HEADER TRANSFERASE 29-DEC-09 2KS6 TITLE NMR SOLUTION STRUCTURE OF ALG13 --- OBTAINED WITH ITERATIVE CS-ROSETTA TITLE 2 FROM BACKBONE NMR DATA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARAGINE-LINKED GLYCOSYLATION PROTEIN 13; COMPND 5 EC: 2.4.1.141; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ALG13, YGL047W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CS-ROSETTA, CYCLIC N-OXIDES, ENDOPLASMIC RETICULUM, KEYWDS 2 GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.F.LANGE,X.WANG,J.H.PRESTEGARD,D.BAKER REVDAT 4 01-MAY-24 2KS6 1 REMARK REVDAT 3 01-OCT-14 2KS6 1 REMARK VERSN REVDAT 2 20-APR-11 2KS6 1 JRNL REVDAT 1 12-JAN-11 2KS6 0 JRNL AUTH S.RAMAN,O.F.LANGE,P.ROSSI,M.TYKA,X.WANG,J.ARAMINI,G.LIU, JRNL AUTH 2 T.A.RAMELOT,A.ELETSKY,T.SZYPERSKI,M.A.KENNEDY,J.PRESTEGARD, JRNL AUTH 3 G.T.MONTELIONE,D.BAKER JRNL TITL NMR STRUCTURE DETERMINATION FOR LARGER PROTEINS USING JRNL TITL 2 BACKBONE-ONLY DATA. JRNL REF SCIENCE V. 327 1014 2010 JRNL REFN ISSN 0036-8075 JRNL PMID 20133520 JRNL DOI 10.1126/SCIENCE.1183649 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CS-ROSETTA REMARK 3 AUTHORS : DELAGLIO, F. ET AL. (NMRPIPE), SHEN, Y. ET AL. (CS REMARK 3 -ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000101507. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.35 MM [U-15N; U-2H; 13C,1H REMARK 210 LEU, VAL, ILE.CD1 METHYL] UDP-N-ACETYLGLUCOSAMINE TRANSFERASE REMARK 210 SUBUNIT ALG13, 20 MM SODIUM PHOSPHATE, 100 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 95% H2O/5% D2O; 0.35 MM [U-13C; U-15N; U-2H] REMARK 210 UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, 95% H2O/ REMARK 210 5% D2O; 0.35 MM [U-15N; U-2H; 13C,1H LEU, VAL, ILE.CD1 LABELED; REMARK 210 1H PHE LABELED] UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT REMARK 210 ALG13, 20 MM SODIUM PHOSPHATE, 100 MM SODIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; 0.35 MM [U-15N; U-2H; 13C,1H LEU, REMARK 210 VAL, ILE.CD1 LABELED; 1H PHE LABELED] UDP-N-ACETYLGLUCOSAMINE REMARK 210 TRANSFERASE SUBUNIT ALG13, 20 MM SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, 100% D2O; 0.35 MM [U-13C; U-15N; REMARK 210 U-2H] UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13, 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 3.5 W/V ACRYLAMIDE, 3.5 W/V (3-ACRYLAMIDOPROPYL)- REMARK 210 TRIMETHYLAMMONIUM CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HN(COCA)CB; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 S3-TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : ITERATIVE CS-ROSETTA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 39 75.09 -118.30 REMARK 500 1 ASN A 49 109.33 -59.36 REMARK 500 1 THR A 100 -105.20 -116.75 REMARK 500 1 THR A 119 -70.38 -125.09 REMARK 500 2 SER A 99 -176.87 -61.23 REMARK 500 2 THR A 100 35.39 -91.52 REMARK 500 2 MET A 141 50.12 -91.69 REMARK 500 3 PRO A 17 -132.27 -81.04 REMARK 500 3 LYS A 20 -60.02 -95.01 REMARK 500 3 PHE A 75 -58.95 -124.87 REMARK 500 3 PHE A 98 99.17 -5.09 REMARK 500 3 GLN A 103 -35.04 -134.45 REMARK 500 3 ALA A 117 84.93 -69.86 REMARK 500 4 THR A 15 -69.54 -124.99 REMARK 500 4 LEU A 21 -62.64 -95.97 REMARK 500 4 SER A 99 138.46 -171.88 REMARK 500 4 MET A 141 -145.06 -94.94 REMARK 500 5 ARG A 48 -70.02 -84.96 REMARK 500 5 TYR A 157 24.75 -149.90 REMARK 500 6 THR A 15 -83.75 -129.96 REMARK 500 6 PHE A 54 37.76 -143.09 REMARK 500 6 ILE A 199 -60.66 -108.48 REMARK 500 7 LYS A 6 109.83 -50.26 REMARK 500 7 SER A 99 -128.15 -84.99 REMARK 500 7 THR A 119 24.59 -173.87 REMARK 500 7 ASN A 143 -64.87 79.58 REMARK 500 7 LEU A 195 -64.29 -96.88 REMARK 500 8 THR A 15 -72.66 -128.50 REMARK 500 8 TYR A 50 30.49 -98.60 REMARK 500 8 PHE A 75 -59.96 -124.93 REMARK 500 8 SER A 99 -176.88 -64.85 REMARK 500 9 VAL A 40 -40.03 -133.15 REMARK 500 9 TYR A 109 67.23 -119.97 REMARK 500 9 ASN A 137 -166.14 -100.57 REMARK 500 10 ASN A 49 86.15 87.12 REMARK 500 10 TYR A 157 25.05 -146.00 REMARK 500 11 ASN A 49 67.99 106.92 REMARK 500 12 LYS A 6 109.99 -50.04 REMARK 500 12 ARG A 48 -95.04 75.03 REMARK 500 12 SER A 51 109.59 -57.32 REMARK 500 12 ILE A 105 -65.03 73.64 REMARK 500 13 THR A 100 -75.54 -125.39 REMARK 500 13 TYR A 109 -54.93 -145.06 REMARK 500 14 SER A 52 86.61 -69.86 REMARK 500 15 ARG A 48 -107.93 68.00 REMARK 500 15 PHE A 75 -59.99 -129.12 REMARK 500 16 PRO A 17 -109.64 -75.31 REMARK 500 16 THR A 119 -108.08 -115.39 REMARK 500 16 SER A 121 -29.82 -141.05 REMARK 500 17 VAL A 16 114.97 52.64 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JZC RELATED DB: PDB DBREF 2KS6 A 1 201 UNP P53178 ALG13_YEAST 2 202 SEQRES 1 A 201 GLY ILE ILE GLU GLU LYS ALA LEU PHE VAL THR CYS GLY SEQRES 2 A 201 ALA THR VAL PRO PHE PRO LYS LEU VAL SER CYS VAL LEU SEQRES 3 A 201 SER ASP GLU PHE CYS GLN GLU LEU ILE GLN TYR GLY PHE SEQRES 4 A 201 VAL ARG LEU ILE ILE GLN PHE GLY ARG ASN TYR SER SER SEQRES 5 A 201 GLU PHE GLU HIS LEU VAL GLN GLU ARG GLY GLY GLN ARG SEQRES 6 A 201 GLU SER GLN LYS ILE PRO ILE ASP GLN PHE GLY CYS GLY SEQRES 7 A 201 ASP THR ALA ARG GLN TYR VAL LEU MET ASN GLY LYS LEU SEQRES 8 A 201 LYS VAL ILE GLY PHE ASP PHE SER THR LYS MET GLN SER SEQRES 9 A 201 ILE ILE ARG ASP TYR SER ASP LEU VAL ILE SER HIS ALA SEQRES 10 A 201 GLY THR GLY SER ILE LEU ASP SER LEU ARG LEU ASN LYS SEQRES 11 A 201 PRO LEU ILE VAL CYS VAL ASN ASP SER LEU MET ASP ASN SEQRES 12 A 201 HIS GLN GLN GLN ILE ALA ASP LYS PHE VAL GLU LEU GLY SEQRES 13 A 201 TYR VAL TRP SER CYS ALA PRO THR GLU THR GLY LEU ILE SEQRES 14 A 201 ALA GLY LEU ARG ALA SER GLN THR GLU LYS LEU LYS PRO SEQRES 15 A 201 PHE PRO VAL SER HIS ASN PRO SER PHE GLU ARG LEU LEU SEQRES 16 A 201 VAL GLU THR ILE TYR SER HELIX 1 1 PRO A 17 SER A 23 1 7 HELIX 2 2 SER A 27 GLY A 38 1 12 HELIX 3 3 TYR A 50 GLU A 60 1 11 HELIX 4 4 MET A 87 LYS A 90 5 4 HELIX 5 5 LYS A 101 SER A 110 1 10 HELIX 6 6 THR A 119 LEU A 128 1 10 HELIX 7 7 MET A 141 GLY A 156 1 16 HELIX 8 8 THR A 166 GLU A 178 1 13 HELIX 9 9 HIS A 187 LEU A 195 1 9 SHEET 1 A 8 GLN A 64 SER A 67 0 SHEET 2 A 8 ARG A 82 LEU A 86 -1 O VAL A 85 N GLN A 64 SHEET 3 A 8 LEU A 91 ASP A 97 -1 O VAL A 93 N TYR A 84 SHEET 4 A 8 ARG A 41 PHE A 46 1 N LEU A 42 O ILE A 94 SHEET 5 A 8 LEU A 8 CYS A 12 1 N LEU A 8 O ARG A 41 SHEET 6 A 8 LEU A 112 HIS A 116 1 O ILE A 114 N THR A 11 SHEET 7 A 8 LEU A 132 CYS A 135 1 O ILE A 133 N SER A 115 SHEET 8 A 8 VAL A 158 CYS A 161 1 O TRP A 159 N VAL A 134 CISPEP 1 PHE A 46 GLY A 47 20 5.71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1