HEADER SIGNALING PROTEIN 21-DEC-09 2KRN TITLE HIGH RESOLUTION STRUCTURE OF THE SECOND SH3 DOMAIN OF CD2AP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD2-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3-B DOMAIN, UNP RESIDUES 111-166; COMPND 5 SYNONYM: MESENCHYME-TO-EPITHELIUM TRANSITION PROTEIN WITH SH3 DOMAINS COMPND 6 1, METS-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CD2AP, METS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGAT-2 KEYWDS PROTEIN, SH3 DOMAIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.ORTEGA ROLDAN,A.I.AZUAGA,N.A.J.VAN NULAND REVDAT 1 12-JAN-11 2KRN 0 JRNL AUTH J.L.ORTEGA ROLDAN,M.BLACKLEDGE,N.A.J.VAN NULAND,A.I.AZUAGA JRNL TITL SOLUTION STRUCTURE, DYNAMICS AND THERMODYNAMICS OF THE THREE JRNL TITL 2 SH3 DOMAINS OF CD2AP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : RECOORD REMARK 3 AUTHORS : NEDERVEEN ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KRN COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-09. REMARK 100 THE RCSB ID CODE IS RCSB101488. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM SH3-B, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : RECOORD, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 13 OE1 GLU A 20 1.63 REMARK 500 H3 GLY A 1 OE1 GLU A 33 1.65 REMARK 500 HG SER A 2 OE2 GLU A 33 1.66 REMARK 500 H GLN A 16 OE1 GLU A 20 1.67 REMARK 500 HD21 ASN A 17 OE2 GLU A 20 1.70 REMARK 500 HE ARG A 5 OXT GLU A 60 1.71 REMARK 500 H ARG A 5 OE2 GLU A 58 1.73 REMARK 500 H LEU A 21 O LEU A 50 1.76 REMARK 500 O ASN A 54 HZ1 LYS A 57 1.76 REMARK 500 OD1 ASP A 27 H VAL A 28 1.77 REMARK 500 HG1 THR A 43 O LYS A 47 1.80 REMARK 500 HE21 GLN A 6 OD1 ASP A 30 1.80 REMARK 500 H TRP A 40 O PHE A 51 1.81 REMARK 500 O GLY A 38 H SER A 53 1.81 REMARK 500 O CYS A 7 H ILE A 29 1.81 REMARK 500 H VAL A 9 O ASP A 27 1.84 REMARK 500 H ILE A 32 O SER A 41 1.84 REMARK 500 O ASP A 19 H LEU A 50 1.87 REMARK 500 H LEU A 44 O LYS A 47 1.96 REMARK 500 O VAL A 9 H GLY A 26 1.97 REMARK 500 HH21 ARG A 5 OXT GLU A 60 1.98 REMARK 500 HZ3 LYS A 8 O GLY A 26 1.98 REMARK 500 HE21 GLN A 16 OE2 GLU A 20 2.01 REMARK 500 H LEU A 10 O PHE A 55 2.01 REMARK 500 O GLU A 36 H TRP A 39 2.02 REMARK 500 O GLY A 42 H GLY A 49 2.04 REMARK 500 O GLY A 38 HA PRO A 52 2.06 REMARK 500 O TRP A 40 H PHE A 51 2.06 REMARK 500 O LEU A 44 H ASN A 46 2.10 REMARK 500 O PRO A 52 H ASN A 54 2.10 REMARK 500 H GLU A 36 O TRP A 39 2.11 REMARK 500 HB2 PRO A 15 O ASN A 17 2.14 REMARK 500 O GLU A 37 HG SER A 53 2.14 REMARK 500 H SER A 2 OE1 GLU A 33 2.14 REMARK 500 HA GLU A 20 O LEU A 50 2.15 REMARK 500 O GLU A 36 H GLY A 38 2.15 REMARK 500 C PRO A 52 H ASN A 54 2.17 REMARK 500 O ASP A 30 H THR A 43 2.17 REMARK 500 HH22 ARG A 5 OE2 GLU A 60 2.18 REMARK 500 H PHE A 11 O PHE A 55 2.18 REMARK 500 O LEU A 44 H LYS A 47 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 37 -78.97 52.33 REMARK 500 1 ASN A 45 -78.93 68.39 REMARK 500 1 SER A 53 21.60 -72.81 REMARK 500 2 ASN A 45 22.81 -176.11 REMARK 500 2 ASN A 46 -67.73 -172.11 REMARK 500 2 LEU A 59 -173.15 62.00 REMARK 500 3 SER A 14 100.69 64.00 REMARK 500 3 ASN A 45 -72.12 -119.05 REMARK 500 4 LEU A 44 -74.74 -90.85 REMARK 500 4 ASN A 46 -42.60 -165.90 REMARK 500 5 ASN A 17 -168.50 -125.34 REMARK 500 5 GLU A 33 -176.32 -172.83 REMARK 500 5 GLU A 37 94.23 -69.86 REMARK 500 5 ASN A 45 -68.61 -164.27 REMARK 500 5 LYS A 57 -107.64 -100.75 REMARK 500 5 GLU A 58 145.85 -171.03 REMARK 500 6 ARG A 5 168.98 73.73 REMARK 500 6 GLU A 33 147.14 -170.69 REMARK 500 6 ASN A 45 -72.82 -104.05 REMARK 500 6 GLU A 58 174.02 67.74 REMARK 500 7 MET A 3 -74.45 69.64 REMARK 500 7 SER A 14 101.95 67.44 REMARK 500 7 LEU A 44 -68.24 -90.38 REMARK 500 7 ASN A 46 -37.13 -133.05 REMARK 500 7 SER A 53 21.09 -75.52 REMARK 500 8 SER A 14 105.40 71.40 REMARK 500 8 ASN A 17 -80.37 -112.13 REMARK 500 8 GLU A 18 -24.96 167.60 REMARK 500 8 LEU A 44 -60.53 -134.56 REMARK 500 9 PRO A 15 154.67 -48.33 REMARK 500 9 ILE A 32 -61.35 -98.59 REMARK 500 9 ASN A 45 -65.72 -140.22 REMARK 500 9 SER A 53 42.58 -80.44 REMARK 500 10 SER A 14 88.35 58.67 REMARK 500 10 ASN A 45 -59.99 -132.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FEI RELATED DB: PDB REMARK 900 SH3-B OF CMS REMARK 900 RELATED ID: 2JTE RELATED DB: PDB REMARK 900 SH3-C OF CD2AP REMARK 900 RELATED ID: 2O2O RELATED DB: PDB REMARK 900 SH3-B OF CIN85 REMARK 900 RELATED ID: 3KRM RELATED DB: PDB REMARK 900 RDC REFINED SOLUTION STRUCTURE OF THE FIRST SH3 DOMAIN OF REMARK 900 CD2AP REMARK 900 RELATED ID: 3KRO RELATED DB: PDB REMARK 900 RDC REFINED HIGH RESOLUTION STRUCTURE OF THE THIRD SH3 REMARK 900 DOMAIN OF CD2AP DBREF 2KRN A 5 60 UNP Q9JLQ0 CD2AP_MOUSE 111 166 SEQADV 2KRN GLY A 1 UNP Q9JLQ0 EXPRESSION TAG SEQADV 2KRN SER A 2 UNP Q9JLQ0 EXPRESSION TAG SEQADV 2KRN MET A 3 UNP Q9JLQ0 EXPRESSION TAG SEQADV 2KRN GLY A 4 UNP Q9JLQ0 EXPRESSION TAG SEQRES 1 A 60 GLY SER MET GLY ARG GLN CYS LYS VAL LEU PHE ASP TYR SEQRES 2 A 60 SER PRO GLN ASN GLU ASP GLU LEU GLU LEU ILE VAL GLY SEQRES 3 A 60 ASP VAL ILE ASP VAL ILE GLU GLU VAL GLU GLU GLY TRP SEQRES 4 A 60 TRP SER GLY THR LEU ASN ASN LYS LEU GLY LEU PHE PRO SEQRES 5 A 60 SER ASN PHE VAL LYS GLU LEU GLU SHEET 1 A 5 LYS A 47 PRO A 52 0 SHEET 2 A 5 TRP A 39 LEU A 44 -1 N TRP A 40 O PHE A 51 SHEET 3 A 5 VAL A 28 GLU A 36 -1 N ILE A 32 O SER A 41 SHEET 4 A 5 CYS A 7 VAL A 9 -1 N CYS A 7 O ILE A 29 SHEET 5 A 5 VAL A 56 LYS A 57 -1 O LYS A 57 N LYS A 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1