HEADER NUCLEAR PROTEIN 22-DEC-09 2KRR TITLE SOLUTION STRUCTURE OF THE RBD1,2 DOMAINS FROM HUMAN NUCLEOLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA BINDING DOMAINS 1, 2; COMPND 5 SYNONYM: PROTEIN C23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS ACETYLATION, CYTOPLASM, DNA-BINDING, METHYLATION, NUCLEUS, KEYWDS 2 PHOSPHOPROTEIN, POLYMORPHISM, RNA-BINDING, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.ARUMUGAM,C.MILLER,J.MALIEKAL,P.J.BATES,J.O.TRENT,A.N.LANE REVDAT 3 14-JUN-23 2KRR 1 REMARK REVDAT 2 26-FEB-20 2KRR 1 REMARK SEQADV REVDAT 1 05-MAY-10 2KRR 0 JRNL AUTH S.ARUMUGAM,M.C.MILLER,J.MALIEKAL,P.J.BATES,J.O.TRENT, JRNL AUTH 2 A.N.LANE JRNL TITL SOLUTION STRUCTURE OF THE RBD1,2 DOMAINS FROM HUMAN JRNL TITL 2 NUCLEOLIN. JRNL REF J.BIOMOL.NMR V. 47 79 2010 JRNL REFN ISSN 0925-2738 JRNL PMID 20376532 JRNL DOI 10.1007/S10858-010-9412-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000101492. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 123 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-13C; U-15N] RBD1,2-1, REMARK 210 100 MM POTASSIUM CHLORIDE-2, 20 REMARK 210 MM [U-2H] SODIUM ACETATE-3, 3 MM REMARK 210 SODIUM AZIDE-4, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-15N] RBD1,2-5, 100 MM REMARK 210 POTASSIUM CHLORIDE-6, 20 MM [U- REMARK 210 2H] SODIUM ACETATE-7, 3 MM REMARK 210 SODIUM AZIDE-8, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HCCH-COSY; 3D HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE, SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 51.70 36.55 REMARK 500 1 GLU A 3 -61.68 -176.90 REMARK 500 1 ASN A 16 134.50 66.40 REMARK 500 1 PHE A 17 71.84 -112.54 REMARK 500 1 ASN A 18 -42.78 -139.19 REMARK 500 1 ASP A 41 139.74 -170.63 REMARK 500 1 PRO A 82 -170.57 -69.78 REMARK 500 1 ALA A 133 117.28 -164.33 REMARK 500 1 GLU A 167 160.44 63.13 REMARK 500 1 PRO A 168 -176.66 -69.81 REMARK 500 1 LYS A 169 -179.95 -64.32 REMARK 500 2 ASN A 16 130.91 66.31 REMARK 500 2 PHE A 17 70.23 -110.69 REMARK 500 2 ASN A 18 -39.23 -133.24 REMARK 500 2 LEU A 67 176.31 -58.90 REMARK 500 2 PRO A 82 -171.42 -69.75 REMARK 500 3 ASN A 16 137.15 66.80 REMARK 500 3 PHE A 17 71.16 -116.58 REMARK 500 3 PRO A 82 -166.42 -69.77 REMARK 500 3 LYS A 83 148.76 66.73 REMARK 500 3 ALA A 117 167.07 -49.81 REMARK 500 3 PRO A 168 -175.31 -69.82 REMARK 500 4 GLU A 3 -61.19 -179.60 REMARK 500 4 ASN A 16 139.10 66.19 REMARK 500 4 PHE A 17 71.37 -116.43 REMARK 500 4 PRO A 82 -174.79 -69.76 REMARK 500 4 ALA A 133 115.59 -164.90 REMARK 500 4 THR A 165 111.31 178.95 REMARK 500 4 GLU A 167 160.78 62.63 REMARK 500 5 PRO A 4 -171.10 -69.75 REMARK 500 5 ASN A 16 135.78 66.82 REMARK 500 5 PHE A 17 71.63 -115.09 REMARK 500 5 ASP A 41 137.35 -171.76 REMARK 500 5 LEU A 67 176.10 -57.58 REMARK 500 5 PRO A 82 -164.68 -69.79 REMARK 500 5 LYS A 83 139.14 71.47 REMARK 500 5 ALA A 133 116.58 -161.40 REMARK 500 6 ALA A 7 30.40 -95.13 REMARK 500 6 ASN A 16 130.01 66.70 REMARK 500 6 PHE A 17 70.46 -111.46 REMARK 500 6 PRO A 82 -173.06 -69.79 REMARK 500 6 LYS A 85 60.61 -119.64 REMARK 500 6 ALA A 117 161.74 -47.61 REMARK 500 6 GLU A 167 160.82 63.47 REMARK 500 6 LYS A 169 -75.59 -78.45 REMARK 500 7 ASN A 16 133.01 65.86 REMARK 500 7 PHE A 17 72.03 -111.93 REMARK 500 7 ASN A 18 -40.75 -132.90 REMARK 500 7 ASP A 41 144.47 -171.87 REMARK 500 7 ARG A 48 19.89 58.85 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16646 RELATED DB: BMRB DBREF 2KRR A 1 170 UNP P19338 NUCL_HUMAN 300 468 SEQADV 2KRR PRO A 168 UNP P19338 EXPRESSION TAG SEQADV 2KRR GLU A 171 UNP P19338 EXPRESSION TAG SEQADV 2KRR GLY A 172 UNP P19338 EXPRESSION TAG SEQADV 2KRR LEU A 173 UNP P19338 EXPRESSION TAG SEQADV 2KRR GLU A 174 UNP P19338 EXPRESSION TAG SEQADV 2KRR HIS A 175 UNP P19338 EXPRESSION TAG SEQADV 2KRR HIS A 176 UNP P19338 EXPRESSION TAG SEQADV 2KRR HIS A 177 UNP P19338 EXPRESSION TAG SEQADV 2KRR HIS A 178 UNP P19338 EXPRESSION TAG SEQADV 2KRR HIS A 179 UNP P19338 EXPRESSION TAG SEQADV 2KRR HIS A 180 UNP P19338 EXPRESSION TAG SEQRES 1 A 180 GLY THR GLU PRO THR THR ALA PHE ASN LEU PHE VAL GLY SEQRES 2 A 180 ASN LEU ASN PHE ASN LYS SER ALA PRO GLU LEU LYS THR SEQRES 3 A 180 GLY ILE SER ASP VAL PHE ALA LYS ASN ASP LEU ALA VAL SEQRES 4 A 180 VAL ASP VAL ARG ILE GLY MET THR ARG LYS PHE GLY TYR SEQRES 5 A 180 VAL ASP PHE GLU SER ALA GLU ASP LEU GLU LYS ALA LEU SEQRES 6 A 180 GLU LEU THR GLY LEU LYS VAL PHE GLY ASN GLU ILE LYS SEQRES 7 A 180 LEU GLU LYS PRO LYS GLY LYS ASP SER LYS LYS GLU ARG SEQRES 8 A 180 ASP ALA ARG THR LEU LEU ALA LYS ASN LEU PRO TYR LYS SEQRES 9 A 180 VAL THR GLN ASP GLU LEU LYS GLU VAL PHE GLU ASP ALA SEQRES 10 A 180 ALA GLU ILE ARG LEU VAL SER LYS ASP GLY LYS SER LYS SEQRES 11 A 180 GLY ILE ALA TYR ILE GLU PHE LYS THR GLU ALA ASP ALA SEQRES 12 A 180 GLU LYS THR PHE GLU GLU LYS GLN GLY THR GLU ILE ASP SEQRES 13 A 180 GLY ARG SER ILE SER LEU TYR TYR THR GLY GLU PRO LYS SEQRES 14 A 180 GLY GLU GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ALA A 21 ASN A 35 1 15 HELIX 2 2 SER A 57 LEU A 67 1 11 HELIX 3 3 LYS A 88 ALA A 93 1 6 HELIX 4 4 THR A 106 GLU A 115 1 10 HELIX 5 5 THR A 139 GLU A 144 1 6 HELIX 6 6 THR A 146 GLN A 151 1 6 SHEET 1 A 4 VAL A 39 ILE A 44 0 SHEET 2 A 4 PHE A 50 PHE A 55 -1 O TYR A 52 N ARG A 43 SHEET 3 A 4 ASN A 9 GLY A 13 -1 N VAL A 12 O GLY A 51 SHEET 4 A 4 LYS A 78 GLU A 80 -1 O LYS A 78 N GLY A 13 SHEET 1 B 4 GLU A 119 LYS A 125 0 SHEET 2 B 4 LYS A 128 GLU A 136 -1 O LYS A 128 N LYS A 125 SHEET 3 B 4 THR A 95 LYS A 99 -1 N LEU A 96 O ILE A 135 SHEET 4 B 4 SER A 161 TYR A 164 -1 O TYR A 163 N LEU A 97 SHEET 1 C 2 GLU A 154 ILE A 155 0 SHEET 2 C 2 ARG A 158 SER A 159 -1 O ARG A 158 N ILE A 155 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1