data_2KMM # _entry.id 2KMM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KMM pdb_00002kmm 10.2210/pdb2kmm/pdb RCSB RCSB101308 ? ? WWPDB D_1000101308 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB PgR122A . unspecified BMRB 16434 . unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KMM _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-07-31 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, Y.' 1 'Ramelot, T.A.' 2 'Cort, J.R.' 3 'Lee, D.' 4 'Ciccosanti, C.' 5 'Hamilton, K.' 6 'Nair, R.' 7 'Rost, B.' 8 'Acton, T.B.' 9 'Xiao, R.' 10 'Swapna, G.' 11 'Everett, J.K.' 12 'Montelione, G.T.' 13 'Kennedy, M.A.' 14 'Northeast Structural Genomics Consortium (NESG)' 15 # _citation.id primary _citation.title ;Solution NMR structure of the TGS domain of PG1808 from Porphyromonas gingivalis. Northeast Structural Genomics Consortium Target PgR122A (418-481) ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, Y.' 1 ? primary 'Ramelot, T.A.' 2 ? primary 'Cort, J.R.' 3 ? primary 'Lee, D.' 4 ? primary 'Ciccosanti, C.' 5 ? primary 'Hamilton, K.' 6 ? primary 'Nair, R.' 7 ? primary 'Rost, B.' 8 ? primary 'Acton, T.B.' 9 ? primary 'Xiao, R.' 10 ? primary 'Swapna, G.' 11 ? primary 'Everett, J.K.' 12 ? primary 'Montelione, G.T.' 13 ? primary 'Kennedy, M.A.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description ;Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase ; _entity.formula_weight 8123.245 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'sequence database residues 418-481' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MEVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLEHHHHHH _entity_poly.pdbx_seq_one_letter_code_can MEVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLEHHHHHH _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier PgR122A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 VAL n 1 4 MET n 1 5 VAL n 1 6 PHE n 1 7 THR n 1 8 PRO n 1 9 LYS n 1 10 GLY n 1 11 GLU n 1 12 ILE n 1 13 LYS n 1 14 ARG n 1 15 LEU n 1 16 PRO n 1 17 GLN n 1 18 GLY n 1 19 ALA n 1 20 THR n 1 21 ALA n 1 22 LEU n 1 23 ASP n 1 24 PHE n 1 25 ALA n 1 26 TYR n 1 27 SER n 1 28 LEU n 1 29 HIS n 1 30 SER n 1 31 ASP n 1 32 LEU n 1 33 GLY n 1 34 ASP n 1 35 HIS n 1 36 CYS n 1 37 ILE n 1 38 GLY n 1 39 ALA n 1 40 LYS n 1 41 VAL n 1 42 ASN n 1 43 HIS n 1 44 LYS n 1 45 LEU n 1 46 VAL n 1 47 PRO n 1 48 LEU n 1 49 SER n 1 50 TYR n 1 51 VAL n 1 52 LEU n 1 53 ASN n 1 54 SER n 1 55 GLY n 1 56 ASP n 1 57 GLN n 1 58 VAL n 1 59 GLU n 1 60 VAL n 1 61 LEU n 1 62 SER n 1 63 SER n 1 64 LYS n 1 65 SER n 1 66 LEU n 1 67 GLU n 1 68 HIS n 1 69 HIS n 1 70 HIS n 1 71 HIS n 1 72 HIS n 1 73 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PG1808, PG_1808, spoT' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Porphyromonas gingivalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 837 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) pMGK' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pET 21-23C' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7MAV5_PORGI _struct_ref.pdbx_db_accession Q7MAV5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKS _struct_ref.pdbx_align_begin 418 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KMM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 65 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7MAV5 _struct_ref_seq.db_align_beg 418 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 481 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 418 _struct_ref_seq.pdbx_auth_seq_align_end 481 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KMM MET A 1 ? UNP Q7MAV5 ? ? 'initiating methionine' 417 1 1 2KMM LEU A 66 ? UNP Q7MAV5 ? ? 'expression tag' 482 2 1 2KMM GLU A 67 ? UNP Q7MAV5 ? ? 'expression tag' 483 3 1 2KMM HIS A 68 ? UNP Q7MAV5 ? ? 'expression tag' 484 4 1 2KMM HIS A 69 ? UNP Q7MAV5 ? ? 'expression tag' 485 5 1 2KMM HIS A 70 ? UNP Q7MAV5 ? ? 'expression tag' 486 6 1 2KMM HIS A 71 ? UNP Q7MAV5 ? ? 'expression tag' 487 7 1 2KMM HIS A 72 ? UNP Q7MAV5 ? ? 'expression tag' 488 8 1 2KMM HIS A 73 ? UNP Q7MAV5 ? ? 'expression tag' 489 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 2 '2D 1H-13C HSQC' 1 4 1 '3D 1H-15N NOESY' 1 5 1 '3D 1H-13C NOESY' 1 6 1 '3D HNCO' 1 7 1 '3D HNCA' 1 8 1 '3D HNCACB' 1 9 1 '3D CBCA(CO)NH' 1 10 1 '3D HN(CO)CA' 1 11 1 '3D HBHA(CO)NH' 1 12 1 '3D H(CCO)NH' 1 13 1 '3D C(CO)NH' 1 14 1 '3D HCCH-TOCSY' 1 15 1 '3D HCCH-COSY' 1 16 3 '3D HCCH-TOCSY' 1 17 3 '4D CC NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.2 _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1.2 mM [U-100% 13C; U-100% 15N] TGS domain of PG1808, 20 mM ammonium acetate, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.9 mM [U-5% 13C; U-100% 15N] TGS domain of PG1808, 20 mM ammonium acetate, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;1.2 mM [U-100% 13C; U-100% 15N] TGS domain of PG1808, 20 mM ammonium acetate, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 100% D2O ; 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 850 Bruker 'AVANCE III' 2 'Bruker AvanceIII' 500 Varian INOVA 3 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KMM _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Xplor-nih-2.20 with HBDB' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 150 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KMM _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KMM _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 2008 1 Varian collection VNMR 6.1C 2 'Bruker Biospin' collection TopSpin 2.1.3 3 'Huang, Tejero, Powers and Montelione' 'data analysis' AutoStructure 2.2.1 4 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.20 5 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.2 6 Goddard 'data analysis' Sparky 3.113 7 'Bhattacharya and Montelione' refinement PSVS 1.3 8 'Zimmerman, Moseley, Kulikowski and Montelione' 'chemical shift assignment' AutoAssign 2.30 9 '(PdbStat)-Roberto Tejero and Gaetano T. Montelione' 'structure solution' PdbStat 5.1 10 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ;TGS domain of PG1808 from Porphyromonas gingivalis ; _exptl.entry_id 2KMM _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KMM _struct.title ;Solution NMR structure of the TGS domain of PG1808 from Porphyromonas gingivalis. Northeast Structural Genomics Consortium Target PgR122A (418-481) ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KMM _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Methods development, TGS domain, predominantly beta-sheet structure, Porphyromonas gingivalis, Hydrolase, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 20 ? HIS A 29 ? THR A 436 HIS A 445 1 ? 10 HELX_P HELX_P2 2 SER A 30 ? HIS A 35 ? SER A 446 HIS A 451 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 3 ? PHE A 6 ? VAL A 419 PHE A 422 A 2 ILE A 12 ? LEU A 15 ? ILE A 428 LEU A 431 B 1 LYS A 44 ? LEU A 45 ? LYS A 460 LEU A 461 B 2 CYS A 36 ? VAL A 41 ? CYS A 452 VAL A 457 B 3 VAL A 58 ? SER A 62 ? VAL A 474 SER A 478 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 3 ? N VAL A 419 O LEU A 15 ? O LEU A 431 B 1 2 O LYS A 44 ? O LYS A 460 N VAL A 41 ? N VAL A 457 B 2 3 N LYS A 40 ? N LYS A 456 O GLU A 59 ? O GLU A 475 # _atom_sites.entry_id 2KMM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 417 417 MET MET A . n A 1 2 GLU 2 418 418 GLU GLU A . n A 1 3 VAL 3 419 419 VAL VAL A . n A 1 4 MET 4 420 420 MET MET A . n A 1 5 VAL 5 421 421 VAL VAL A . n A 1 6 PHE 6 422 422 PHE PHE A . n A 1 7 THR 7 423 423 THR THR A . n A 1 8 PRO 8 424 424 PRO PRO A . n A 1 9 LYS 9 425 425 LYS LYS A . n A 1 10 GLY 10 426 426 GLY GLY A . n A 1 11 GLU 11 427 427 GLU GLU A . n A 1 12 ILE 12 428 428 ILE ILE A . n A 1 13 LYS 13 429 429 LYS LYS A . n A 1 14 ARG 14 430 430 ARG ARG A . n A 1 15 LEU 15 431 431 LEU LEU A . n A 1 16 PRO 16 432 432 PRO PRO A . n A 1 17 GLN 17 433 433 GLN GLN A . n A 1 18 GLY 18 434 434 GLY GLY A . n A 1 19 ALA 19 435 435 ALA ALA A . n A 1 20 THR 20 436 436 THR THR A . n A 1 21 ALA 21 437 437 ALA ALA A . n A 1 22 LEU 22 438 438 LEU LEU A . n A 1 23 ASP 23 439 439 ASP ASP A . n A 1 24 PHE 24 440 440 PHE PHE A . n A 1 25 ALA 25 441 441 ALA ALA A . n A 1 26 TYR 26 442 442 TYR TYR A . n A 1 27 SER 27 443 443 SER SER A . n A 1 28 LEU 28 444 444 LEU LEU A . n A 1 29 HIS 29 445 445 HIS HIS A . n A 1 30 SER 30 446 446 SER SER A . n A 1 31 ASP 31 447 447 ASP ASP A . n A 1 32 LEU 32 448 448 LEU LEU A . n A 1 33 GLY 33 449 449 GLY GLY A . n A 1 34 ASP 34 450 450 ASP ASP A . n A 1 35 HIS 35 451 451 HIS HIS A . n A 1 36 CYS 36 452 452 CYS CYS A . n A 1 37 ILE 37 453 453 ILE ILE A . n A 1 38 GLY 38 454 454 GLY GLY A . n A 1 39 ALA 39 455 455 ALA ALA A . n A 1 40 LYS 40 456 456 LYS LYS A . n A 1 41 VAL 41 457 457 VAL VAL A . n A 1 42 ASN 42 458 458 ASN ASN A . n A 1 43 HIS 43 459 459 HIS HIS A . n A 1 44 LYS 44 460 460 LYS LYS A . n A 1 45 LEU 45 461 461 LEU LEU A . n A 1 46 VAL 46 462 462 VAL VAL A . n A 1 47 PRO 47 463 463 PRO PRO A . n A 1 48 LEU 48 464 464 LEU LEU A . n A 1 49 SER 49 465 465 SER SER A . n A 1 50 TYR 50 466 466 TYR TYR A . n A 1 51 VAL 51 467 467 VAL VAL A . n A 1 52 LEU 52 468 468 LEU LEU A . n A 1 53 ASN 53 469 469 ASN ASN A . n A 1 54 SER 54 470 470 SER SER A . n A 1 55 GLY 55 471 471 GLY GLY A . n A 1 56 ASP 56 472 472 ASP ASP A . n A 1 57 GLN 57 473 473 GLN GLN A . n A 1 58 VAL 58 474 474 VAL VAL A . n A 1 59 GLU 59 475 475 GLU GLU A . n A 1 60 VAL 60 476 476 VAL VAL A . n A 1 61 LEU 61 477 477 LEU LEU A . n A 1 62 SER 62 478 478 SER SER A . n A 1 63 SER 63 479 479 SER SER A . n A 1 64 LYS 64 480 480 LYS LYS A . n A 1 65 SER 65 481 481 SER SER A . n A 1 66 LEU 66 482 482 LEU LEU A . n A 1 67 GLU 67 483 483 GLU GLU A . n A 1 68 HIS 68 484 484 HIS HIS A . n A 1 69 HIS 69 485 485 HIS HIS A . n A 1 70 HIS 70 486 486 HIS HIS A . n A 1 71 HIS 71 487 487 HIS HIS A . n A 1 72 HIS 72 488 488 HIS HIS A . n A 1 73 HIS 73 489 489 HIS HIS A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'TGS domain of PG1808-1' 1.2 ? mM '[U-100% 13C; U-100% 15N]' 1 'ammonium acetate-2' 20 ? mM ? 1 'sodium chloride-3' 200 ? mM ? 1 'calcium chloride-4' 5 ? mM ? 1 DTT-5 10 ? mM ? 1 'sodium azide-6' 0.02 ? % ? 1 'TGS domain of PG1808-7' 0.9 ? mM '[U-5% 13C; U-100% 15N]' 2 'ammonium acetate-8' 20 ? mM ? 2 'sodium chloride-9' 200 ? mM ? 2 'calcium chloride-10' 5 ? mM ? 2 DTT-11 10 ? mM ? 2 'sodium azide-12' 0.02 ? % ? 2 'TGS domain of PG1808-13' 1.2 ? mM '[U-100% 13C; U-100% 15N]' 3 'ammonium acetate-14' 20 ? mM ? 3 'sodium chloride-15' 200 ? mM ? 3 'calcium chloride-16' 5 ? mM ? 3 DTT-17 10 ? mM ? 3 'sodium azide-18' 0.02 ? % ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 18 O A HIS 484 ? ? H A HIS 486 ? ? 1.59 2 19 HD1 A HIS 445 ? ? H A SER 446 ? ? 1.21 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 444 ? ? -68.16 -73.77 2 1 HIS A 459 ? ? 55.33 10.38 3 1 LYS A 480 ? ? 39.14 34.63 4 1 HIS A 485 ? ? 55.67 19.11 5 2 LEU A 444 ? ? -48.44 -81.10 6 2 HIS A 445 ? ? -151.24 20.46 7 2 SER A 446 ? ? 68.52 -37.72 8 2 HIS A 459 ? ? 54.86 13.82 9 2 LYS A 480 ? ? -53.57 98.98 10 2 SER A 481 ? ? -173.28 70.56 11 2 HIS A 484 ? ? 41.36 90.35 12 2 HIS A 486 ? ? 51.14 179.82 13 2 HIS A 487 ? ? 55.06 166.71 14 3 LEU A 444 ? ? -64.08 -70.93 15 3 SER A 446 ? ? -92.45 -71.01 16 3 HIS A 459 ? ? 56.41 14.04 17 3 SER A 481 ? ? -146.31 -124.11 18 3 LEU A 482 ? ? 59.20 1.30 19 3 HIS A 485 ? ? 69.42 127.27 20 3 HIS A 486 ? ? 52.12 92.65 21 3 HIS A 488 ? ? -151.90 -1.77 22 4 LEU A 444 ? ? -68.96 -77.98 23 4 HIS A 445 ? ? -124.29 -151.18 24 4 SER A 446 ? ? -128.54 -70.49 25 4 HIS A 451 ? ? -78.60 28.04 26 4 HIS A 459 ? ? 57.15 12.03 27 4 HIS A 487 ? ? 52.71 72.94 28 5 ALA A 435 ? ? -59.36 173.23 29 5 SER A 446 ? ? -101.58 -61.72 30 5 HIS A 459 ? ? 56.94 12.99 31 5 SER A 479 ? ? -77.27 32.68 32 5 SER A 481 ? ? -46.09 107.88 33 5 LEU A 482 ? ? 56.29 6.12 34 5 GLU A 483 ? ? 46.81 -168.51 35 6 SER A 446 ? ? -103.41 -60.53 36 6 HIS A 459 ? ? 54.17 13.27 37 6 SER A 479 ? ? 54.45 17.80 38 7 HIS A 445 ? ? -162.12 -120.30 39 7 SER A 446 ? ? -158.83 -68.77 40 7 HIS A 459 ? ? 57.55 16.27 41 7 GLU A 483 ? ? 55.14 166.33 42 7 HIS A 488 ? ? 45.71 95.48 43 8 HIS A 445 ? ? -161.97 -120.20 44 8 SER A 446 ? ? -152.93 -76.53 45 8 HIS A 459 ? ? 58.83 13.64 46 8 SER A 479 ? ? -75.82 30.19 47 8 GLU A 483 ? ? 57.54 104.87 48 9 HIS A 445 ? ? -161.93 -126.78 49 9 SER A 446 ? ? -146.63 -64.70 50 9 HIS A 451 ? ? -103.29 42.35 51 9 HIS A 459 ? ? 53.13 13.16 52 9 LYS A 480 ? ? 46.40 90.85 53 9 HIS A 484 ? ? -141.35 23.72 54 9 HIS A 486 ? ? 55.58 84.29 55 10 ALA A 435 ? ? -59.30 170.90 56 10 LEU A 444 ? ? -72.04 -76.71 57 10 HIS A 459 ? ? 58.49 13.39 58 11 ALA A 435 ? ? -52.09 172.39 59 11 HIS A 445 ? ? -173.68 -130.46 60 11 SER A 446 ? ? -145.42 -64.45 61 11 HIS A 459 ? ? 55.20 18.45 62 11 LYS A 480 ? ? -62.32 -144.58 63 11 GLU A 483 ? ? 56.95 160.81 64 12 LEU A 444 ? ? -69.38 -84.86 65 12 HIS A 445 ? ? -111.95 -151.19 66 12 SER A 446 ? ? -127.32 -73.99 67 12 HIS A 451 ? ? -76.77 26.22 68 12 HIS A 459 ? ? 58.94 13.13 69 12 HIS A 484 ? ? -173.24 124.80 70 12 HIS A 485 ? ? -154.93 21.67 71 12 HIS A 488 ? ? 56.17 10.93 72 13 HIS A 445 ? ? -173.49 -119.35 73 13 SER A 446 ? ? -155.62 -64.95 74 13 HIS A 459 ? ? 57.86 8.17 75 13 LYS A 480 ? ? -71.38 -168.66 76 13 GLU A 483 ? ? 56.15 153.13 77 13 HIS A 484 ? ? 48.78 12.10 78 13 HIS A 486 ? ? 45.37 -165.06 79 14 HIS A 445 ? ? -166.01 -166.10 80 14 HIS A 459 ? ? 55.70 12.24 81 14 SER A 479 ? ? -98.43 43.34 82 14 GLU A 483 ? ? -60.44 -112.29 83 14 HIS A 484 ? ? 57.62 120.24 84 14 HIS A 487 ? ? -171.25 130.86 85 14 HIS A 488 ? ? 52.06 8.22 86 15 LEU A 444 ? ? -52.59 -105.29 87 15 SER A 446 ? ? 70.81 -55.80 88 15 HIS A 459 ? ? 56.21 13.01 89 15 LYS A 480 ? ? -60.83 -80.06 90 15 HIS A 486 ? ? 54.89 -92.61 91 16 HIS A 445 ? ? -160.02 -167.34 92 16 LYS A 480 ? ? 52.66 108.51 93 16 HIS A 487 ? ? -141.70 44.96 94 17 LEU A 444 ? ? -65.92 -75.86 95 17 HIS A 459 ? ? 54.21 15.19 96 17 SER A 481 ? ? -64.03 71.10 97 17 HIS A 485 ? ? -58.38 -77.42 98 17 HIS A 486 ? ? 47.00 18.34 99 17 HIS A 487 ? ? 59.64 -70.44 100 18 LEU A 444 ? ? -71.88 -75.37 101 18 HIS A 459 ? ? 56.86 15.07 102 18 SER A 481 ? ? -59.04 -151.38 103 18 LEU A 482 ? ? 47.78 84.22 104 18 HIS A 485 ? ? 69.38 -48.67 105 18 HIS A 487 ? ? 45.86 -176.91 106 19 LEU A 444 ? ? -64.21 -74.91 107 19 HIS A 459 ? ? 55.77 17.56 108 19 SER A 481 ? ? -159.24 -36.06 109 19 GLU A 483 ? ? 54.54 -120.91 110 19 HIS A 484 ? ? 48.45 12.28 111 19 HIS A 486 ? ? 50.29 86.55 112 20 LEU A 444 ? ? -73.78 -76.72 113 20 HIS A 459 ? ? 57.90 12.98 114 20 SER A 479 ? ? -70.55 37.84 115 20 SER A 481 ? ? -171.42 -131.90 116 20 HIS A 487 ? ? 59.43 135.56 #