HEADER TRANSPORT PROTEIN 19-JAN-10 2KT6 TITLE STRUCTURAL HOMOLOGY BETWEEN THE C-TERMINAL DOMAIN OF THE PAPC USHER TITLE 2 AND ITS PLUG COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE USHER PROTEIN PAPC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 752-836; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PAPC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS PILUS, CHAPERONE-USHER, GRAM-NEGATIVE, CELL MEMBRANE, CELL OUTER KEYWDS 2 MEMBRANE, DISULFIDE BOND, FIMBRIUM BIOGENESIS, MEMBRANE, KEYWDS 3 TRANSMEMBRANE, TRANSPORT, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.FORD,A.REGO,T.J.RAGAN,J.PINKNER,K.DODSON,P.C.DRISCOLL,S.HULTGREN, AUTHOR 2 G.WAKSMAN REVDAT 2 16-MAR-22 2KT6 1 REMARK REVDAT 1 21-APR-10 2KT6 0 JRNL AUTH B.FORD,A.T.REGO,T.J.RAGAN,J.PINKNER,K.DODSON,P.C.DRISCOLL, JRNL AUTH 2 S.HULTGREN,G.WAKSMAN JRNL TITL STRUCTURAL HOMOLOGY BETWEEN THE C-TERMINAL DOMAIN OF THE JRNL TITL 2 PAPC USHER AND ITS PLUG. JRNL REF J.BACTERIOL. V. 192 1824 2010 JRNL REFN ISSN 0021-9193 JRNL PMID 20118254 JRNL DOI 10.1128/JB.01677-09 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 2.1, X-PLOR NIH REMARK 3 AUTHORS : CCPN (CCPNMR ANALYSIS), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH REMARK 4 REMARK 4 2KT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000101542. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM MES, 20 MM SODIUM REMARK 210 CHLORIDE, 300-500 MM [U-15N] CTD_ REMARK 210 ACTUAL, 95% H2O/5% D2O; 20 MM REMARK 210 MES, 20 MM SODIUM CHLORIDE, 300- REMARK 210 500 MM [U-15N, U-13C] CTD_ACTUAL, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCO; HN(CA)CO; REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D 1H-15N REMARK 210 TOCSY SHORT; 3D 1H-15N TOCSY REMARK 210 LONG; 3D HCCH-TOCSY; TSNOESY_N; REMARK 210 3D 1H-13C NOESY; CBCACONH; 2D 1H- REMARK 210 1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; UNITY REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.1, DANGLE 1.1, REMARK 210 NMRPIPE, X-PLOR NIH REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 66.28 -119.65 REMARK 500 1 LYS A 5 -140.38 -153.73 REMARK 500 1 PHE A 21 109.61 -48.56 REMARK 500 1 ALA A 23 95.73 -65.29 REMARK 500 1 ASP A 38 122.10 148.98 REMARK 500 1 GLU A 39 -102.20 52.13 REMARK 500 1 TRP A 57 -142.95 -147.23 REMARK 500 1 LYS A 60 -140.31 74.69 REMARK 500 2 LYS A 3 53.79 -93.37 REMARK 500 2 LYS A 5 -141.77 -155.54 REMARK 500 2 ALA A 23 94.76 -59.00 REMARK 500 2 SER A 24 93.01 -57.46 REMARK 500 2 ASP A 38 116.91 72.41 REMARK 500 2 GLU A 39 -95.23 62.87 REMARK 500 2 TRP A 57 -138.21 -161.84 REMARK 500 2 LYS A 60 -142.26 71.18 REMARK 500 2 ILE A 61 95.35 -67.98 REMARK 500 2 GLN A 62 -37.30 -139.04 REMARK 500 2 ASP A 74 -4.22 71.76 REMARK 500 2 GLN A 75 -166.05 -112.70 REMARK 500 3 LYS A 5 72.03 -154.10 REMARK 500 3 ARG A 6 114.73 -177.20 REMARK 500 3 PHE A 21 99.74 -30.42 REMARK 500 3 ALA A 23 95.86 -58.94 REMARK 500 3 ASP A 38 139.39 150.31 REMARK 500 3 GLU A 39 -100.26 28.12 REMARK 500 3 SER A 45 87.88 -56.71 REMARK 500 3 ASP A 58 -58.52 -12.58 REMARK 500 3 LYS A 60 -141.83 173.36 REMARK 500 3 ILE A 72 -82.04 -130.48 REMARK 500 3 SER A 73 137.67 -172.05 REMARK 500 3 ASP A 74 -163.23 55.89 REMARK 500 3 GLN A 75 150.30 65.73 REMARK 500 3 GLN A 84 -76.28 -134.37 REMARK 500 4 LYS A 5 -146.34 -150.01 REMARK 500 4 PRO A 20 -161.76 -104.27 REMARK 500 4 ALA A 23 96.43 -53.30 REMARK 500 4 ARG A 31 -178.30 -63.95 REMARK 500 4 GLU A 32 -158.67 87.27 REMARK 500 4 ASP A 38 -167.70 178.68 REMARK 500 4 ASP A 58 -68.23 -15.62 REMARK 500 4 LYS A 60 -168.79 172.91 REMARK 500 4 ASP A 74 147.72 70.91 REMARK 500 4 GLN A 75 -166.96 62.73 REMARK 500 5 SER A 17 -168.54 -75.74 REMARK 500 5 PHE A 21 107.12 -30.23 REMARK 500 5 ALA A 23 89.62 -61.84 REMARK 500 5 ARG A 31 99.04 -69.99 REMARK 500 5 MET A 35 99.82 -163.62 REMARK 500 5 ASP A 38 125.38 72.81 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 18 PRO A 19 1 148.62 REMARK 500 ARG A 6 LEU A 7 2 -144.69 REMARK 500 GLN A 18 PRO A 19 2 148.28 REMARK 500 GLU A 32 LEU A 33 4 -144.20 REMARK 500 GLN A 18 PRO A 19 8 149.51 REMARK 500 GLN A 18 PRO A 19 9 -133.82 REMARK 500 GLN A 18 PRO A 19 10 140.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L48 RELATED DB: PDB REMARK 900 CORRESPONDING X-RAY CRYSTAL STRUCTURE DBREF 2KT6 A 1 85 UNP P07110 PAPC_ECOLX 752 836 SEQRES 1 A 85 VAL LEU LYS GLY LYS ARG LEU PHE ALA ILE LEU ARG LEU SEQRES 2 A 85 ALA ASP GLY SER GLN PRO PRO PHE GLY ALA SER VAL THR SEQRES 3 A 85 SER GLU LYS GLY ARG GLU LEU GLY MET VAL ALA ASP GLU SEQRES 4 A 85 GLY LEU ALA TRP LEU SER GLY VAL THR PRO GLY GLU THR SEQRES 5 A 85 LEU SER VAL ASN TRP ASP GLY LYS ILE GLN CYS GLN VAL SEQRES 6 A 85 ASN VAL PRO GLU THR ALA ILE SER ASP GLN GLN LEU LEU SEQRES 7 A 85 LEU PRO CYS THR PRO GLN LYS SHEET 1 A 5 LEU A 41 LEU A 44 0 SHEET 2 A 5 LEU A 7 LEU A 13 -1 N ALA A 9 O ALA A 42 SHEET 3 A 5 GLN A 76 PRO A 83 1 O CYS A 81 N ARG A 12 SHEET 4 A 5 CYS A 63 VAL A 67 -1 N GLN A 64 O THR A 82 SHEET 5 A 5 GLU A 51 THR A 52 -1 N GLU A 51 O VAL A 67 SHEET 1 B 3 GLU A 32 MET A 35 0 SHEET 2 B 3 SER A 24 THR A 26 -1 N VAL A 25 O GLY A 34 SHEET 3 B 3 VAL A 55 ASN A 56 -1 O ASN A 56 N SER A 24 SSBOND 1 CYS A 63 CYS A 81 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1