HEADER TOXIN 04-AUG-09 2KMT TITLE NMR SOLUTION STRUCTURE OF VIBRIO FISCHERI CCDB COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCDB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO FISCHERI; SOURCE 3 ORGANISM_TAXID: 668; SOURCE 4 GENE: CCDB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PKK223-3 KEYWDS TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.ZANGGER REVDAT 4 14-JUN-23 2KMT 1 REMARK REVDAT 3 26-FEB-20 2KMT 1 REMARK REVDAT 2 02-MAR-10 2KMT 1 JRNL REVDAT 1 01-DEC-09 2KMT 0 JRNL AUTH N.DE JONGE,W.HOHLWEG,A.GARCIA-PINO,M.RESPONDEK,L.BUTS, JRNL AUTH 2 S.HAESAERTS,J.LAH,K.ZANGGER,R.LORIS JRNL TITL STRUCTURAL AND THERMODYNAMIC CHARACTERIZATION OF VIBRIO JRNL TITL 2 FISCHERI CCDB. JRNL REF J.BIOL.CHEM. V. 285 5606 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 19959472 JRNL DOI 10.1074/JBC.M109.068429 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON, REMARK 3 WARREN (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000101315. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM POTASSIUM PHOSPHATE-1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD3 LYS B 10 H ASP B 11 1.32 REMARK 500 O ILE B 95 H ASP B 99 1.47 REMARK 500 O ILE A 95 H ASP A 99 1.50 REMARK 500 O ASP B 99 HG1 THR B 103 1.51 REMARK 500 O ASP A 99 HG1 THR A 103 1.53 REMARK 500 O SER A 14 H TYR A 18 1.57 REMARK 500 O ILE A 98 H ILE A 102 1.58 REMARK 500 O TYR B 7 H PHE B 21 1.58 REMARK 500 O SER A 88 H ARG A 91 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 69.30 -69.22 REMARK 500 1 GLN A 3 135.64 157.25 REMARK 500 1 PHE A 4 -6.24 73.96 REMARK 500 1 ASN A 9 98.58 -24.71 REMARK 500 1 LYS A 10 -82.68 11.99 REMARK 500 1 VAL A 24 87.48 -156.69 REMARK 500 1 GLN A 25 -118.41 178.61 REMARK 500 1 SER A 26 93.19 -46.32 REMARK 500 1 LEU A 29 32.76 -90.47 REMARK 500 1 ASP A 47 118.09 71.80 REMARK 500 1 HIS A 53 -46.71 -177.71 REMARK 500 1 CYS A 55 89.71 62.59 REMARK 500 1 MET A 72 132.17 60.88 REMARK 500 1 THR A 73 141.70 -172.04 REMARK 500 1 PRO A 76 147.11 -32.20 REMARK 500 1 LEU A 80 47.67 -69.59 REMARK 500 1 SER A 81 142.92 51.59 REMARK 500 1 PRO A 83 95.99 -23.11 REMARK 500 1 ASN A 85 -156.79 -164.10 REMARK 500 1 ALA A 97 -70.42 -44.96 REMARK 500 1 GLN B 3 -90.41 -170.63 REMARK 500 1 LYS B 8 -95.04 -70.08 REMARK 500 1 LYS B 10 -30.73 -36.71 REMARK 500 1 LYS B 12 -16.34 -46.53 REMARK 500 1 GLN B 25 -124.88 -176.73 REMARK 500 1 SER B 26 119.84 -31.27 REMARK 500 1 ASN B 33 13.74 -165.72 REMARK 500 1 PRO B 39 100.03 -46.92 REMARK 500 1 ASP B 47 117.36 74.06 REMARK 500 1 LYS B 49 44.30 -92.36 REMARK 500 1 HIS B 53 -67.74 -91.97 REMARK 500 1 CYS B 55 101.08 -50.03 REMARK 500 1 GLN B 71 -65.72 -125.65 REMARK 500 1 MET B 72 112.30 61.41 REMARK 500 1 SER B 81 131.26 55.68 REMARK 500 1 PRO B 83 103.10 -34.66 REMARK 500 1 ASN B 85 -153.40 -163.62 REMARK 500 2 SER A 2 72.54 -175.70 REMARK 500 2 GLN A 3 -24.86 166.66 REMARK 500 2 PHE A 4 63.82 -156.25 REMARK 500 2 ASN A 9 118.92 -5.10 REMARK 500 2 LYS A 10 -48.28 -15.23 REMARK 500 2 GLN A 25 -92.95 133.49 REMARK 500 2 SER A 26 94.28 -68.80 REMARK 500 2 LEU A 29 39.00 -91.31 REMARK 500 2 ASN A 33 -32.46 -137.26 REMARK 500 2 PRO A 39 76.51 -55.31 REMARK 500 2 ASP A 47 119.55 76.66 REMARK 500 2 LYS A 49 32.31 -167.33 REMARK 500 2 HIS A 53 -70.00 -177.69 REMARK 500 REMARK 500 THIS ENTRY HAS 790 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16135 RELATED DB: BMRB DBREF 2KMT A 1 105 UNP Q84B82 Q84B82_VIBFI 1 105 DBREF 2KMT B 1 105 UNP Q84B82 Q84B82_VIBFI 1 105 SEQRES 1 A 105 MET SER GLN PHE THR LEU TYR LYS ASN LYS ASP LYS SER SEQRES 2 A 105 SER ALA LYS THR TYR PRO TYR PHE VAL ASP VAL GLN SER SEQRES 3 A 105 ASP LEU LEU ASP ASN LEU ASN THR ARG LEU VAL ILE PRO SEQRES 4 A 105 LEU THR PRO ILE GLU LEU LEU ASP LYS LYS ALA PRO SER SEQRES 5 A 105 HIS LEU CYS PRO THR ILE HIS ILE ASP GLU GLY ASP PHE SEQRES 6 A 105 ILE MET LEU THR GLN GLN MET THR SER VAL PRO VAL LYS SEQRES 7 A 105 ILE LEU SER GLU PRO VAL ASN GLU LEU SER THR PHE ARG SEQRES 8 A 105 ASN GLU ILE ILE ALA ALA ILE ASP PHE LEU ILE THR GLY SEQRES 9 A 105 ILE SEQRES 1 B 105 MET SER GLN PHE THR LEU TYR LYS ASN LYS ASP LYS SER SEQRES 2 B 105 SER ALA LYS THR TYR PRO TYR PHE VAL ASP VAL GLN SER SEQRES 3 B 105 ASP LEU LEU ASP ASN LEU ASN THR ARG LEU VAL ILE PRO SEQRES 4 B 105 LEU THR PRO ILE GLU LEU LEU ASP LYS LYS ALA PRO SER SEQRES 5 B 105 HIS LEU CYS PRO THR ILE HIS ILE ASP GLU GLY ASP PHE SEQRES 6 B 105 ILE MET LEU THR GLN GLN MET THR SER VAL PRO VAL LYS SEQRES 7 B 105 ILE LEU SER GLU PRO VAL ASN GLU LEU SER THR PHE ARG SEQRES 8 B 105 ASN GLU ILE ILE ALA ALA ILE ASP PHE LEU ILE THR GLY SEQRES 9 B 105 ILE HELIX 1 1 ASP A 11 THR A 17 5 7 HELIX 2 2 PRO A 76 LEU A 80 5 5 HELIX 3 3 PHE A 90 ILE A 102 1 13 HELIX 4 4 ASP B 11 THR B 17 5 7 HELIX 5 5 LYS B 78 LEU B 80 5 3 HELIX 6 6 LEU B 87 THR B 89 5 3 HELIX 7 7 PHE B 90 ILE B 102 1 13 SHEET 1 A 2 LEU A 6 TYR A 7 0 SHEET 2 A 2 PHE A 21 VAL A 22 -1 O PHE A 21 N TYR A 7 SHEET 1 B 2 LEU A 36 VAL A 37 0 SHEET 2 B 2 THR A 73 SER A 74 -1 O THR A 73 N VAL A 37 SHEET 1 C 3 LEU A 40 THR A 41 0 SHEET 2 C 3 GLY A 63 MET A 67 -1 O ILE A 66 N THR A 41 SHEET 3 C 3 THR A 57 ILE A 60 -1 N ILE A 60 O GLY A 63 SHEET 1 D 2 LEU B 6 TYR B 7 0 SHEET 2 D 2 PHE B 21 VAL B 22 -1 O PHE B 21 N TYR B 7 SHEET 1 E 2 THR B 34 VAL B 37 0 SHEET 2 E 2 THR B 73 PRO B 76 -1 O THR B 73 N VAL B 37 SHEET 1 F 2 THR B 57 ILE B 60 0 SHEET 2 F 2 GLY B 63 ILE B 66 -1 O PHE B 65 N ILE B 58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1