HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-OCT-09 2KPU TITLE NMR STRUCTURE OF YBBR FAMILY PROTEIN DHAF_0833 (RESIDUES 32-118) FROM TITLE 2 DESULFITOBACTERIUM HAFNIENSE DCB-2: NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET DHR29B COMPND MOL_ID: 1; COMPND 2 MOLECULE: YBBR FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 32-118; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB-2; SOURCE 5 GENE: DHAF_0833, DHAF_0833 (32-118); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,T.A.RAMELOT,Y.YANG,R.L.BELOTE,C.CICCOSANTI,J.HALEEMA, AUTHOR 2 T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 08-MAY-24 2KPU 1 REMARK REVDAT 4 14-JUN-23 2KPU 1 REMARK REVDAT 3 26-FEB-20 2KPU 1 REMARK SEQADV REVDAT 2 25-MAY-11 2KPU 1 JRNL REVDAT 1 08-DEC-09 2KPU 0 JRNL AUTH A.W.BARB,J.R.CORT,J.SEETHARAMAN,S.LEW,H.W.LEE,T.ACTON, JRNL AUTH 2 R.XIAO,M.A.KENNEDY,L.TONG,G.T.MONTELIONE,J.H.PRESTEGARD JRNL TITL STRUCTURES OF DOMAINS I AND IV FROM YBBR ARE REPRESENTATIVE JRNL TITL 2 OF A WIDELY DISTRIBUTED PROTEIN FAMILY. JRNL REF PROTEIN SCI. V. 20 396 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21154411 JRNL DOI 10.1002/PRO.571 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE, CNS, PSVS REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS), BHATTACHARYA AND MONTELIONE REMARK 3 (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000101423. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.23 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 DHAF_0833 (32-118), 20 MM REMARK 210 AMMONIUM ACETATE, 200 MM SODIUM REMARK 210 CHLORIDE-3, 10 MM CALCIUM REMARK 210 CHLORIDE-4, 0.02 % SODIUM AZIDE- REMARK 210 5, 95% H2O/5% D2O; 0.8 MM [U-100% REMARK 210 13C; U-100% 15N] DHAF_0833 (32- REMARK 210 118), 20 MM AMMONIUM ACETATE, REMARK 210 200 MM SODIUM CHLORIDE, 10 MM REMARK 210 CALCIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 100% D2O; 0.8 MM [5% 13C REMARK 210 FROM 5% U-13C GLUCOSE IN GROWTH REMARK 210 MEDIUM; U-100% 15N] DHAF_0833 REMARK 210 (32-118), 20 MM AMMONIUM ACETATE, REMARK 210 200 MM SODIUM CHLORIDE, 10 MM REMARK 210 CALCIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 4D 1H-13C-13C- REMARK 210 1H HMQC-NOESY-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, NMRPIPE, FELIX, REMARK 210 SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOW ENERGY, FEW RESTRAINT REMARK 210 VIOLATIONS, FAVORABLE GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 80 25.21 -144.55 REMARK 500 1 HIS A 95 -65.97 -91.98 REMARK 500 2 ASP A 8 85.46 52.32 REMARK 500 2 PRO A 31 -157.71 -89.49 REMARK 500 2 ASN A 41 80.47 -160.92 REMARK 500 2 HIS A 94 110.13 68.25 REMARK 500 3 SER A 2 -30.60 -148.13 REMARK 500 3 LEU A 55 51.97 -105.60 REMARK 500 3 ASN A 74 -2.78 76.31 REMARK 500 3 VAL A 78 -63.36 -102.54 REMARK 500 3 HIS A 94 -76.71 -67.99 REMARK 500 3 HIS A 95 -36.79 -178.28 REMARK 500 4 ARG A 7 -78.95 63.71 REMARK 500 4 SER A 43 -68.70 -131.64 REMARK 500 4 ILE A 44 117.56 64.91 REMARK 500 4 ASN A 74 -41.19 76.80 REMARK 500 4 VAL A 78 -70.89 -114.62 REMARK 500 5 PRO A 60 100.28 -49.84 REMARK 500 5 ASN A 74 -39.73 74.37 REMARK 500 5 HIS A 95 107.97 -164.85 REMARK 500 6 SER A 2 -67.49 -95.29 REMARK 500 6 ASN A 19 77.75 56.26 REMARK 500 6 PRO A 31 -163.20 -77.67 REMARK 500 6 PRO A 42 -71.95 -79.62 REMARK 500 6 SER A 43 95.47 -162.45 REMARK 500 6 ASN A 45 46.16 -76.90 REMARK 500 6 ASN A 74 -56.25 -131.17 REMARK 500 6 VAL A 78 -60.84 -94.29 REMARK 500 7 PRO A 31 -164.05 -78.75 REMARK 500 7 PRO A 42 -71.76 -80.14 REMARK 500 7 LEU A 55 59.14 -93.84 REMARK 500 7 SER A 58 21.19 -144.95 REMARK 500 7 ASN A 74 -45.85 72.78 REMARK 500 7 HIS A 93 -76.67 -87.99 REMARK 500 7 HIS A 94 -34.77 -168.47 REMARK 500 8 SER A 2 -162.40 -171.00 REMARK 500 8 LYS A 18 -78.24 -79.21 REMARK 500 8 ASN A 19 75.83 -110.61 REMARK 500 8 PRO A 31 -179.36 -69.33 REMARK 500 8 LEU A 55 38.82 -87.79 REMARK 500 8 ASN A 74 -44.03 74.16 REMARK 500 8 HIS A 92 33.39 -82.66 REMARK 500 9 PRO A 31 -155.80 -87.05 REMARK 500 9 LEU A 55 45.29 -95.05 REMARK 500 9 ASN A 74 -33.96 73.52 REMARK 500 10 THR A 4 -59.44 -151.81 REMARK 500 10 PRO A 42 -76.70 -79.76 REMARK 500 10 LEU A 55 36.18 -89.96 REMARK 500 10 PRO A 73 25.29 -77.12 REMARK 500 11 ARG A 7 -76.00 -70.69 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KPS RELATED DB: PDB REMARK 900 RELATED ID: DHR29B RELATED DB: TARGETDB REMARK 900 RELATED ID: 16570 RELATED DB: BMRB DBREF 2KPU A 2 88 UNP B8FX10 B8FX10_DESHD 32 118 SEQADV 2KPU SER A 1 UNP B8FX10 EXPRESSION TAG SEQADV 2KPU LEU A 89 UNP B8FX10 EXPRESSION TAG SEQADV 2KPU GLU A 90 UNP B8FX10 EXPRESSION TAG SEQADV 2KPU HIS A 91 UNP B8FX10 EXPRESSION TAG SEQADV 2KPU HIS A 92 UNP B8FX10 EXPRESSION TAG SEQADV 2KPU HIS A 93 UNP B8FX10 EXPRESSION TAG SEQADV 2KPU HIS A 94 UNP B8FX10 EXPRESSION TAG SEQADV 2KPU HIS A 95 UNP B8FX10 EXPRESSION TAG SEQADV 2KPU HIS A 96 UNP B8FX10 EXPRESSION TAG SEQRES 1 A 96 SER SER GLN THR LEU ASP ARG ASP PRO THR LEU THR LEU SEQRES 2 A 96 SER LEU ILE ALA LYS ASN THR PRO ALA ASN SER MET ILE SEQRES 3 A 96 MET THR LYS LEU PRO SER VAL ARG VAL LYS THR GLU GLY SEQRES 4 A 96 TYR ASN PRO SER ILE ASN VAL ASN GLU LEU PHE ALA TYR SEQRES 5 A 96 VAL ASP LEU SER GLY SER GLU PRO GLY GLU HIS ASP TYR SEQRES 6 A 96 GLU VAL LYS VAL GLU PRO ILE PRO ASN ILE LYS ILE VAL SEQRES 7 A 96 GLU ILE SER PRO ARG VAL VAL THR LEU GLN LEU GLU HIS SEQRES 8 A 96 HIS HIS HIS HIS HIS SHEET 1 A 5 LYS A 68 VAL A 69 0 SHEET 2 A 5 ALA A 51 ASP A 54 -1 N TYR A 52 O LYS A 68 SHEET 3 A 5 THR A 10 LYS A 18 1 N ILE A 16 O ALA A 51 SHEET 4 A 5 SER A 32 GLU A 38 -1 O VAL A 33 N LEU A 13 SHEET 5 A 5 LYS A 76 ILE A 77 -1 O LYS A 76 N GLU A 38 SHEET 1 B 3 SER A 24 ILE A 26 0 SHEET 2 B 3 VAL A 84 HIS A 91 -1 O GLU A 90 N MET A 25 SHEET 3 B 3 GLY A 61 GLU A 66 -1 N GLY A 61 O LEU A 89 CISPEP 1 SER A 81 PRO A 82 1 -1.60 CISPEP 2 SER A 81 PRO A 82 2 -0.20 CISPEP 3 SER A 81 PRO A 82 3 -2.85 CISPEP 4 SER A 81 PRO A 82 4 -0.32 CISPEP 5 SER A 81 PRO A 82 5 -0.53 CISPEP 6 SER A 81 PRO A 82 6 -5.01 CISPEP 7 SER A 81 PRO A 82 7 0.77 CISPEP 8 SER A 81 PRO A 82 8 -1.90 CISPEP 9 SER A 81 PRO A 82 9 0.46 CISPEP 10 SER A 81 PRO A 82 10 -5.15 CISPEP 11 SER A 81 PRO A 82 11 -0.72 CISPEP 12 SER A 81 PRO A 82 12 -1.79 CISPEP 13 SER A 81 PRO A 82 13 0.95 CISPEP 14 SER A 81 PRO A 82 14 -0.67 CISPEP 15 SER A 81 PRO A 82 15 -2.98 CISPEP 16 SER A 81 PRO A 82 16 -3.29 CISPEP 17 SER A 81 PRO A 82 17 -2.73 CISPEP 18 SER A 81 PRO A 82 18 -3.80 CISPEP 19 SER A 81 PRO A 82 19 -2.83 CISPEP 20 SER A 81 PRO A 82 20 0.85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1