data_2KRL # _entry.id 2KRL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KRL pdb_00002krl 10.2210/pdb2krl/pdb RCSB RCSB101486 ? ? WWPDB D_1000101486 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KRL _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-12-18 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zuo, X.' 1 'Wang, J.' 2 'Yu, P.' 3 'Eyler, D.' 4 'Xu, H.' 5 'Starich, M.' 6 'Tiede, D.' 7 'Simon, A.' 8 'Kasprzak, W.' 9 'Schwieters, C.' 10 'Shapiro, B.' 11 # _citation.id primary _citation.title ;Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 107 _citation.page_first 1385 _citation.page_last 1390 _citation.year 2010 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20080629 _citation.pdbx_database_id_DOI 10.1073/pnas.0908140107 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zuo, X.' 1 ? primary 'Wang, J.' 2 ? primary 'Yu, P.' 3 ? primary 'Eyler, D.' 4 ? primary 'Xu, H.' 5 ? primary 'Starich, M.R.' 6 ? primary 'Tiede, D.M.' 7 ? primary 'Simon, A.E.' 8 ? primary 'Kasprzak, W.' 9 ? primary 'Schwieters, C.D.' 10 ? primary 'Shapiro, B.A.' 11 ? primary 'Wang, Y.X.' 12 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (102-MER)' _entity.formula_weight 32978.570 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGACGGUGGCAGCACUGUCUAGCUGCGGGCAUUAGACUGGAAAACUAGUGCUCUUUGGGUAACCACUAAAAUCCCGAAAG GGUGGGCUGUGGUGACCCUCCG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGACGGUGGCAGCACUGUCUAGCUGCGGGCAUUAGACUGGAAAACUAGUGCUCUUUGGGUAACCACUAAAAUCCCGAAAG GGUGGGCUGUGGUGACCCUCCG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 G n 1 6 G n 1 7 U n 1 8 G n 1 9 G n 1 10 C n 1 11 A n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 U n 1 17 G n 1 18 U n 1 19 C n 1 20 U n 1 21 A n 1 22 G n 1 23 C n 1 24 U n 1 25 G n 1 26 C n 1 27 G n 1 28 G n 1 29 G n 1 30 C n 1 31 A n 1 32 U n 1 33 U n 1 34 A n 1 35 G n 1 36 A n 1 37 C n 1 38 U n 1 39 G n 1 40 G n 1 41 A n 1 42 A n 1 43 A n 1 44 A n 1 45 C n 1 46 U n 1 47 A n 1 48 G n 1 49 U n 1 50 G n 1 51 C n 1 52 U n 1 53 C n 1 54 U n 1 55 U n 1 56 U n 1 57 G n 1 58 G n 1 59 G n 1 60 U n 1 61 A n 1 62 A n 1 63 C n 1 64 C n 1 65 A n 1 66 C n 1 67 U n 1 68 A n 1 69 A n 1 70 A n 1 71 A n 1 72 U n 1 73 C n 1 74 C n 1 75 C n 1 76 G n 1 77 A n 1 78 A n 1 79 A n 1 80 G n 1 81 G n 1 82 G n 1 83 U n 1 84 G n 1 85 G n 1 86 G n 1 87 C n 1 88 U n 1 89 G n 1 90 U n 1 91 G n 1 92 G n 1 93 U n 1 94 G n 1 95 A n 1 96 C n 1 97 C n 1 98 C n 1 99 U n 1 100 C n 1 101 C n 1 102 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Turnip crinkle virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11988 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 U 20 20 20 U U A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 G 25 25 25 G G A . n A 1 26 C 26 26 26 C C A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 C 30 30 30 C C A . n A 1 31 A 31 31 31 A A A . n A 1 32 U 32 32 32 U U A . n A 1 33 U 33 33 33 U U A . n A 1 34 A 34 34 34 A A A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 C 37 37 37 C C A . n A 1 38 U 38 38 38 U U A . n A 1 39 G 39 39 39 G G A . n A 1 40 G 40 40 40 G G A . n A 1 41 A 41 41 41 A A A . n A 1 42 A 42 42 42 A A A . n A 1 43 A 43 43 43 A A A . n A 1 44 A 44 44 44 A A A . n A 1 45 C 45 45 45 C C A . n A 1 46 U 46 46 46 U U A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 G 50 50 50 G G A . n A 1 51 C 51 51 51 C C A . n A 1 52 U 52 52 52 U U A . n A 1 53 C 53 53 53 C C A . n A 1 54 U 54 54 54 U U A . n A 1 55 U 55 55 55 U U A . n A 1 56 U 56 56 56 U U A . n A 1 57 G 57 57 57 G G A . n A 1 58 G 58 58 58 G G A . n A 1 59 G 59 59 59 G G A . n A 1 60 U 60 60 60 U U A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 C 63 63 63 C C A . n A 1 64 C 64 64 64 C C A . n A 1 65 A 65 65 65 A A A . n A 1 66 C 66 66 66 C C A . n A 1 67 U 67 67 67 U U A . n A 1 68 A 68 68 68 A A A . n A 1 69 A 69 69 69 A A A . n A 1 70 A 70 70 70 A A A . n A 1 71 A 71 71 71 A A A . n A 1 72 U 72 72 72 U U A . n A 1 73 C 73 73 73 C C A . n A 1 74 C 74 74 74 C C A . n A 1 75 C 75 75 75 C C A . n A 1 76 G 76 76 76 G G A . n A 1 77 A 77 77 77 A A A . n A 1 78 A 78 78 78 A A A . n A 1 79 A 79 79 79 A A A . n A 1 80 G 80 80 80 G G A . n A 1 81 G 81 81 81 G G A . n A 1 82 G 82 82 82 G G A . n A 1 83 U 83 83 83 U U A . n A 1 84 G 84 84 84 G G A . n A 1 85 G 85 85 85 G G A . n A 1 86 G 86 86 86 G G A . n A 1 87 C 87 87 87 C C A . n A 1 88 U 88 88 88 U U A . n A 1 89 G 89 89 89 G G A . n A 1 90 U 90 90 90 U U A . n A 1 91 G 91 91 91 G G A . n A 1 92 G 92 92 92 G G A . n A 1 93 U 93 93 93 U U A . n A 1 94 G 94 94 94 G G A . n A 1 95 A 95 95 95 A A A . n A 1 96 C 96 96 96 C C A . n A 1 97 C 97 97 97 C C A . n A 1 98 C 98 98 98 C C A . n A 1 99 U 99 99 99 U U A . n A 1 100 C 100 100 100 C C A . n A 1 101 C 101 101 101 C C A . n A 1 102 G 102 102 102 G G A . n # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.crystals_number _exptl.details _exptl.entry_id _exptl.method _exptl.method_details ? ? ? ? ? ? 'The global structure of the TCV RNA was determined using the G2G method.' 2KRL 'SOLUTION NMR' ? ? ? ? ? ? ? ? 2KRL 'SOLUTION SCATTERING' ? # _struct.entry_id 2KRL _struct.title ;The ensemble of the solution global structures of the 102-nt ribosome binding structure element of the turnip crinkle virus 3' UTR RNA ; _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KRL _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;SAXS, 3' UTR, global structure of large RNAs, RNA ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code M22445 _struct_ref.pdbx_db_accession M22445.2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ACGGUGGCAGCACUGUCUAGCUGCGGGCAUUAGACUGGAAAACUAGUGCUCUUUGGGUAACCACUAAAAUCCCGAAAGGG UGGGCUGUGGUGACCUUCCG ; _struct_ref.pdbx_align_begin 3906 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KRL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 102 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession M22445.2 _struct_ref_seq.db_align_beg 3906 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 4005 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 102 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KRL G A 1 ? GB M22445.2 ? ? insertion 1 1 1 2KRL G A 2 ? GB M22445.2 ? ? insertion 2 2 1 2KRL C A 98 ? GB M22445.2 U 4001 conflict 98 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 2 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 2 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 2 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 18 N3 ? ? A A 3 A U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 18 O4 ? ? A A 3 A U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 4 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 4 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 4 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 N1 ? ? ? 1_555 A U 16 O2 ? ? A G 5 A U 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A G 5 O6 ? ? ? 1_555 A U 16 N3 ? ? A G 5 A U 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A G 6 O6 ? ? ? 1_555 A A 14 N6 ? ? A G 6 A A 14 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 6 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 6 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 6 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 14 N1 ? ? A U 7 A A 14 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog16 hydrog ? ? A G 8 N2 ? ? ? 1_555 A G 12 O6 ? ? A G 8 A G 12 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog17 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 13 N3 ? ? A G 8 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 13 O2 ? ? A G 8 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 13 N4 ? ? A G 8 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 12 N7 ? ? A G 9 A G 12 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog21 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 29 N7 ? ? A C 26 A G 29 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog22 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 53 N3 ? ? A G 27 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 53 O2 ? ? A G 27 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 53 N4 ? ? A G 27 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 28 N1 ? ? ? 1_555 A U 52 O2 ? ? A G 28 A U 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 28 O6 ? ? ? 1_555 A U 52 N3 ? ? A G 28 A U 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 29 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 29 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 29 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 29 N2 ? ? ? 1_555 A U 55 O4 ? ? A G 29 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog31 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 30 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 30 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 30 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 31 N1 ? ? ? 1_555 A U 49 N3 ? ? A A 31 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 31 N6 ? ? ? 1_555 A U 49 O4 ? ? A A 31 A U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 32 N3 ? ? ? 1_555 A G 48 O6 ? ? A U 32 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A U 32 O2 ? ? ? 1_555 A G 48 N1 ? ? A U 32 A G 48 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? A U 33 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 33 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 33 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 33 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 34 N1 ? ? ? 1_555 A U 46 N3 ? ? A A 34 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 34 N6 ? ? ? 1_555 A U 46 O4 ? ? A A 34 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 35 A C 45 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog43 hydrog ? ? A C 37 N4 ? ? ? 1_555 A A 44 N1 ? ? A C 37 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog44 hydrog ? ? A U 38 N3 ? ? ? 1_555 A G 102 O6 ? ? A U 38 A G 102 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A U 38 O2 ? ? ? 1_555 A G 102 N1 ? ? A U 38 A G 102 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? A G 39 N1 ? ? ? 1_555 A C 101 N3 ? ? A G 39 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 39 N2 ? ? ? 1_555 A C 101 O2 ? ? A G 39 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 101 N4 ? ? A G 39 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 40 N1 ? ? ? 1_555 A C 100 N3 ? ? A G 40 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 40 N2 ? ? ? 1_555 A C 100 O2 ? ? A G 40 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 40 O6 ? ? ? 1_555 A C 100 N4 ? ? A G 40 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 41 N6 ? ? ? 1_555 A A 43 N7 ? ? A A 41 A A 43 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog53 hydrog ? ? A A 41 N1 ? ? ? 1_555 A U 99 N3 ? ? A A 41 A U 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 41 N6 ? ? ? 1_555 A U 99 O4 ? ? A A 41 A U 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 41 N1 ? ? ? 1_555 A C 100 N4 ? ? A A 41 A C 100 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog56 hydrog ? ? A A 41 N6 ? ? ? 1_555 A C 100 N3 ? ? A A 41 A C 100 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog57 hydrog ? ? A G 59 N1 ? ? ? 1_555 A A 95 N1 ? ? A G 59 A A 95 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog58 hydrog ? ? A G 59 O6 ? ? ? 1_555 A A 95 N6 ? ? A G 59 A A 95 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog59 hydrog ? ? A U 60 N3 ? ? ? 1_555 A A 95 N1 ? ? A U 60 A A 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 60 O4 ? ? ? 1_555 A A 95 N6 ? ? A U 60 A A 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 61 N1 ? ? ? 1_555 A G 94 N1 ? ? A A 61 A G 94 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog62 hydrog ? ? A A 61 N6 ? ? ? 1_555 A G 94 O6 ? ? A A 61 A G 94 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog63 hydrog ? ? A A 62 N1 ? ? ? 1_555 A U 93 N3 ? ? A A 62 A U 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 62 N6 ? ? ? 1_555 A U 93 O4 ? ? A A 62 A U 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 63 N3 ? ? ? 1_555 A G 92 N1 ? ? A C 63 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 63 N4 ? ? ? 1_555 A G 92 O6 ? ? A C 63 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 63 O2 ? ? ? 1_555 A G 92 N2 ? ? A C 63 A G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 64 N3 ? ? ? 1_555 A G 91 N1 ? ? A C 64 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 64 N4 ? ? ? 1_555 A G 91 O6 ? ? A C 64 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 64 O2 ? ? ? 1_555 A G 91 N2 ? ? A C 64 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 65 N1 ? ? ? 1_555 A U 90 N3 ? ? A A 65 A U 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 65 N6 ? ? ? 1_555 A U 90 O4 ? ? A A 65 A U 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 65 N6 ? ? ? 1_555 A G 91 O6 ? ? A A 65 A G 91 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog74 hydrog ? ? A C 66 N3 ? ? ? 1_555 A G 89 N1 ? ? A C 66 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 66 N4 ? ? ? 1_555 A G 89 O6 ? ? A C 66 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 66 O2 ? ? ? 1_555 A G 89 N2 ? ? A C 66 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A U 67 O4 ? ? ? 1_555 A C 87 N4 ? ? A U 67 A C 87 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog78 hydrog ? ? A A 71 N6 ? ? ? 1_555 A G 85 N3 ? ? A A 71 A G 85 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog79 hydrog ? ? A U 72 O4 ? ? ? 1_555 A G 84 N1 ? ? A U 72 A G 84 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog80 hydrog ? ? A C 73 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 73 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 73 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 73 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 73 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 73 N3 ? ? ? 1_555 A U 83 N3 ? ? A C 73 A U 83 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog84 hydrog ? ? A C 73 N4 ? ? ? 1_555 A U 83 O4 ? ? A C 73 A U 83 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog85 hydrog ? ? A C 74 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 74 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 74 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 74 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 74 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 74 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 75 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 75 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 75 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 75 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 75 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 75 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 76 N2 ? ? ? 1_555 A A 78 N7 ? ? A G 76 A A 78 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog92 hydrog ? ? A G 76 N2 ? ? ? 1_555 A A 79 N7 ? ? A G 76 A A 79 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog93 hydrog ? ? A G 76 N1 ? ? ? 1_555 A G 80 O6 ? ? A G 76 A G 80 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H41 A C 37 ? ? H61 A A 44 ? ? 1.28 2 1 H61 A A 70 ? ? OP1 A C 87 ? ? 1.42 3 1 "O2'" A G 39 ? ? H8 A G 40 ? ? 1.45 4 1 "HO2'" A U 38 ? ? OP2 A G 39 ? ? 1.47 5 1 "O2'" A U 67 ? ? "H2'" A A 68 ? ? 1.50 6 1 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.50 7 1 O6 A G 35 ? ? H41 A C 45 ? ? 1.50 8 1 "H2'" A U 99 ? ? "O4'" A C 100 ? ? 1.51 9 1 "H2'" A G 12 ? ? "O4'" A C 13 ? ? 1.52 10 1 "HO2'" A A 70 ? ? "O5'" A A 71 ? ? 1.55 11 1 "HO2'" A C 26 ? ? OP1 A G 27 ? ? 1.59 12 2 "H2'" A G 12 ? ? "O4'" A C 13 ? ? 1.46 13 2 "HO2'" A U 90 ? ? "O4'" A G 91 ? ? 1.48 14 2 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.52 15 2 H21 A G 25 ? ? OP2 A G 28 ? ? 1.57 16 2 "O2'" A U 67 ? ? "H2'" A A 68 ? ? 1.59 17 2 "H2'" A C 13 ? ? "O4'" A A 14 ? ? 1.60 18 2 N3 A C 23 ? ? "O5'" A G 28 ? ? 2.16 19 3 "H2'" A G 12 ? ? "O4'" A C 13 ? ? 1.49 20 3 "O2'" A G 81 ? ? "H5'" A G 82 ? ? 1.52 21 3 "HO2'" A U 90 ? ? "O4'" A G 91 ? ? 1.55 22 3 "O2'" A G 39 ? ? H8 A G 40 ? ? 1.57 23 3 "O2'" A C 53 ? ? "H5''" A U 54 ? ? 1.58 24 3 "HO2'" A A 70 ? ? "O5'" A A 71 ? ? 1.59 25 3 "H4'" A G 81 ? ? OP1 A G 82 ? ? 1.60 26 4 H62 A A 36 ? ? H61 A A 44 ? ? 1.34 27 4 "H2'" A G 12 ? ? "O4'" A C 13 ? ? 1.46 28 4 "O2'" A C 53 ? ? "H5''" A U 54 ? ? 1.49 29 4 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.49 30 4 H21 A G 25 ? ? OP2 A G 28 ? ? 1.52 31 4 "HO2'" A A 70 ? ? "O5'" A A 71 ? ? 1.56 32 4 "H4'" A C 87 ? ? OP1 A U 88 ? ? 1.56 33 4 H61 A A 70 ? ? OP1 A C 87 ? ? 1.57 34 4 "HO2'" A U 90 ? ? "O4'" A G 91 ? ? 1.58 35 4 "O2'" A G 57 ? ? H8 A G 58 ? ? 1.59 36 5 "H2'" A G 12 ? ? "O4'" A C 13 ? ? 1.47 37 5 H21 A G 25 ? ? OP2 A G 28 ? ? 1.47 38 5 "HO2'" A U 90 ? ? "O4'" A G 91 ? ? 1.49 39 5 "O2'" A U 67 ? ? "H5'" A A 68 ? ? 1.50 40 5 "O2'" A A 44 ? ? H6 A C 45 ? ? 1.56 41 5 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.58 42 5 "H4'" A G 81 ? ? OP1 A G 82 ? ? 1.59 43 5 "HO2'" A A 79 ? ? "O4'" A G 80 ? ? 1.59 44 6 "HO2'" A U 56 ? ? OP2 A G 57 ? ? 1.41 45 6 "H2'" A G 12 ? ? "O4'" A C 13 ? ? 1.45 46 6 H61 A A 70 ? ? OP1 A C 87 ? ? 1.45 47 6 "HO2'" A U 90 ? ? "O4'" A G 91 ? ? 1.46 48 6 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.50 49 6 "O2'" A U 67 ? ? "H2'" A A 68 ? ? 1.50 50 6 H21 A G 25 ? ? OP2 A G 28 ? ? 1.54 51 6 "HO2'" A A 70 ? ? "O5'" A A 71 ? ? 1.56 52 6 "HO2'" A U 67 ? ? OP2 A A 68 ? ? 1.56 53 6 "HO2'" A C 37 ? ? OP1 A U 38 ? ? 1.58 54 6 "H4'" A G 81 ? ? OP1 A G 82 ? ? 1.58 55 6 N3 A C 23 ? ? "O5'" A G 28 ? ? 1.93 56 7 "H2'" A G 12 ? ? "O4'" A C 13 ? ? 1.46 57 7 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.47 58 7 "HO2'" A U 90 ? ? "O4'" A G 91 ? ? 1.50 59 7 "H4'" A C 30 ? ? O4 A U 56 ? ? 1.52 60 7 O6 A G 35 ? ? H41 A C 45 ? ? 1.53 61 7 "HO2'" A A 70 ? ? "O5'" A A 71 ? ? 1.57 62 7 H61 A A 70 ? ? OP1 A C 87 ? ? 1.58 63 7 "H2'" A C 13 ? ? "O4'" A A 14 ? ? 1.58 64 7 H61 A A 65 ? ? O6 A G 91 ? ? 1.60 65 7 N3 A C 23 ? ? "O5'" A G 28 ? ? 1.93 66 8 "O2'" A C 53 ? ? "H5''" A U 54 ? ? 1.44 67 8 "H2'" A G 12 ? ? "O4'" A C 13 ? ? 1.47 68 8 "HO2'" A U 90 ? ? "O4'" A G 91 ? ? 1.48 69 8 "O2'" A G 39 ? ? H8 A G 40 ? ? 1.49 70 8 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.54 71 8 "HO2'" A U 38 ? ? OP2 A G 39 ? ? 1.55 72 8 "H2'" A G 48 ? ? "O4'" A U 49 ? ? 1.56 73 8 "O2'" A A 44 ? ? H5 A U 99 ? ? 1.58 74 8 O2 A U 54 ? ? H3 A U 55 ? ? 1.60 75 9 "HO2'" A U 38 ? ? OP2 A G 39 ? ? 1.30 76 9 "HO2'" A U 99 ? ? "HO2'" A C 100 ? ? 1.34 77 9 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.48 78 9 "H2'" A U 99 ? ? "O4'" A C 100 ? ? 1.54 79 9 "HO2'" A G 12 ? ? "O5'" A C 13 ? ? 1.56 80 9 "H1'" A G 8 ? ? "O4'" A G 9 ? ? 1.57 81 9 "H1'" A G 57 ? ? N7 A G 58 ? ? 1.59 82 9 "O2'" A G 12 ? ? "O5'" A C 13 ? ? 1.76 83 10 "O3'" A A 70 ? ? H8 A A 71 ? ? 1.46 84 10 "HO2'" A U 90 ? ? "O4'" A G 91 ? ? 1.55 85 10 O2 A U 38 ? ? H1 A G 102 ? ? 1.60 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 3 C8 A G 81 ? ? N9 A G 81 ? ? 1.325 1.374 -0.049 0.007 N 2 3 C6 A G 82 ? ? N1 A G 82 ? ? 1.336 1.391 -0.055 0.007 N 3 3 N7 A G 82 ? ? C8 A G 82 ? ? 1.253 1.305 -0.052 0.006 N 4 3 P A G 91 ? ? "O5'" A G 91 ? ? 1.660 1.593 0.067 0.010 N 5 5 C2 A G 82 ? ? N2 A G 82 ? ? 1.272 1.341 -0.069 0.010 N 6 6 C5 A G 82 ? ? N7 A G 82 ? ? 1.349 1.388 -0.039 0.006 N 7 6 C2 A G 82 ? ? N2 A G 82 ? ? 1.279 1.341 -0.062 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A A 21 ? ? "O4'" A A 21 ? ? "C4'" A A 21 ? ? 105.33 109.70 -4.37 0.70 N 2 1 "C1'" A C 26 ? ? "O4'" A C 26 ? ? "C4'" A C 26 ? ? 105.38 109.70 -4.32 0.70 N 3 1 N9 A G 27 ? ? C4 A G 27 ? ? C5 A G 27 ? ? 108.06 105.40 2.66 0.40 N 4 1 "C3'" A A 70 ? ? "O3'" A A 70 ? ? P A A 71 ? ? 127.42 119.70 7.72 1.20 Y 5 1 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 107.02 101.50 5.52 0.80 N 6 1 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 127.53 119.70 7.83 1.20 Y 7 2 "C1'" A A 42 ? ? "O4'" A A 42 ? ? "C4'" A A 42 ? ? 105.20 109.70 -4.50 0.70 N 8 2 N9 A G 58 ? ? C4 A G 58 ? ? C5 A G 58 ? ? 107.85 105.40 2.45 0.40 N 9 2 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 106.43 101.50 4.93 0.80 N 10 2 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 127.29 119.70 7.59 1.20 Y 11 2 C8 A G 82 ? ? N9 A G 82 ? ? C4 A G 82 ? ? 103.89 106.40 -2.51 0.40 N 12 2 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 106.93 101.50 5.43 0.80 N 13 3 "C3'" A A 70 ? ? "O3'" A A 70 ? ? P A A 71 ? ? 127.43 119.70 7.73 1.20 Y 14 3 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 126.99 119.70 7.29 1.20 Y 15 3 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 107.24 101.50 5.74 0.80 N 16 4 "C1'" A A 21 ? ? "O4'" A A 21 ? ? "C4'" A A 21 ? ? 105.06 109.70 -4.64 0.70 N 17 4 "C3'" A A 70 ? ? "O3'" A A 70 ? ? P A A 71 ? ? 127.22 119.70 7.52 1.20 Y 18 4 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 107.26 101.50 5.76 0.80 N 19 4 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 127.33 119.70 7.63 1.20 Y 20 4 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 107.33 101.50 5.83 0.80 N 21 5 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 127.08 119.70 7.38 1.20 Y 22 5 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 106.91 101.50 5.41 0.80 N 23 6 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 106.33 101.50 4.83 0.80 N 24 6 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 127.15 119.70 7.45 1.20 Y 25 6 C8 A G 82 ? ? N9 A G 82 ? ? C4 A G 82 ? ? 103.87 106.40 -2.53 0.40 N 26 6 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 106.89 101.50 5.39 0.80 N 27 7 "O4'" A U 38 ? ? "C1'" A U 38 ? ? N1 A U 38 ? ? 99.62 108.20 -8.58 0.80 N 28 7 "C3'" A A 69 ? ? "O3'" A A 69 ? ? P A A 70 ? ? 127.88 119.70 8.18 1.20 Y 29 7 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 107.44 101.50 5.94 0.80 N 30 7 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 106.87 101.50 5.37 0.80 N 31 8 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 108.17 101.50 6.67 0.80 N 32 8 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 127.00 119.70 7.30 1.20 Y 33 8 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 106.58 101.50 5.08 0.80 N 34 9 "C3'" A G 12 ? ? "O3'" A G 12 ? ? P A C 13 ? ? 126.97 119.70 7.27 1.20 Y 35 9 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 106.32 101.50 4.82 0.80 N 36 9 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 127.24 119.70 7.54 1.20 Y 37 9 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 106.93 101.50 5.43 0.80 N 38 10 "O4'" A A 41 ? ? "C1'" A A 41 ? ? N9 A A 41 ? ? 112.72 108.50 4.22 0.70 N 39 10 "C3'" A G 81 ? ? "C2'" A G 81 ? ? "C1'" A G 81 ? ? 106.85 101.50 5.35 0.80 N 40 10 "C3'" A G 81 ? ? "O3'" A G 81 ? ? P A G 82 ? ? 127.46 119.70 7.76 1.20 Y 41 10 "C3'" A U 90 ? ? "C2'" A U 90 ? ? "C1'" A U 90 ? ? 106.98 101.50 5.48 0.80 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 25 ? ? 0.062 'SIDE CHAIN' 2 1 G A 27 ? ? 0.074 'SIDE CHAIN' 3 1 G A 58 ? ? 0.061 'SIDE CHAIN' 4 1 A A 71 ? ? 0.060 'SIDE CHAIN' 5 1 U A 72 ? ? 0.062 'SIDE CHAIN' 6 1 C A 73 ? ? 0.062 'SIDE CHAIN' 7 1 G A 91 ? ? 0.061 'SIDE CHAIN' 8 2 G A 27 ? ? 0.054 'SIDE CHAIN' 9 2 A A 41 ? ? 0.059 'SIDE CHAIN' 10 2 A A 71 ? ? 0.053 'SIDE CHAIN' 11 2 U A 72 ? ? 0.069 'SIDE CHAIN' 12 2 G A 102 ? ? 0.059 'SIDE CHAIN' 13 3 C A 15 ? ? 0.056 'SIDE CHAIN' 14 3 G A 27 ? ? 0.053 'SIDE CHAIN' 15 3 G A 82 ? ? 0.122 'SIDE CHAIN' 16 3 G A 102 ? ? 0.063 'SIDE CHAIN' 17 4 G A 27 ? ? 0.059 'SIDE CHAIN' 18 4 G A 28 ? ? 0.055 'SIDE CHAIN' 19 4 A A 34 ? ? 0.057 'SIDE CHAIN' 20 4 A A 41 ? ? 0.054 'SIDE CHAIN' 21 4 G A 58 ? ? 0.054 'SIDE CHAIN' 22 5 A A 14 ? ? 0.050 'SIDE CHAIN' 23 5 C A 15 ? ? 0.058 'SIDE CHAIN' 24 5 G A 25 ? ? 0.059 'SIDE CHAIN' 25 5 G A 27 ? ? 0.052 'SIDE CHAIN' 26 5 A A 34 ? ? 0.057 'SIDE CHAIN' 27 5 G A 58 ? ? 0.062 'SIDE CHAIN' 28 5 A A 71 ? ? 0.063 'SIDE CHAIN' 29 5 U A 72 ? ? 0.073 'SIDE CHAIN' 30 5 C A 73 ? ? 0.066 'SIDE CHAIN' 31 5 C A 101 ? ? 0.059 'SIDE CHAIN' 32 6 G A 27 ? ? 0.054 'SIDE CHAIN' 33 6 U A 38 ? ? 0.064 'SIDE CHAIN' 34 6 A A 71 ? ? 0.060 'SIDE CHAIN' 35 6 U A 72 ? ? 0.063 'SIDE CHAIN' 36 7 C A 15 ? ? 0.057 'SIDE CHAIN' 37 7 U A 38 ? ? 0.112 'SIDE CHAIN' 38 7 A A 41 ? ? 0.051 'SIDE CHAIN' 39 7 A A 71 ? ? 0.059 'SIDE CHAIN' 40 7 U A 72 ? ? 0.058 'SIDE CHAIN' 41 7 G A 102 ? ? 0.049 'SIDE CHAIN' 42 8 G A 22 ? ? 0.064 'SIDE CHAIN' 43 8 A A 71 ? ? 0.056 'SIDE CHAIN' 44 8 U A 72 ? ? 0.062 'SIDE CHAIN' 45 9 G A 9 ? ? 0.047 'SIDE CHAIN' 46 9 G A 27 ? ? 0.051 'SIDE CHAIN' 47 9 A A 34 ? ? 0.054 'SIDE CHAIN' 48 9 G A 40 ? ? 0.050 'SIDE CHAIN' 49 9 G A 59 ? ? 0.082 'SIDE CHAIN' 50 9 U A 72 ? ? 0.058 'SIDE CHAIN' 51 9 C A 100 ? ? 0.057 'SIDE CHAIN' 52 9 G A 102 ? ? 0.059 'SIDE CHAIN' 53 10 G A 12 ? ? 0.069 'SIDE CHAIN' 54 10 G A 25 ? ? 0.057 'SIDE CHAIN' 55 10 C A 45 ? ? 0.063 'SIDE CHAIN' 56 10 G A 59 ? ? 0.098 'SIDE CHAIN' 57 10 A A 71 ? ? 0.054 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KRL _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KRL _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.06 mM RNA-1, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.3-0.8 mM [U-98% 15N] RNA-2, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '0.3-0.8 mM RNA-3, 90% H2O/10% D2O' 3 '90% H2O/10% D2O' '0.5 mM [U-98% 15N] RNA-4, 90% H2O/10% D2O' 4 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id RNA-1 0.06 ? mM ? 1 RNA-2 ? 0.3-0.8 mM '[U-98% 15N]' 2 RNA-3 ? 0.3-0.8 mM ? 3 RNA-4 0.5 ? mM '[U-98% 15N]' 4 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 3 '2D 1H-1H NOESY' 1 2 2 '2D HNN-COSY' 2 3 4 IPAP-HSQC # _pdbx_nmr_details.entry_id 2KRL _pdbx_nmr_details.text 'MORE DETAILS ON STRUTURE DETERMINATION IN REMARK 265' # _pdbx_nmr_refine.entry_id 2KRL _pdbx_nmr_refine.method 'simulated annealing, duplex-orientation restrained' _pdbx_nmr_refine.details 'the orientations of all duplexes were restrained during the SA calculation' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal '(G2G) J. Wang, X. Zuo and Y-X. Wang' 'generate global structure of rnas' G2G 1.0 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.22 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KRL 'double helix' 2KRL 'a-form double helix' 2KRL 'b-form double helix' 2KRL 'bulge loop' 2KRL 'mismatched base pair' 2KRL 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 19 1_555 -0.117 -0.211 -1.459 -21.372 22.654 -4.094 1 A_G2:C19_A A 2 ? A 19 ? 19 1 1 A A 3 1_555 A U 18 1_555 0.169 0.129 -0.011 2.713 -9.013 -1.321 2 A_A3:U18_A A 3 ? A 18 ? 20 1 1 A C 4 1_555 A G 17 1_555 0.599 -0.300 -0.631 17.237 -7.554 -3.546 3 A_C4:G17_A A 4 ? A 17 ? 19 1 1 A G 5 1_555 A U 16 1_555 -3.458 -1.365 -0.095 3.244 -35.296 12.199 4 A_G5:U16_A A 5 ? A 16 ? 28 1 1 A G 6 1_555 A C 15 1_555 -0.296 -0.148 -0.166 -23.280 -40.264 12.796 5 A_G6:C15_A A 6 ? A 15 ? 19 1 1 A U 7 1_555 A A 14 1_555 0.858 0.661 0.453 -5.903 -29.048 26.132 6 A_U7:A14_A A 7 ? A 14 ? ? 1 1 A G 8 1_555 A C 13 1_555 0.987 -0.010 0.629 -2.914 -13.321 -4.934 7 A_G8:C13_A A 8 ? A 13 ? 19 1 1 A G 9 1_555 A G 12 1_555 6.980 -4.350 0.101 -2.387 -41.976 -5.563 8 A_G9:G12_A A 9 ? A 12 ? ? 10 1 A G 27 1_555 A C 53 1_555 -0.957 -0.251 -0.782 -29.330 4.336 -0.567 9 A_G27:C53_A A 27 ? A 53 ? 19 1 1 A G 28 1_555 A U 52 1_555 -2.823 -0.450 -0.789 -14.801 11.862 4.594 10 A_G28:U52_A A 28 ? A 52 ? 28 1 1 A G 29 1_555 A C 51 1_555 0.464 0.075 -0.389 -8.786 -4.239 8.265 11 A_G29:C51_A A 29 ? A 51 ? 19 1 1 A C 30 1_555 A G 50 1_555 0.828 -0.358 0.115 -6.192 4.300 -2.538 12 A_C30:G50_A A 30 ? A 50 ? 19 1 1 A A 31 1_555 A U 49 1_555 -0.350 -0.313 -0.965 -22.354 -5.471 -7.051 13 A_A31:U49_A A 31 ? A 49 ? 20 1 1 A U 32 1_555 A G 48 1_555 2.147 -0.770 -0.751 -5.387 -17.281 0.074 14 A_U32:G48_A A 32 ? A 48 ? 28 1 1 A U 33 1_555 A A 47 1_555 -0.069 -0.239 -0.452 -11.829 -28.946 2.858 15 A_U33:A47_A A 33 ? A 47 ? 20 1 1 A A 34 1_555 A U 46 1_555 -0.306 -0.250 0.087 -11.992 -21.191 -5.116 16 A_A34:U46_A A 34 ? A 46 ? 20 1 1 A G 35 1_555 A C 45 1_555 0.521 -0.013 -0.866 -29.473 -41.239 -18.370 17 A_G35:C45_A A 35 ? A 45 ? ? 1 1 A C 37 1_555 A A 44 1_555 -0.084 -4.235 0.371 -4.846 -36.274 131.721 18 A_C37:A44_A A 37 ? A 44 ? ? ? 1 A A 41 1_555 A U 99 1_555 0.399 0.058 -0.012 8.718 3.683 9.490 19 A_A41:U99_A A 41 ? A 99 ? 20 1 1 A G 40 1_555 A C 100 1_555 0.716 0.085 -0.875 -33.120 5.857 -1.556 20 A_G40:C100_A A 40 ? A 100 ? 19 1 1 A U 38 1_555 A G 102 1_555 2.279 -0.285 -0.485 -21.694 -29.732 34.216 21 A_U38:G102_A A 38 ? A 102 ? 28 1 1 A G 39 1_555 A C 101 1_555 -0.449 -2.301 -2.449 -11.959 3.807 -7.431 22 A_G39:C101_A A 39 ? A 101 ? 19 1 1 A U 60 1_555 A A 95 1_555 -0.396 0.003 0.259 -16.370 8.580 5.816 23 A_U60:A95_A A 60 ? A 95 ? 20 1 1 A A 61 1_555 A G 94 1_555 -1.321 0.306 -2.106 -16.130 -2.412 6.385 24 A_A61:G94_A A 61 ? A 94 ? 8 1 1 A A 62 1_555 A U 93 1_555 -0.188 -0.233 -0.725 -26.331 26.251 -22.871 25 A_A62:U93_A A 62 ? A 93 ? 20 1 1 A C 63 1_555 A G 92 1_555 -0.556 -0.141 -1.049 19.150 15.752 -4.195 26 A_C63:G92_A A 63 ? A 92 ? 19 1 1 A C 64 1_555 A G 91 1_555 -0.075 -0.205 -0.615 14.255 30.823 -9.746 27 A_C64:G91_A A 64 ? A 91 ? 19 1 1 A A 65 1_555 A U 90 1_555 0.560 -0.097 -1.338 -18.456 -12.247 -3.162 28 A_A65:U90_A A 65 ? A 90 ? 20 1 1 A C 66 1_555 A G 89 1_555 0.100 -0.086 -1.156 34.381 7.287 -2.373 29 A_C66:G89_A A 66 ? A 89 ? 19 1 1 A U 67 1_555 A C 87 1_555 -0.202 -0.884 0.516 -3.857 14.140 3.098 30 A_U67:C87_A A 67 ? A 87 ? ? ? 1 A A 71 1_555 A G 85 1_555 -4.886 -3.471 2.464 1.535 51.751 -1.410 31 A_A71:G85_A A 71 ? A 85 ? ? ? 1 A U 72 1_555 A G 84 1_555 -3.158 -0.488 1.671 3.816 8.826 7.782 32 A_U72:G84_A A 72 ? A 84 ? ? 1 1 A C 73 1_555 A U 83 1_555 -0.633 -1.486 0.716 9.006 14.323 -8.165 33 A_C73:U83_A A 73 ? A 83 ? 18 1 1 A C 74 1_555 A G 82 1_555 1.076 -1.272 1.337 38.478 5.509 27.532 34 A_C74:G82_A A 74 ? A 82 ? 19 1 1 A C 75 1_555 A G 80 1_555 -0.957 -1.331 -1.714 -9.046 2.000 -1.830 35 A_C75:G80_A A 75 ? A 80 ? 19 1 1 A G 76 1_555 A A 79 1_555 6.327 -5.090 1.496 0.013 18.912 -40.563 36 A_G76:A79_A A 76 ? A 79 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 19 1_555 A A 3 1_555 A U 18 1_555 -0.607 -1.792 3.388 -3.300 -21.354 28.268 0.938 0.398 3.831 -37.561 5.805 35.446 1 AA_G2A3:U18C19_AA A 2 ? A 19 ? A 3 ? A 18 ? 1 A A 3 1_555 A U 18 1_555 A C 4 1_555 A G 17 1_555 -0.495 -1.317 2.721 5.046 4.320 31.586 -2.979 1.603 2.418 7.827 -9.144 32.260 2 AA_A3C4:G17U18_AA A 3 ? A 18 ? A 4 ? A 17 ? 1 A C 4 1_555 A G 17 1_555 A G 5 1_555 A U 16 1_555 0.149 -1.961 2.812 -8.374 23.846 13.406 -6.800 -1.294 -0.343 58.968 20.707 28.558 3 AA_C4G5:U16G17_AA A 4 ? A 17 ? A 5 ? A 16 ? 1 A G 5 1_555 A U 16 1_555 A G 6 1_555 A C 15 1_555 0.158 0.123 3.634 -5.567 13.519 47.235 -0.980 -0.654 3.505 16.418 6.761 49.321 4 AA_G5G6:C15U16_AA A 5 ? A 16 ? A 6 ? A 15 ? 1 A G 6 1_555 A C 15 1_555 A U 7 1_555 A A 14 1_555 0.887 -0.703 2.190 2.634 0.993 41.919 -1.050 -1.052 2.223 1.386 -3.676 42.009 5 AA_G6U7:A14C15_AA A 6 ? A 15 ? A 7 ? A 14 ? 1 A U 7 1_555 A A 14 1_555 A G 8 1_555 A C 13 1_555 -2.131 -0.820 2.831 -6.303 -3.937 32.671 -0.813 2.722 3.248 -6.888 11.027 33.483 6 AA_U7G8:C13A14_AA A 7 ? A 14 ? A 8 ? A 13 ? 1 A G 8 1_555 A C 13 1_555 A G 9 1_555 A G 12 1_555 -1.159 -0.019 3.323 5.100 -7.759 58.416 0.379 1.437 3.200 -7.895 -5.189 59.085 7 AA_G8G9:G12C13_AA A 8 ? A 13 ? A 9 ? A 12 ? 1 A G 27 1_555 A C 53 1_555 A G 28 1_555 A U 52 1_555 1.344 -2.921 3.203 7.227 -8.562 26.680 -3.629 -0.815 4.142 -17.599 -14.855 28.898 8 AA_G27G28:U52C53_AA A 27 ? A 53 ? A 28 ? A 52 ? 1 A G 28 1_555 A U 52 1_555 A G 29 1_555 A C 51 1_555 -0.658 -1.469 3.499 6.591 -4.759 32.420 -1.702 2.328 3.477 -8.361 -11.579 33.397 9 AA_G28G29:C51U52_AA A 28 ? A 52 ? A 29 ? A 51 ? 1 A G 29 1_555 A C 51 1_555 A C 30 1_555 A G 50 1_555 -0.186 -1.814 4.049 -3.326 -12.954 28.114 0.005 -0.524 4.432 -24.958 6.407 31.075 10 AA_G29C30:G50C51_AA A 29 ? A 51 ? A 30 ? A 50 ? 1 A C 30 1_555 A G 50 1_555 A A 31 1_555 A U 49 1_555 1.181 -1.718 3.506 17.510 3.448 41.069 -2.620 0.259 3.556 4.658 -23.659 44.625 11 AA_C30A31:U49G50_AA A 30 ? A 50 ? A 31 ? A 49 ? 1 A A 31 1_555 A U 49 1_555 A U 32 1_555 A G 48 1_555 -0.815 -0.948 2.663 5.080 -2.459 35.525 -1.252 1.905 2.584 -4.000 -8.262 35.956 12 AA_A31U32:G48U49_AA A 31 ? A 49 ? A 32 ? A 48 ? 1 A U 32 1_555 A G 48 1_555 A U 33 1_555 A A 47 1_555 -0.488 -0.740 3.221 3.577 16.496 26.499 -4.227 1.523 2.296 32.171 -6.977 31.336 13 AA_U32U33:A47G48_AA A 32 ? A 48 ? A 33 ? A 47 ? 1 A U 33 1_555 A A 47 1_555 A A 34 1_555 A U 46 1_555 -0.294 -0.630 3.172 -5.838 17.497 33.013 -3.102 -0.255 2.550 28.217 9.414 37.691 14 AA_U33A34:U46A47_AA A 33 ? A 47 ? A 34 ? A 46 ? 1 A A 34 1_555 A U 46 1_555 A G 35 1_555 A C 45 1_555 -0.859 -0.586 3.706 4.863 15.409 44.283 -2.128 1.516 3.236 19.681 -6.211 46.999 15 AA_A34G35:C45U46_AA A 34 ? A 46 ? A 35 ? A 45 ? 1 A G 35 1_555 A C 45 1_555 A C 37 1_555 A A 44 1_555 -1.663 -4.001 1.255 -159.842 -5.238 9.571 -1.984 -0.623 1.893 -2.920 89.106 159.998 16 AA_G35C37:A44C45_AA A 35 ? A 45 ? A 37 ? A 44 ? 1 A C 37 1_555 A A 44 1_555 A A 41 1_555 A U 99 1_555 -1.894 4.829 -2.711 -97.042 16.240 -141.921 -2.406 -0.580 -3.296 -8.382 -50.086 -155.383 17 AA_C37A41:U99A44_AA A 37 ? A 44 ? A 41 ? A 99 ? 1 A A 41 1_555 A U 99 1_555 A G 40 1_555 A C 100 1_555 0.508 2.197 -2.209 -0.773 8.266 -13.580 -2.689 2.327 -2.999 -31.407 -2.938 -15.907 18 AA_A41G40:C100U99_AA A 41 ? A 99 ? A 40 ? A 100 ? 1 A U 38 1_555 A G 102 1_555 A G 39 1_555 A C 101 1_555 -1.666 0.562 3.988 10.285 15.739 16.164 -4.273 7.535 2.284 41.574 -27.166 24.747 19 AA_U38G39:C101G102_AA A 38 ? A 102 ? A 39 ? A 101 ? 1 A U 60 1_555 A A 95 1_555 A A 61 1_555 A G 94 1_555 0.323 -0.817 3.801 13.388 13.039 24.878 -4.380 2.326 2.861 26.079 -26.775 31.027 20 AA_U60A61:G94A95_AA A 60 ? A 95 ? A 61 ? A 94 ? 1 A A 61 1_555 A G 94 1_555 A A 62 1_555 A U 93 1_555 -1.677 0.023 4.637 -14.257 25.471 30.453 -4.081 0.040 3.973 39.051 21.859 41.943 21 AA_A61A62:U93G94_AA A 61 ? A 94 ? A 62 ? A 93 ? 1 A A 62 1_555 A U 93 1_555 A C 63 1_555 A G 92 1_555 1.209 -0.807 2.567 -1.988 -6.792 26.347 -0.350 -2.963 2.593 -14.570 4.264 27.265 22 AA_A62C63:G92U93_AA A 62 ? A 93 ? A 63 ? A 92 ? 1 A C 63 1_555 A G 92 1_555 A C 64 1_555 A G 91 1_555 -0.070 -1.182 4.464 -3.895 7.701 43.852 -2.499 -0.385 4.200 10.194 5.156 44.652 23 AA_C63C64:G91G92_AA A 63 ? A 92 ? A 64 ? A 91 ? 1 A C 64 1_555 A G 91 1_555 A A 65 1_555 A U 90 1_555 1.348 -0.118 3.619 27.434 49.661 42.642 -2.393 0.088 2.721 49.058 -27.101 69.891 24 AA_C64A65:U90G91_AA A 64 ? A 91 ? A 65 ? A 90 ? 1 A A 65 1_555 A U 90 1_555 A C 66 1_555 A G 89 1_555 0.232 -0.155 1.968 -2.111 3.593 27.197 -0.852 -0.798 1.909 7.584 4.457 27.508 25 AA_A65C66:G89U90_AA A 65 ? A 90 ? A 66 ? A 89 ? 1 A A 71 1_555 A G 85 1_555 A U 72 1_555 A G 84 1_555 -0.166 -1.231 4.024 11.033 16.560 27.286 -5.183 2.323 2.631 30.490 -20.314 33.659 26 AA_A71U72:G84G85_AA A 71 ? A 85 ? A 72 ? A 84 ? 1 A U 72 1_555 A G 84 1_555 A C 73 1_555 A U 83 1_555 -2.206 -0.414 3.625 -4.048 -4.903 31.127 0.287 3.170 3.892 -9.018 7.447 31.754 27 AA_U72C73:U83G84_AA A 72 ? A 84 ? A 73 ? A 83 ? 1 A C 73 1_555 A U 83 1_555 A C 74 1_555 A G 82 1_555 1.532 -0.301 2.730 -7.950 7.738 40.114 -1.068 -2.821 2.304 11.027 11.331 41.559 28 AA_C73C74:G82U83_AA A 73 ? A 83 ? A 74 ? A 82 ? 1 A C 74 1_555 A G 82 1_555 A C 75 1_555 A G 80 1_555 -0.755 -1.258 6.952 1.862 14.353 45.476 -3.947 1.245 6.271 18.035 -2.340 47.607 29 AA_C74C75:G80G82_AA A 74 ? A 82 ? A 75 ? A 80 ? 1 A C 75 1_555 A G 80 1_555 A G 76 1_555 A A 79 1_555 -2.037 0.048 3.715 -3.811 40.687 58.057 -1.708 1.612 3.271 37.352 3.499 69.958 30 AA_C75G76:A79G80_AA A 75 ? A 80 ? A 76 ? A 79 ? # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_soln_scatter.id 1 _pdbx_soln_scatter.type x-ray _pdbx_soln_scatter.source_type 'APS ARGONNE' _pdbx_soln_scatter.source_class Y _pdbx_soln_scatter.source_beamline 12-ID,18-ID _pdbx_soln_scatter.source_beamline_instrument ? _pdbx_soln_scatter.detector_type 'MARCCD 165' _pdbx_soln_scatter.detector_specific 'MARRESEARCH GMBH, GERMANY' _pdbx_soln_scatter.temperature 298 _pdbx_soln_scatter.sample_pH 6.8 _pdbx_soln_scatter.num_time_frames 20 _pdbx_soln_scatter.concentration_range 1.0-5.0 _pdbx_soln_scatter.buffer_name '50 MM TRIS, 0.5 MM MgCl2' _pdbx_soln_scatter.data_reduction_software_list 'MARDETECTOR, HOME-WRITTEN PROGRAM' _pdbx_soln_scatter.data_analysis_software_list 'GNOM, HOME-WRITTEN SCRIPTS IN IGOR AND MATLAB' _pdbx_soln_scatter.mean_guiner_radius 30.9 _pdbx_soln_scatter.mean_guiner_radius_esd 0.4 _pdbx_soln_scatter.min_mean_cross_sectional_radii_gyration ? _pdbx_soln_scatter.min_mean_cross_sectional_radii_gyration_esd ? _pdbx_soln_scatter.max_mean_cross_sectional_radii_gyration ? _pdbx_soln_scatter.max_mean_cross_sectional_radii_gyration_esd ? _pdbx_soln_scatter.protein_length 110 _pdbx_soln_scatter.entry_id 2KRL # _pdbx_soln_scatter_model.scatter_id 1 _pdbx_soln_scatter_model.id 1 _pdbx_soln_scatter_model.method ;SIMULATED ANNEALING METHOD WITH RESTRAINTS OF X-RAY SCATTERING DATA, RDC DATA, GENERIC A-FORM GEOMETRIC DISTANCE IN DUPLEXES, GENERIC A-FORM LIKE STACKING, NMR DETECTED HYDROGEN BONDS, AND SAXS MOLECULAR ENVELOPE DIMENISIONAL MEASUREMENTS. ; _pdbx_soln_scatter_model.software_list 'G2G, DAMMIN AND DAMAVER IN ATSAS 2.1, XPLOR-NIH' _pdbx_soln_scatter_model.software_author_list ? _pdbx_soln_scatter_model.entry_fitting_list 'G2G INITIAL STRUCTURE' _pdbx_soln_scatter_model.details ;SAXS MOLECULAR ENVELOPE WAS GENERATED USING AB INITIO MODEL CONSTRUCTION FROM SAXS BY DAMMIN AND DAMAVER. G2G WAS USED TO GENERATE INITIAL STRUCTURE. REFERENCE OF G2G IS : X. Zuo, J. Wang, P. Yu, D. Eyler, H. Xu, M.R. Starich, D.M. Tiede, A.E. Simon, W. Kasprzak, C.D. Schwieters, B.A. Shapiro, Y.-X. WANG, A Method for Helical RNA Global Structure Determination in Solution Using Small-Angle X-Ray Scattering and NMR Measurements; JOURNAL OF MOLECULAR BIOLOGY 2009, 393(3), 717-734. ; _pdbx_soln_scatter_model.num_conformers_calculated 100 _pdbx_soln_scatter_model.num_conformers_submitted 10 _pdbx_soln_scatter_model.conformer_selection_criteria ;STRUCTURES WITH LOWEST TOTAL ENERGY. THE TOTAL ENERGY INCLUDES PSEUDO-POTENTIALS OF SCATTERING TERM, RDC TERM, HYDROGEN BONDING TERM, AND OTHER REGULAR PSEUDO-POTENTIALS IMPLEMENTED IN XPLOR-NIH. ; _pdbx_soln_scatter_model.representative_conformer 1 # _atom_sites.entry_id 2KRL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_