HEADER TRANSFERASE 08-SEP-09 2KO1 TITLE SOLUTION NMR STRUCTURE OF THE ACT DOMAIN FROM GTP PYROPHOSPHOKINASE OF TITLE 2 CHLOROBIUM TEPIDUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 CTR148A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CTR148A; COMPND 5 EC: 2.7.6.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROBACULUM TEPIDUM; SOURCE 3 ORGANISM_TAXID: 1097; SOURCE 4 STRAIN: TLS; SOURCE 5 GENE: CT1545, RELA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS HOMODIMER, ALPHA+BETA, KINASE, TRANSFERASE, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,E.GARCIA,H.WANG,C.CICCOSANTI,M.JIANG,R.NAIR,B.ROST, AUTHOR 2 T.B.ACTON,R.XIAO,J.K.EVERETT,H.LEE,J.H.PRESTEGARD,G.T.MONTELIONE, AUTHOR 3 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 20-OCT-21 2KO1 1 REMARK SEQADV REVDAT 1 29-SEP-09 2KO1 0 JRNL AUTH A.ELETSKY,E.GARCIA,H.WANG,C.CICCOSANTI,M.JIANG,R.NAIR, JRNL AUTH 2 B.ROST,T.B.ACTON,R.XIAO,J.K.EVERETT,H.LEE,J.PRESTEGARD, JRNL AUTH 3 G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF THE ACT DOMAIN FROM GTP JRNL TITL 2 PYROPHOSPHOKINASE OF CHLOROBIUM TEPIDUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 2.1B, CNS 1.2.1 REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY WITH CYANA V2.1 AND CYANA V3.0 USING NOE-BASED REMARK 3 CONSTRAINTS, PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS, REMARK 3 AND RDCS FROM TWO ALIGNMENT MEDIA. THE 20 CONFORMERS OUT OF 100 REMARK 3 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY REMARK 3 SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS REMARK 3 WITH PARAM19 FORCE FIELD. REMARK 4 REMARK 4 2KO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000101358. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 225 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 13C; U-100% 15N] REMARK 210 CTR148A, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 0.05 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-5% 13C; U-100% REMARK 210 15N] CTR148A, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 0.05 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-100% 13C; U-100% REMARK 210 15N] CTR148A, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 0.05 % SODIUM AZIDE, 0.5 MM REMARK 210 CTR148A, 90% H2O/10% D2O; 0.3 MM REMARK 210 [U-5% 13C; U-100% 15N] CTR148A, REMARK 210 18 MM MES, 180 MM SODIUM REMARK 210 CHLORIDE, 4.5 MM CALCIUM REMARK 210 CHLORIDE, 9 MM DTT, 45 UM DSS, REMARK 210 0.045 % SODIUM AZIDE, 4 % REMARK 210 POLYETHYLENE GLYCOL, 84% H2O/16% REMARK 210 D2O; 0.45 MM [U-5% 13C; U-100% REMARK 210 15N] CTR148A, 18 MM MES, 180 MM REMARK 210 SODIUM CHLORIDE, 4.5 MM CALCIUM REMARK 210 CHLORIDE, 9 MM DTT, 45 UM DSS, REMARK 210 0.045 % SODIUM AZIDE, 7 % REMARK 210 POLYACRYLAMIDE, 86% H2O/14% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D 15N T1; 1D 15N T2; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-13C CT-HSQC ALIPHATIC; 2D REMARK 210 1H-13C CT-HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-COSY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N/13C NOESY; REMARK 210 2D 1H-13C CT-HSQC METHYL; 2D 1H- REMARK 210 15N HSQC J-MODULATED; 3D 1H-13C REMARK 210 X-FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PROSA 6.4, CARA 1.8.4, PINE 1.0, REMARK 210 TALOS+ 1.2009.0721.18, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.2.1, PSVS 1.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 3 121.05 -172.42 REMARK 500 1 ASP A 14 85.59 -65.04 REMARK 500 1 ASN A 16 73.99 -56.06 REMARK 500 1 LYS A 41 -74.70 -116.69 REMARK 500 1 ASN B 16 69.01 -62.32 REMARK 500 1 ASP B 42 -31.40 70.11 REMARK 500 1 HIS B 86 95.86 71.62 REMARK 500 2 GLU A 82 27.63 -78.09 REMARK 500 2 THR B 2 33.08 -144.52 REMARK 500 2 ASN B 16 48.14 -72.61 REMARK 500 3 ASP A 30 34.08 -86.84 REMARK 500 3 ASN A 80 97.13 -69.43 REMARK 500 3 HIS A 86 108.41 -56.40 REMARK 500 3 SER B 79 -71.49 69.84 REMARK 500 3 HIS B 86 43.65 -90.77 REMARK 500 4 ASP A 30 -2.09 69.42 REMARK 500 4 ASP B 14 97.81 -67.87 REMARK 500 4 ASP B 30 35.26 -86.79 REMARK 500 4 ASP B 42 -72.97 62.61 REMARK 500 5 ASN A 16 48.50 -77.40 REMARK 500 5 THR B 2 -35.59 -160.90 REMARK 500 5 GLU B 82 -89.54 58.46 REMARK 500 5 HIS B 83 -26.34 68.25 REMARK 500 5 HIS B 85 98.48 -67.94 REMARK 500 6 ASN A 16 22.08 41.84 REMARK 500 6 ASP A 42 19.79 57.61 REMARK 500 6 HIS A 86 77.43 58.24 REMARK 500 6 ASP B 14 46.32 -79.43 REMARK 500 6 ASN B 16 64.88 -67.08 REMARK 500 6 GLU B 82 16.39 -140.05 REMARK 500 7 ASP A 14 45.78 -78.56 REMARK 500 7 ILE A 33 94.49 -67.33 REMARK 500 7 HIS A 86 -155.53 -96.31 REMARK 500 7 SER B 79 -66.41 66.56 REMARK 500 7 HIS B 85 39.14 -91.25 REMARK 500 8 HIS A 85 -71.12 48.38 REMARK 500 8 ASP B 14 47.79 -77.95 REMARK 500 8 ASN B 16 73.98 -63.68 REMARK 500 8 GLU B 82 31.84 -93.30 REMARK 500 8 HIS B 83 66.37 -107.55 REMARK 500 8 HIS B 84 48.11 -150.24 REMARK 500 9 THR A 2 33.65 -93.89 REMARK 500 9 HIS A 87 88.83 67.65 REMARK 500 9 HIS B 83 37.18 -79.11 REMARK 500 10 LYS A 41 -145.98 -119.64 REMARK 500 10 ASP A 42 86.62 -51.70 REMARK 500 10 ASP B 42 -32.80 71.05 REMARK 500 10 HIS B 86 79.58 -69.57 REMARK 500 11 ILE A 33 94.75 -65.33 REMARK 500 11 ASP A 42 -28.43 70.78 REMARK 500 REMARK 500 THIS ENTRY HAS 107 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CTR148A RELATED DB: TARGETDB REMARK 900 RELATED ID: 3IBW RELATED DB: PDB REMARK 900 X-RAY STRUCTURE DBREF 2KO1 A 2 80 UNP Q8KC80 Q8KC80_CHLTE 653 731 DBREF 2KO1 B 2 80 UNP Q8KC80 Q8KC80_CHLTE 653 731 SEQADV 2KO1 MET A 1 UNP Q8KC80 INITIATING METHIONINE SEQADV 2KO1 ASN A 16 UNP Q8KC80 ILE 667 ENGINEERED MUTATION SEQADV 2KO1 LEU A 81 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 GLU A 82 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS A 83 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS A 84 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS A 85 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS A 86 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS A 87 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS A 88 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 MET B 1 UNP Q8KC80 INITIATING METHIONINE SEQADV 2KO1 ASN B 16 UNP Q8KC80 ILE 667 ENGINEERED MUTATION SEQADV 2KO1 LEU B 81 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 GLU B 82 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS B 83 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS B 84 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS B 85 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS B 86 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS B 87 UNP Q8KC80 EXPRESSION TAG SEQADV 2KO1 HIS B 88 UNP Q8KC80 EXPRESSION TAG SEQRES 1 A 88 MET THR ASP PHE LEU ALA GLY ILE ARG ILE VAL GLY GLU SEQRES 2 A 88 ASP LYS ASN GLY MET THR ASN GLN ILE THR GLY VAL ILE SEQRES 3 A 88 SER LYS PHE ASP THR ASN ILE ARG THR ILE VAL LEU ASN SEQRES 4 A 88 ALA LYS ASP GLY ILE PHE THR CYS ASN LEU MET ILE PHE SEQRES 5 A 88 VAL LYS ASN THR ASP LYS LEU THR THR LEU MET ASP LYS SEQRES 6 A 88 LEU ARG LYS VAL GLN GLY VAL PHE THR VAL GLU ARG LEU SEQRES 7 A 88 SER ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 88 MET THR ASP PHE LEU ALA GLY ILE ARG ILE VAL GLY GLU SEQRES 2 B 88 ASP LYS ASN GLY MET THR ASN GLN ILE THR GLY VAL ILE SEQRES 3 B 88 SER LYS PHE ASP THR ASN ILE ARG THR ILE VAL LEU ASN SEQRES 4 B 88 ALA LYS ASP GLY ILE PHE THR CYS ASN LEU MET ILE PHE SEQRES 5 B 88 VAL LYS ASN THR ASP LYS LEU THR THR LEU MET ASP LYS SEQRES 6 B 88 LEU ARG LYS VAL GLN GLY VAL PHE THR VAL GLU ARG LEU SEQRES 7 B 88 SER ASN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLY A 17 SER A 27 1 11 HELIX 2 2 ASN A 55 ARG A 67 1 13 HELIX 3 3 GLY B 17 LYS B 28 1 12 HELIX 4 4 ASN B 55 ARG B 67 1 13 SHEET 1 A 8 VAL A 72 LEU A 78 0 SHEET 2 A 8 PHE A 4 GLU A 13 -1 N ARG A 9 O GLU A 76 SHEET 3 A 8 ILE A 44 VAL A 53 -1 O VAL A 53 N PHE A 4 SHEET 4 A 8 ILE A 33 ALA A 40 -1 N VAL A 37 O ASN A 48 SHEET 5 A 8 ILE B 33 LYS B 41 -1 O ALA B 40 N ARG A 34 SHEET 6 A 8 ILE B 44 VAL B 53 -1 O ASN B 48 N VAL B 37 SHEET 7 A 8 PHE B 4 GLU B 13 -1 N ILE B 10 O CYS B 47 SHEET 8 A 8 VAL B 72 LEU B 78 -1 O GLU B 76 N ARG B 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1