data_2KNF # _entry.id 2KNF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KNF pdb_00002knf 10.2210/pdb2knf/pdb RCSB RCSB101337 ? ? WWPDB D_1000101337 ? ? BMRB 16466 ? ? # _pdbx_database_related.db_id 16466 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KNF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-08-21 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Battistel, M.D.' 1 'Grishaev, A.' 2 'An, S.A.' 3 'Castellino, F.J.' 4 'Llinas, M.' 5 # _citation.id primary _citation.title 'Solution structure and functional characterization of human plasminogen kringle 5.' _citation.journal_abbrev Biochemistry _citation.journal_volume 48 _citation.page_first 10208 _citation.page_last 10219 _citation.year 2009 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19821587 _citation.pdbx_database_id_DOI 10.1021/bi901433n # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Battistel, M.D.' 1 ? primary 'Grishaev, A.' 2 ? primary 'An, S.S.' 3 ? primary 'Castellino, F.J.' 4 ? primary 'Llinas, M.' 5 ? # _cell.entry_id 2KNF _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KNF _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Plasminogen _entity.formula_weight 9569.584 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation A14V _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNADCMFGNGKGYRGKRVTTVTGTPCQDWAAQEPHRHSIFTPETNPRAGLEKNYCRNPDGDVGGPWCYTTNPRKLYDYCD VPQCAA ; _entity_poly.pdbx_seq_one_letter_code_can ;SNADCMFGNGKGYRGKRVTTVTGTPCQDWAAQEPHRHSIFTPETNPRAGLEKNYCRNPDGDVGGPWCYTTNPRKLYDYCD VPQCAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ASP n 1 5 CYS n 1 6 MET n 1 7 PHE n 1 8 GLY n 1 9 ASN n 1 10 GLY n 1 11 LYS n 1 12 GLY n 1 13 TYR n 1 14 ARG n 1 15 GLY n 1 16 LYS n 1 17 ARG n 1 18 VAL n 1 19 THR n 1 20 THR n 1 21 VAL n 1 22 THR n 1 23 GLY n 1 24 THR n 1 25 PRO n 1 26 CYS n 1 27 GLN n 1 28 ASP n 1 29 TRP n 1 30 ALA n 1 31 ALA n 1 32 GLN n 1 33 GLU n 1 34 PRO n 1 35 HIS n 1 36 ARG n 1 37 HIS n 1 38 SER n 1 39 ILE n 1 40 PHE n 1 41 THR n 1 42 PRO n 1 43 GLU n 1 44 THR n 1 45 ASN n 1 46 PRO n 1 47 ARG n 1 48 ALA n 1 49 GLY n 1 50 LEU n 1 51 GLU n 1 52 LYS n 1 53 ASN n 1 54 TYR n 1 55 CYS n 1 56 ARG n 1 57 ASN n 1 58 PRO n 1 59 ASP n 1 60 GLY n 1 61 ASP n 1 62 VAL n 1 63 GLY n 1 64 GLY n 1 65 PRO n 1 66 TRP n 1 67 CYS n 1 68 TYR n 1 69 THR n 1 70 THR n 1 71 ASN n 1 72 PRO n 1 73 ARG n 1 74 LYS n 1 75 LEU n 1 76 TYR n 1 77 ASP n 1 78 TYR n 1 79 CYS n 1 80 ASP n 1 81 VAL n 1 82 PRO n 1 83 GLN n 1 84 CYS n 1 85 ALA n 1 86 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PLG _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain GS115 _entity_src_gen.pdbx_host_org_variant '(Met+)' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLMN_HUMAN _struct_ref.pdbx_db_accession P00747 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DCMFGNGKGYRGKRATTVTGTPCQDWAAQEPHRHSIFTPETNPRAGLEKNYCRNPDGDVGGPWCYTTNPRKLYDYCDVPQ CAA ; _struct_ref.pdbx_align_begin 480 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KNF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00747 _struct_ref_seq.db_align_beg 480 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 562 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 82 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KNF SER A 1 ? UNP P00747 ? ? 'expression tag' -4 1 1 2KNF ASN A 2 ? UNP P00747 ? ? 'expression tag' -3 2 1 2KNF ALA A 3 ? UNP P00747 ? ? 'expression tag' -2 3 1 2KNF VAL A 18 ? UNP P00747 ALA 494 'engineered mutation' 14 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D DQF-COSY' 1 4 1 '2D 1H-1H NOESY' 1 5 1 '3D HNHA' 1 6 1 '3D 1H-15N NOESY' 1 7 1 '3D 1H-15N TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '50 mM sodium phosphate, 11 mM AMCHA, 2.2 mM rK5, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2KNF _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KNF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KNF _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Linge, J.P. et al.' 'chemical shift assignment' ARIA ? 1 'Linge, J.P. et al.' refinement ARIA ? 2 'Linge, J.P. et al.' 'structure solution' ARIA ? 3 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KNF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KNF _struct.title 'Solution structure and functional characterization of human plasminogen kringle 5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KNF _struct_keywords.pdbx_keywords 'BLOOD CLOTTING' _struct_keywords.text ;Blood coagulation, Cleavage on pair of basic residues, Disease mutation, Disulfide bond, Fibrinolysis, Glycoprotein, Hydrolase, Kringle, Phosphoprotein, Polymorphism, Protease, Secreted, Serine protease, Thrombophilia, Tissue remodeling, Zymogen, antiangiogenic, BLOOD CLOTTING ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 1 A CYS 80 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 67 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 79 SG ? ? A CYS 51 A CYS 75 1_555 ? ? ? ? ? ? ? 2.021 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 1 0.72 2 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 2 0.73 3 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 3 0.53 4 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 4 1.18 5 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 5 1.27 6 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 6 -0.69 7 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 7 0.65 8 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 8 2.35 9 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 9 1.67 10 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 10 -0.20 11 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 11 0.06 12 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 12 1.64 13 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 13 0.80 14 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 14 1.15 15 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 15 1.64 16 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 16 1.55 17 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 17 0.18 18 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 18 1.26 19 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 19 0.76 20 GLU 33 A . ? GLU 29 A PRO 34 A ? PRO 30 A 20 1.37 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 66 ? TYR A 68 ? TRP A 62 TYR A 64 A 2 TYR A 76 ? TYR A 78 ? TYR A 72 TYR A 74 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id CYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 67 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id CYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 63 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ASP _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 77 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASP _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 73 # _atom_sites.entry_id 2KNF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -4 -4 SER SER A . n A 1 2 ASN 2 -3 -3 ASN ASN A . n A 1 3 ALA 3 -2 -2 ALA ALA A . n A 1 4 ASP 4 -1 -1 ASP ASP A . n A 1 5 CYS 5 1 1 CYS CYS A . n A 1 6 MET 6 2 2 MET MET A . n A 1 7 PHE 7 3 3 PHE PHE A . n A 1 8 GLY 8 4 4 GLY GLY A . n A 1 9 ASN 9 5 5 ASN ASN A . n A 1 10 GLY 10 6 6 GLY GLY A . n A 1 11 LYS 11 7 7 LYS LYS A . n A 1 12 GLY 12 8 8 GLY GLY A . n A 1 13 TYR 13 9 9 TYR TYR A . n A 1 14 ARG 14 10 10 ARG ARG A . n A 1 15 GLY 15 11 11 GLY GLY A . n A 1 16 LYS 16 12 12 LYS LYS A . n A 1 17 ARG 17 13 13 ARG ARG A . n A 1 18 VAL 18 14 14 VAL VAL A . n A 1 19 THR 19 15 15 THR THR A . n A 1 20 THR 20 16 16 THR THR A . n A 1 21 VAL 21 17 17 VAL VAL A . n A 1 22 THR 22 18 18 THR THR A . n A 1 23 GLY 23 19 19 GLY GLY A . n A 1 24 THR 24 20 20 THR THR A . n A 1 25 PRO 25 21 21 PRO PRO A . n A 1 26 CYS 26 22 22 CYS CYS A . n A 1 27 GLN 27 23 23 GLN GLN A . n A 1 28 ASP 28 24 24 ASP ASP A . n A 1 29 TRP 29 25 25 TRP TRP A . n A 1 30 ALA 30 26 26 ALA ALA A . n A 1 31 ALA 31 27 27 ALA ALA A . n A 1 32 GLN 32 28 28 GLN GLN A . n A 1 33 GLU 33 29 29 GLU GLU A . n A 1 34 PRO 34 30 30 PRO PRO A . n A 1 35 HIS 35 31 31 HIS HIS A . n A 1 36 ARG 36 32 32 ARG ARG A . n A 1 37 HIS 37 33 33 HIS HIS A . n A 1 38 SER 38 34 34 SER SER A . n A 1 39 ILE 39 35 35 ILE ILE A . n A 1 40 PHE 40 36 36 PHE PHE A . n A 1 41 THR 41 37 37 THR THR A . n A 1 42 PRO 42 38 38 PRO PRO A . n A 1 43 GLU 43 39 39 GLU GLU A . n A 1 44 THR 44 40 40 THR THR A . n A 1 45 ASN 45 41 41 ASN ASN A . n A 1 46 PRO 46 42 42 PRO PRO A . n A 1 47 ARG 47 43 43 ARG ARG A . n A 1 48 ALA 48 44 44 ALA ALA A . n A 1 49 GLY 49 45 45 GLY GLY A . n A 1 50 LEU 50 46 46 LEU LEU A . n A 1 51 GLU 51 47 47 GLU GLU A . n A 1 52 LYS 52 48 48 LYS LYS A . n A 1 53 ASN 53 49 49 ASN ASN A . n A 1 54 TYR 54 50 50 TYR TYR A . n A 1 55 CYS 55 51 51 CYS CYS A . n A 1 56 ARG 56 52 52 ARG ARG A . n A 1 57 ASN 57 53 53 ASN ASN A . n A 1 58 PRO 58 54 54 PRO PRO A . n A 1 59 ASP 59 55 55 ASP ASP A . n A 1 60 GLY 60 56 56 GLY GLY A . n A 1 61 ASP 61 57 57 ASP ASP A . n A 1 62 VAL 62 58 58 VAL VAL A . n A 1 63 GLY 63 59 59 GLY GLY A . n A 1 64 GLY 64 60 60 GLY GLY A . n A 1 65 PRO 65 61 61 PRO PRO A . n A 1 66 TRP 66 62 62 TRP TRP A . n A 1 67 CYS 67 63 63 CYS CYS A . n A 1 68 TYR 68 64 64 TYR TYR A . n A 1 69 THR 69 65 65 THR THR A . n A 1 70 THR 70 66 66 THR THR A . n A 1 71 ASN 71 67 67 ASN ASN A . n A 1 72 PRO 72 68 68 PRO PRO A . n A 1 73 ARG 73 69 69 ARG ARG A . n A 1 74 LYS 74 70 70 LYS LYS A . n A 1 75 LEU 75 71 71 LEU LEU A . n A 1 76 TYR 76 72 72 TYR TYR A . n A 1 77 ASP 77 73 73 ASP ASP A . n A 1 78 TYR 78 74 74 TYR TYR A . n A 1 79 CYS 79 75 75 CYS CYS A . n A 1 80 ASP 80 76 76 ASP ASP A . n A 1 81 VAL 81 77 77 VAL VAL A . n A 1 82 PRO 82 78 78 PRO PRO A . n A 1 83 GLN 83 79 79 GLN GLN A . n A 1 84 CYS 84 80 80 CYS CYS A . n A 1 85 ALA 85 81 81 ALA ALA A . n A 1 86 ALA 86 82 82 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2021-10-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' Other 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif 6 4 'Structure model' database_2 7 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_struct_ref_seq_dif.details' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'sodium phosphate' 50 ? mM ? 1 AMCHA 11 ? mM ? 1 rK5 2.2 ? mM ? 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H A GLN 23 ? ? O A TYR 64 ? ? 1.59 2 2 H A GLN 23 ? ? O A TYR 64 ? ? 1.58 3 3 HG23 A THR 20 ? ? HB2 A ASN 67 ? ? 1.34 4 3 HG2 A GLU 47 ? ? HD3 A LYS 48 ? ? 1.34 5 3 H A GLN 23 ? ? O A TYR 64 ? ? 1.58 6 5 H A GLN 23 ? ? O A TYR 64 ? ? 1.58 7 6 HG23 A THR 20 ? ? HB2 A ASN 67 ? ? 1.35 8 6 H A GLN 23 ? ? O A TYR 64 ? ? 1.57 9 7 H A GLN 23 ? ? O A TYR 64 ? ? 1.58 10 8 H A GLN 23 ? ? O A TYR 64 ? ? 1.57 11 9 HG21 A THR 20 ? ? HB2 A ASN 67 ? ? 1.29 12 9 H A GLN 23 ? ? O A TYR 64 ? ? 1.58 13 10 H A GLN 23 ? ? O A TYR 64 ? ? 1.57 14 11 H A GLN 23 ? ? O A TYR 64 ? ? 1.57 15 12 H A GLN 23 ? ? O A TYR 64 ? ? 1.56 16 13 H A GLN 23 ? ? O A TYR 64 ? ? 1.57 17 14 H A GLN 23 ? ? O A TYR 64 ? ? 1.57 18 15 HG3 A GLU 47 ? ? HD2 A TYR 50 ? ? 1.32 19 15 H A GLN 23 ? ? O A TYR 64 ? ? 1.57 20 16 H A GLN 23 ? ? O A TYR 64 ? ? 1.59 21 17 HG22 A THR 15 ? ? HA2 A GLY 19 ? ? 1.08 22 17 H A GLN 23 ? ? O A TYR 64 ? ? 1.57 23 18 H A GLN 23 ? ? O A TYR 64 ? ? 1.56 24 19 HZ2 A LYS 70 ? ? OD2 A ASP 73 ? ? 1.56 25 19 H A GLN 23 ? ? O A TYR 64 ? ? 1.58 26 20 H A GLN 23 ? ? O A TYR 64 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 10 ? ? -108.27 45.18 2 1 LYS A 12 ? ? -148.87 20.06 3 1 PRO A 30 ? ? -89.43 32.10 4 1 SER A 34 ? ? -75.23 29.63 5 1 PRO A 42 ? ? -71.16 36.61 6 1 LYS A 48 ? ? 50.75 -107.57 7 1 PRO A 68 ? ? -65.75 0.04 8 1 ASP A 76 ? ? -119.69 71.47 9 2 TYR A 9 ? ? -65.42 98.49 10 2 ARG A 10 ? ? -102.96 44.47 11 2 LYS A 12 ? ? -144.35 15.60 12 2 PRO A 30 ? ? -90.41 37.05 13 2 SER A 34 ? ? -77.29 35.46 14 2 PRO A 42 ? ? -71.04 35.39 15 2 LYS A 48 ? ? 50.65 -124.96 16 2 PRO A 68 ? ? -65.02 0.21 17 2 ASP A 76 ? ? -114.57 73.82 18 2 ALA A 81 ? ? -85.10 49.60 19 3 ASP A -1 ? ? -90.45 51.41 20 3 LYS A 12 ? ? -141.73 13.89 21 3 SER A 34 ? ? -81.74 30.49 22 3 LYS A 48 ? ? 44.12 -106.46 23 3 PRO A 68 ? ? -69.10 4.62 24 3 ASP A 76 ? ? -115.70 60.99 25 4 ARG A 10 ? ? -102.24 51.26 26 4 LYS A 12 ? ? -142.21 16.79 27 4 SER A 34 ? ? -74.10 31.42 28 4 PRO A 42 ? ? -77.53 20.33 29 4 LYS A 48 ? ? 48.63 -105.98 30 4 ASN A 49 ? ? -141.67 11.62 31 4 PRO A 68 ? ? -68.66 5.95 32 4 ASP A 76 ? ? -118.76 60.71 33 5 ASP A -1 ? ? -80.43 48.12 34 5 LYS A 12 ? ? -140.48 19.04 35 5 VAL A 14 ? ? -140.29 33.62 36 5 PRO A 30 ? ? -90.04 31.98 37 5 SER A 34 ? ? -78.19 35.84 38 5 PRO A 42 ? ? -64.48 4.15 39 5 LYS A 48 ? ? 49.96 -113.65 40 5 ASN A 49 ? ? -140.69 19.63 41 6 LYS A 12 ? ? -150.29 22.07 42 6 PRO A 30 ? ? -94.24 35.65 43 6 SER A 34 ? ? -77.47 39.11 44 6 LYS A 48 ? ? 51.82 -111.47 45 6 THR A 66 ? ? -83.86 33.54 46 6 PRO A 68 ? ? -70.00 5.71 47 6 ASP A 76 ? ? -112.92 56.20 48 6 ALA A 81 ? ? -93.33 58.97 49 7 LYS A 12 ? ? -145.07 20.94 50 7 SER A 34 ? ? -77.89 32.15 51 7 PRO A 42 ? ? -71.49 31.61 52 7 LYS A 48 ? ? 46.74 -113.08 53 7 THR A 66 ? ? -84.27 31.26 54 7 PRO A 68 ? ? -68.39 2.21 55 7 ALA A 81 ? ? -88.39 43.86 56 8 LYS A 12 ? ? -150.46 24.69 57 8 SER A 34 ? ? -75.61 34.85 58 8 PRO A 42 ? ? -79.52 32.56 59 8 LYS A 48 ? ? 58.39 -123.64 60 8 ASN A 53 ? ? -119.61 78.93 61 8 VAL A 58 ? ? -75.79 24.99 62 8 PRO A 68 ? ? -68.52 3.64 63 8 ASP A 76 ? ? -117.43 70.48 64 9 ARG A 10 ? ? -112.00 51.47 65 9 LYS A 12 ? ? -151.84 20.43 66 9 PRO A 30 ? ? -89.92 33.59 67 9 HIS A 33 ? ? -155.02 89.43 68 9 SER A 34 ? ? -73.79 34.23 69 9 PRO A 42 ? ? -77.81 39.15 70 9 ARG A 43 ? ? -141.56 -16.01 71 9 LYS A 48 ? ? 55.14 -116.15 72 9 PRO A 68 ? ? -66.83 1.98 73 9 ASP A 76 ? ? -117.89 72.44 74 10 THR A 16 ? ? -75.15 -169.69 75 10 SER A 34 ? ? -79.61 33.78 76 10 LYS A 48 ? ? 53.39 -115.58 77 10 PRO A 68 ? ? -65.91 4.96 78 10 ASP A 76 ? ? -115.47 64.49 79 10 ALA A 81 ? ? -104.14 68.39 80 11 LYS A 12 ? ? -140.68 14.60 81 11 SER A 34 ? ? -75.70 23.06 82 11 LYS A 48 ? ? 54.93 -112.15 83 11 VAL A 58 ? ? -76.47 34.05 84 11 ASP A 76 ? ? -109.38 60.19 85 12 ARG A 10 ? ? -106.34 46.40 86 12 LYS A 12 ? ? -149.86 22.82 87 12 SER A 34 ? ? -77.79 28.51 88 12 PRO A 42 ? ? -69.81 15.98 89 12 LYS A 48 ? ? 52.07 -125.55 90 12 VAL A 58 ? ? -76.04 35.08 91 12 PRO A 68 ? ? -67.04 4.88 92 12 ASP A 76 ? ? -95.48 32.15 93 12 ALA A 81 ? ? -85.48 46.00 94 13 ARG A 10 ? ? -109.18 42.54 95 13 LYS A 12 ? ? -148.08 16.54 96 13 PRO A 30 ? ? -88.37 31.82 97 13 SER A 34 ? ? -79.80 35.81 98 13 LYS A 48 ? ? 50.95 -115.26 99 13 PRO A 68 ? ? -67.28 2.74 100 13 ASP A 76 ? ? -117.43 70.28 101 14 TYR A 9 ? ? -65.95 98.18 102 14 ARG A 10 ? ? -103.11 46.60 103 14 LYS A 12 ? ? -150.15 23.56 104 14 VAL A 14 ? ? -140.86 31.32 105 14 THR A 16 ? ? -69.85 -172.83 106 14 SER A 34 ? ? -79.08 35.89 107 14 PRO A 42 ? ? -77.20 42.26 108 14 LYS A 48 ? ? 48.40 -104.40 109 14 CYS A 51 ? ? -49.44 151.98 110 14 VAL A 58 ? ? -75.85 49.33 111 14 ASP A 76 ? ? -118.84 65.82 112 14 ALA A 81 ? ? -93.43 55.22 113 15 THR A 16 ? ? -69.97 -171.54 114 15 PRO A 42 ? ? -76.27 20.80 115 15 LYS A 48 ? ? 45.98 -110.79 116 15 PRO A 68 ? ? -66.63 2.83 117 15 ALA A 81 ? ? -86.09 44.60 118 16 LYS A 12 ? ? -141.16 17.93 119 16 SER A 34 ? ? -77.71 27.75 120 16 PRO A 42 ? ? -77.82 23.45 121 16 LYS A 48 ? ? 51.49 -111.29 122 17 ASP A -1 ? ? -99.78 59.42 123 17 ARG A 10 ? ? -106.45 40.59 124 17 LYS A 12 ? ? -151.24 23.59 125 17 SER A 34 ? ? -78.27 35.46 126 17 LYS A 48 ? ? 56.06 -118.08 127 17 PRO A 68 ? ? -69.47 6.70 128 17 ASP A 76 ? ? -112.85 67.26 129 17 ALA A 81 ? ? -80.73 48.59 130 18 ASP A -1 ? ? -90.35 59.40 131 18 LYS A 12 ? ? -149.07 23.71 132 18 PRO A 30 ? ? -89.68 31.07 133 18 SER A 34 ? ? -82.15 32.13 134 18 LYS A 48 ? ? 49.67 -111.05 135 18 VAL A 58 ? ? -75.91 31.32 136 18 PRO A 68 ? ? -66.46 2.39 137 18 ASP A 76 ? ? -116.89 70.50 138 19 TYR A 9 ? ? -64.38 99.41 139 19 ARG A 10 ? ? -104.30 46.35 140 19 LYS A 12 ? ? -145.87 20.26 141 19 PRO A 30 ? ? -91.80 33.38 142 19 SER A 34 ? ? -80.12 32.98 143 19 LYS A 48 ? ? 48.24 -110.32 144 19 ASN A 49 ? ? -140.18 17.84 145 19 PRO A 68 ? ? -68.27 4.96 146 19 ASP A 76 ? ? -115.27 72.31 147 20 ARG A 10 ? ? -107.63 49.30 148 20 LYS A 12 ? ? -150.73 22.78 149 20 VAL A 14 ? ? -140.06 30.86 150 20 PRO A 30 ? ? -77.93 20.46 151 20 SER A 34 ? ? -78.07 33.10 152 20 PRO A 42 ? ? -77.90 25.75 153 20 LYS A 48 ? ? 46.84 -109.62 154 20 THR A 66 ? ? -84.41 35.00 #