 16 1555 1555 2.02 SSBOND 2 CYS A 8 CYS A 20 1555 1555 2.02 SSBOND 3 CYS A 15 CYS A 25 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1