HEADER TRANSFERASE 03-JAN-10 2KSF TITLE BACKBONE STRUCTURE OF THE MEMBRANE DOMAIN OF E. COLI HISTIDINE KINASE TITLE 2 RECEPTOR KDPD, CENTER FOR STRUCTURES OF MEMBRANE PROTEINS (CSMP) TITLE 3 TARGET 4312C COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN KDPD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 397-502; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B0695, JW0683, KDPD; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PIVEX2.3 KEYWDS METHODS DEVELOPMENT, HISTIDINE KINASE RECEPTOR, MEMBRANE DOMAIN, KEYWDS 2 FOUR-HELICAL BUNDLE, CELL-FREE SYNTHESIS, ATP-BINDING, CELL INNER KEYWDS 3 MEMBRANE, CELL MEMBRANE, KINASE, MEMBRANE, NUCLEOTIDE-BINDING, KEYWDS 4 PHOSPHOPROTEIN, TRANSFERASE, TRANSMEMBRANE, TWO-COMPONENT REGULATORY KEYWDS 5 SYSTEM, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 6 CENTER FOR STRUCTURES OF MEMBRANE PROTEINS, CSMP EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.MASLENNIKOV,C.KLAMMT,G.KEFALA,M.OKAMURA,L.ESQUIVIES,W.KWIATKOWSKI, AUTHOR 2 S.CHOE,CENTER FOR STRUCTURES OF MEMBRANE PROTEINS (CSMP) REVDAT 3 01-MAY-24 2KSF 1 REMARK SEQADV REVDAT 2 05-DEC-12 2KSF 1 JRNL VERSN REVDAT 1 02-MAR-10 2KSF 0 JRNL AUTH I.MASLENNIKOV,C.KLAMMT,E.HWANG,G.KEFALA,M.OKAMURA, JRNL AUTH 2 L.ESQUIVIES,K.MORS,C.GLAUBITZ,W.KWIATKOWSKI,Y.H.JEON,S.CHOE JRNL TITL MEMBRANE DOMAIN STRUCTURES OF THREE CLASSES OF HISTIDINE JRNL TITL 2 KINASE RECEPTORS BY CELL-FREE EXPRESSION AND RAPID NMR JRNL TITL 3 ANALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 10902 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20498088 JRNL DOI 10.1073/PNAS.1001656107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.6, CNS 1.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000101516. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM DSS, 20 MM MES-BISTRIS, REMARK 210 100 MM 1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1- REMARK 210 GLYCEROL)], 0.3 MM [U-99% 13C; U-99% 15N] PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(CO)CA; 3D REMARK 210 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 2K.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 463 HG1 THR A 469 1.41 REMARK 500 O GLN A 476 HG1 THR A 480 1.44 REMARK 500 O ILE A 491 HG1 THR A 495 1.45 REMARK 500 O ALA A 482 HG1 THR A 486 1.50 REMARK 500 O VAL A 429 H LEU A 433 1.57 REMARK 500 O LEU A 489 HD21 ASN A 493 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 400 80.11 66.66 REMARK 500 1 ALA A 422 -98.98 70.82 REMARK 500 1 PHE A 423 41.92 179.23 REMARK 500 1 ALA A 426 163.85 167.06 REMARK 500 1 ASN A 427 38.07 -90.05 REMARK 500 1 VAL A 429 -69.81 -143.61 REMARK 500 1 TRP A 446 125.88 83.74 REMARK 500 1 VAL A 449 -55.13 67.76 REMARK 500 1 PHE A 462 76.25 -61.68 REMARK 500 1 PHE A 463 -55.36 179.37 REMARK 500 1 ILE A 464 50.44 -91.45 REMARK 500 1 ARG A 467 61.03 -65.15 REMARK 500 1 THR A 469 46.01 31.02 REMARK 500 2 GLN A 398 -171.73 63.62 REMARK 500 2 GLN A 400 -167.46 61.48 REMARK 500 2 MET A 421 59.86 -145.71 REMARK 500 2 ALA A 422 -177.06 -171.83 REMARK 500 2 ASN A 427 63.48 77.72 REMARK 500 2 ARG A 445 45.61 -152.23 REMARK 500 2 TRP A 446 126.39 79.96 REMARK 500 2 ILE A 464 87.15 58.12 REMARK 500 2 ALA A 465 72.12 74.98 REMARK 500 2 ARG A 467 -70.60 84.67 REMARK 500 2 ALA A 471 -63.79 -124.17 REMARK 500 2 SER A 473 30.07 -92.76 REMARK 500 2 ASP A 474 -69.39 -124.24 REMARK 500 2 GLN A 501 130.88 79.82 REMARK 500 3 ILE A 399 131.46 70.83 REMARK 500 3 MET A 421 65.43 179.46 REMARK 500 3 ALA A 426 -73.16 -81.43 REMARK 500 3 ASN A 427 -84.71 -125.81 REMARK 500 3 TRP A 446 125.70 -178.56 REMARK 500 3 SER A 448 65.82 -164.69 REMARK 500 3 VAL A 449 -69.24 64.92 REMARK 500 3 PHE A 463 -61.08 69.65 REMARK 500 3 ALA A 471 56.85 -67.85 REMARK 500 3 VAL A 472 -54.28 -151.96 REMARK 500 3 SER A 473 42.33 -154.37 REMARK 500 4 VAL A 397 136.86 77.07 REMARK 500 4 GLN A 398 -61.08 -127.84 REMARK 500 4 GLN A 400 -175.04 66.46 REMARK 500 4 MET A 421 78.65 -179.19 REMARK 500 4 ALA A 425 57.64 -66.81 REMARK 500 4 ALA A 426 -61.29 -152.50 REMARK 500 4 LEU A 428 -58.57 72.52 REMARK 500 4 ARG A 445 -56.12 -138.58 REMARK 500 4 SER A 448 -174.14 176.90 REMARK 500 4 PHE A 462 59.14 -69.89 REMARK 500 4 PHE A 463 61.72 -158.18 REMARK 500 4 ALA A 465 73.08 51.71 REMARK 500 REMARK 500 THIS ENTRY HAS 254 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4312C RELATED DB: TARGETDB DBREF 2KSF A 397 502 UNP P21865 KDPD_ECOLI 397 502 SEQADV 2KSF MET A 396 UNP P21865 INITIATING METHIONINE SEQADV 2KSF SER A 402 UNP P21865 CYS 402 CONFLICT SEQADV 2KSF SER A 409 UNP P21865 CYS 409 CONFLICT SEQRES 1 A 107 MET VAL GLN ILE GLN GLY SER VAL VAL ALA ALA ALA LEU SEQRES 2 A 107 SER ALA VAL ILE THR LEU ILE ALA MET GLN TRP LEU MET SEQRES 3 A 107 ALA PHE ASP ALA ALA ASN LEU VAL MET LEU TYR LEU LEU SEQRES 4 A 107 GLY VAL VAL VAL VAL ALA LEU PHE TYR GLY ARG TRP PRO SEQRES 5 A 107 SER VAL VAL ALA THR VAL ILE ASN VAL VAL SER PHE ASP SEQRES 6 A 107 LEU PHE PHE ILE ALA PRO ARG GLY THR LEU ALA VAL SER SEQRES 7 A 107 ASP VAL GLN TYR LEU LEU THR PHE ALA VAL MET LEU THR SEQRES 8 A 107 VAL GLY LEU VAL ILE GLY ASN LEU THR ALA GLY VAL ARG SEQRES 9 A 107 TYR GLN ALA HELIX 1 1 GLY A 401 MET A 421 1 21 HELIX 2 2 VAL A 429 GLY A 444 1 16 HELIX 3 3 VAL A 449 PHE A 462 1 14 HELIX 4 4 ASP A 474 ARG A 499 1 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1