HEADER TRANSLATION 16-DEC-09 2KRB TITLE SOLUTION STRUCTURE OF EIF3B-RRM BOUND TO EIF3J PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN, UNP RESIDUES 184-264; COMPND 5 SYNONYM: EIF3B, EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 9, COMPND 6 EIF-3-ETA, EIF3 P116, EIF3 P110, PRT1 HOMOLOG, HPRT1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 45-55; COMPND 12 SYNONYM: EIF3J, EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1, COMPND 13 EIF-3-ALPHA, EIF3 P35; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF3B, EIF3S9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: EIF3J, EIF3S1, PRO0391; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS EIF3, TRANSLATION INITIATION, EUKARYOTIC INITIATION FACTOR, EIF3B, KEYWDS 2 EIF3J, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR L.ELANTAK,S.WAGNER,A.HERRMANNOVA,M.JANOSKOVA,E.RUTKAI,P.J.LUKAVSKY, AUTHOR 2 L.VALASEK REVDAT 2 16-MAR-22 2KRB 1 REMARK REVDAT 1 05-JAN-10 2KRB 0 JRNL AUTH L.ELANTAK,S.WAGNER,A.HERRMANNOVA,M.JANOSKOVA,E.RUTKAI, JRNL AUTH 2 P.J.LUKAVSKY,L.VALASEK JRNL TITL THE INDISPENSABLE N-TERMINAL HALF OF EIF3J/HCR1 CO-OPERATES JRNL TITL 2 WITH ITS STRUCTURALLY CONSERVED BINDING PARTNER JRNL TITL 3 EIF3B/PRT1-RRM AND EIF1A IN STRINGENT AUG SELECTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KRB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000101476. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C; U-100% 15N] REMARK 210 EIF3B-RRM, 0.85 MM EIF3J PEPTIDE, REMARK 210 90% H2O/10% D2O; 0.7 MM EIF3B- REMARK 210 RRM, 0.85 MM [U-100% 13C; U-100% REMARK 210 15N] EIF3J PEPTIDE, 90% H2O/10% REMARK 210 D2O; 0.7 MM [U-100% 13C; U-100% REMARK 210 15N] EIF3B-RRM, 0.85 MM EIF3J REMARK 210 PEPTIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D FILTERED/EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AMX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 30 -29.38 -148.25 REMARK 500 1 ASP A 82 88.52 -53.59 REMARK 500 1 LYS A 85 59.64 -98.88 REMARK 500 1 LYS A 88 -76.26 -128.25 REMARK 500 1 GLN A 89 -69.86 -146.14 REMARK 500 1 ASP B 47 73.51 -68.55 REMARK 500 1 ASP B 50 57.34 -68.31 REMARK 500 1 ASN B 51 47.91 -73.29 REMARK 500 1 TRP B 52 27.74 -154.62 REMARK 500 1 ASP B 53 94.52 -168.36 REMARK 500 2 ARG A 30 -29.64 -150.61 REMARK 500 2 ASP A 82 74.50 -61.80 REMARK 500 2 ASP A 87 -66.49 -145.72 REMARK 500 2 LYS A 88 -56.79 -159.27 REMARK 500 2 ASN B 51 6.86 -61.33 REMARK 500 3 ARG A 30 -29.57 -148.31 REMARK 500 3 ASP A 51 116.74 -170.05 REMARK 500 3 ASP A 82 83.21 -56.87 REMARK 500 3 LYS A 85 49.12 -93.26 REMARK 500 3 ASP A 87 91.84 67.56 REMARK 500 3 LYS A 88 -78.37 -149.28 REMARK 500 3 GLN A 89 -69.14 -142.16 REMARK 500 3 ASP B 47 -63.05 -103.58 REMARK 500 3 LYS B 49 159.25 -49.74 REMARK 500 3 ASN B 51 10.77 -64.24 REMARK 500 3 TRP B 52 -50.89 -122.67 REMARK 500 4 ARG A 30 -29.61 -150.66 REMARK 500 4 LYS A 61 -179.11 -62.91 REMARK 500 4 ASP A 82 79.74 -56.54 REMARK 500 4 LYS A 85 51.57 -93.58 REMARK 500 4 LEU A 86 22.26 -72.52 REMARK 500 4 ASP A 87 -88.91 56.37 REMARK 500 4 LYS A 88 -142.90 45.20 REMARK 500 4 ASP B 47 74.72 -64.76 REMARK 500 4 VAL B 48 -49.98 -165.54 REMARK 500 4 LYS B 49 -176.48 -172.95 REMARK 500 4 ASP B 50 42.61 -98.03 REMARK 500 4 ASN B 51 -6.71 -55.30 REMARK 500 4 ASP B 54 33.06 -140.59 REMARK 500 5 ARG A 30 -27.38 -150.36 REMARK 500 5 LYS A 61 174.12 -59.23 REMARK 500 5 ASP A 82 85.61 -57.21 REMARK 500 5 ASP A 87 75.36 60.52 REMARK 500 5 LYS A 88 -64.94 -142.30 REMARK 500 5 GLN A 89 -74.38 -151.68 REMARK 500 5 GLU B 46 53.21 -67.75 REMARK 500 5 LYS B 49 -161.07 61.26 REMARK 500 5 ASN B 51 12.19 -61.05 REMARK 500 6 ARG A 30 -26.55 -151.52 REMARK 500 6 ASP A 82 86.44 -52.33 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 84 0.08 SIDE CHAIN REMARK 500 4 TYR A 84 0.09 SIDE CHAIN REMARK 500 5 TYR A 84 0.09 SIDE CHAIN REMARK 500 6 TYR A 84 0.07 SIDE CHAIN REMARK 500 7 TYR A 84 0.07 SIDE CHAIN REMARK 500 10 TYR A 84 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2KRB A 15 95 UNP P55884 EIF3B_HUMAN 184 264 DBREF 2KRB B 45 55 UNP O75822 EIF3J_HUMAN 45 55 SEQRES 1 A 81 ASP SER VAL ILE VAL VAL ASP ASN VAL PRO GLN VAL GLY SEQRES 2 A 81 PRO ASP ARG LEU GLU LYS LEU LYS ASN VAL ILE HIS LYS SEQRES 3 A 81 ILE PHE SER LYS PHE GLY LYS ILE THR ASN ASP PHE TYR SEQRES 4 A 81 PRO GLU GLU ASP GLY LYS THR LYS GLY TYR ILE PHE LEU SEQRES 5 A 81 GLU TYR ALA SER PRO ALA HIS ALA VAL ASP ALA VAL LYS SEQRES 6 A 81 ASN ALA ASP GLY TYR LYS LEU ASP LYS GLN HIS THR PHE SEQRES 7 A 81 ARG VAL ASN SEQRES 1 B 11 ASP GLU ASP VAL LYS ASP ASN TRP ASP ASP ASP HELIX 1 1 ARG A 30 LYS A 44 1 15 HELIX 2 2 SER A 70 LYS A 79 1 10 SHEET 1 A 3 VAL A 17 ASP A 21 0 SHEET 2 A 3 TYR A 63 TYR A 68 -1 O LEU A 66 N ILE A 18 SHEET 3 A 3 ILE A 48 PHE A 52 -1 N PHE A 52 O PHE A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1