HEADER CELL ADHESION, MEMBRANE PROTEIN 20-JAN-10 2KT7 TITLE SOLUTION NMR STRUCTURE OF MUCIN-BINDING DOMAIN OF PROTEIN LMO0835 FROM TITLE 2 LISTERIA MONOCYTOGENES, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET LMR64A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PEPTIDOGLYCAN BOUND PROTEIN (LPXTG MOTIF); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 34-128; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 STRAIN: EGD-E; SOURCE 5 GENE: LMO0835; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS IMMUNOGLOBULIN FOLD, ALL-BETA, PEPTIDOGLYCAN BINDING PROTEIN, LPXTG KEYWDS 2 MOTIF, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, CELL ADHESION, KEYWDS 4 MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,Y.HE,D.LEE,C.CICCOSANTI,H.JANJUA,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 16-MAR-22 2KT7 1 REMARK SEQADV REVDAT 1 09-FEB-10 2KT7 0 JRNL AUTH A.ELETSKY,Y.HE,D.LEE,C.CICCOSANTI,H.JANJUA,T.B.ACTON,R.XIAO, JRNL AUTH 2 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF MUCIN-BINDING DOMAIN OF PROTEIN JRNL TITL 2 LMO0835 FROM LISTERIA MONOCYTOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 2.1B, CNS 1.2.1 REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE PROGRAMS CYANA AND AUTOSTRUCTURE REMARK 3 WERE USED TO DERIVE CONSENSUS PEAK ASSIGNMENTS FOLLOWED BY REMARK 3 ITERATIVE REFINEMENT WITH CYANA USING NOE-BASED CONSTRAINTS AND REMARK 3 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS+. THE 20 REMARK 3 CONFORMERS OUT OF 100 WITH THE LOWEST TARGET FUNCTION WERE REMARK 3 FURTHER REFINED BY SIMULATED ANNEALING IN EXPLICIT WATER BATH REMARK 3 USING THE PROGRAM CNS WITH PARAM19 FORCE FIELD. REMARK 4 REMARK 4 2KT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000101543. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 225 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-13C; U-15N] LMR64A REMARK 210 PROTEIN, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.01 % SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 0.9 MM [U-5% 13C; REMARK 210 U-15N] LMR64AB PROTEIN, 20 MM REMARK 210 MES, 100 MM SODIUM CHLORIDE, 5 REMARK 210 MM CALCIUM CHLORIDE, 0.01 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D 15N T1; 1D 15N T2; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C CT-HSQC REMARK 210 ALIPHATIC; 2D 1H-13C CT-HSQC REMARK 210 AROMATIC; 3D HNCO; 3D CBCA(CO)NH; REMARK 210 3D HN(CA)CO; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D (H)CCH-TOCSY REMARK 210 ALIPHATIC; 3D (H)CCH-COSY REMARK 210 ALIPHATIC; 3D (H)CCH-COSY REMARK 210 AROMATIC; 3D 1H-15N,13C NOESY; REMARK 210 2D 1H-15N LR-HSQC (HISTIDINE); REMARK 210 2D 1H-13C CT-HSQC METHYL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PROSA 6.4, CARA 1.8.4, PINE 1.0, REMARK 210 CYANA 2.1, AUTOSTRUCTURE 2.2.1, REMARK 210 TALOS+ 1.2009.0721.18, PSVS 1.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 64 87.85 -68.41 REMARK 500 1 PRO A 72 106.77 -59.20 REMARK 500 1 HIS A 81 -8.38 -57.93 REMARK 500 1 ILE A 87 94.93 -67.17 REMARK 500 1 ASP A 103 156.70 66.97 REMARK 500 1 TYR A 106 50.94 -107.34 REMARK 500 1 ASP A 108 -10.95 63.96 REMARK 500 1 LYS A 112 -65.19 -168.31 REMARK 500 1 PRO A 116 170.30 -58.27 REMARK 500 1 ASN A 122 -163.35 65.32 REMARK 500 1 SER A 123 150.76 69.90 REMARK 500 1 GLU A 124 16.17 56.21 REMARK 500 1 LEU A 128 -48.56 73.81 REMARK 500 2 ASP A 35 -81.70 -99.29 REMARK 500 2 THR A 36 70.27 -104.54 REMARK 500 2 ASN A 37 -69.28 72.17 REMARK 500 2 ASN A 38 77.98 42.60 REMARK 500 2 PHE A 39 91.55 -55.05 REMARK 500 2 ASP A 70 85.57 -68.85 REMARK 500 2 ILE A 87 93.85 -67.22 REMARK 500 2 VAL A 104 29.35 -168.83 REMARK 500 2 THR A 110 -160.59 -170.65 REMARK 500 2 LYS A 112 -168.25 -124.35 REMARK 500 2 ASP A 113 -70.61 70.63 REMARK 500 2 LEU A 114 -169.24 54.93 REMARK 500 2 ILE A 120 125.44 62.45 REMARK 500 2 ALA A 125 -37.21 74.32 REMARK 500 3 THR A 36 -53.60 -141.24 REMARK 500 3 PHE A 39 88.88 -64.68 REMARK 500 3 TYR A 64 90.20 -69.97 REMARK 500 3 ILE A 87 94.83 -69.44 REMARK 500 3 ASP A 103 -154.05 -87.26 REMARK 500 3 SER A 105 -82.01 61.19 REMARK 500 3 TYR A 106 -89.76 47.90 REMARK 500 3 VAL A 107 75.17 63.07 REMARK 500 3 ASP A 108 22.13 -78.74 REMARK 500 3 VAL A 117 126.66 69.01 REMARK 500 3 SER A 123 -155.84 -163.58 REMARK 500 3 GLU A 124 -52.53 76.24 REMARK 500 4 ASN A 37 90.79 -66.95 REMARK 500 4 ASP A 70 83.10 -67.63 REMARK 500 4 PRO A 72 99.12 -58.71 REMARK 500 4 ILE A 87 95.38 -67.20 REMARK 500 4 TYR A 106 63.62 63.61 REMARK 500 4 ASP A 113 87.03 57.78 REMARK 500 4 LEU A 114 5.21 -164.93 REMARK 500 4 VAL A 118 -161.29 37.17 REMARK 500 4 SER A 123 -74.72 -162.85 REMARK 500 4 VAL A 127 101.65 63.60 REMARK 500 4 HIS A 130 106.98 -55.80 REMARK 500 REMARK 500 THIS ENTRY HAS 249 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LMR64A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16686 RELATED DB: BMRB DBREF 2KT7 A 35 129 UNP Q8Y8R0 Q8Y8R0_LISMO 34 128 SEQADV 2KT7 MET A 34 UNP Q8Y8R0 INITIATING METHIONINE SEQADV 2KT7 THR A 58 UNP Q8Y8R0 ILE 57 VARIANT SEQADV 2KT7 ILE A 101 UNP Q8Y8R0 THR 100 VARIANT SEQADV 2KT7 SER A 105 UNP Q8Y8R0 ARG 104 VARIANT SEQADV 2KT7 HIS A 130 UNP Q8Y8R0 EXPRESSION TAG SEQADV 2KT7 HIS A 131 UNP Q8Y8R0 EXPRESSION TAG SEQADV 2KT7 HIS A 132 UNP Q8Y8R0 EXPRESSION TAG SEQADV 2KT7 HIS A 133 UNP Q8Y8R0 EXPRESSION TAG SEQADV 2KT7 HIS A 134 UNP Q8Y8R0 EXPRESSION TAG SEQADV 2KT7 HIS A 135 UNP Q8Y8R0 EXPRESSION TAG SEQRES 1 A 102 MET ASP THR ASN ASN PHE THR VAL LYS VAL GLU TYR VAL SEQRES 2 A 102 ASP ALA ASP GLY ALA GLU ILE ALA PRO SER ASP THR LEU SEQRES 3 A 102 THR ASP TYR HIS TYR VAL SER THR PRO LYS ASP ILE PRO SEQRES 4 A 102 GLY TYR LYS LEU ARG GLU ILE PRO HIS ASN ALA THR GLY SEQRES 5 A 102 ASN ILE THR ASP THR GLY ILE ILE VAL ARG TYR ILE TYR SEQRES 6 A 102 ASP LYS ILE ILE ASP VAL SER TYR VAL ASP GLU THR GLY SEQRES 7 A 102 LYS ASP LEU LEU PRO VAL VAL GLU ILE ILE ASN SER GLU SEQRES 8 A 102 ALA ALA VAL LEU GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 4 GLU A 52 LEU A 59 0 SHEET 2 A 4 VAL A 41 ASP A 47 -1 N VAL A 41 O LEU A 59 SHEET 3 A 4 ILE A 92 LYS A 100 1 O ILE A 92 N LYS A 42 SHEET 4 A 4 TYR A 74 GLU A 78 -1 N LYS A 75 O ASP A 99 SHEET 1 B 2 HIS A 63 VAL A 65 0 SHEET 2 B 2 THR A 84 ASN A 86 -1 N GLY A 85 O TYR A 64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1