data_2KUY # _entry.id 2KUY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KUY pdb_00002kuy 10.2210/pdb2kuy/pdb RCSB RCSB101604 ? ? BMRB 16747 ? ? WWPDB D_1000101604 ? ? # _pdbx_database_related.db_id 16747 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KUY _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-01 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Venugopal, H.' 1 'Edwards, P.' 2 'Schwalbe, M.' 3 'Claridge, J.' 4 'Stepper, J.' 5 'Patchett, M.' 6 'Loo, T.' 7 'Libich, D.' 8 'Norris, G.' 9 'Pascal, S.' 10 # _citation.id primary _citation.title 'Structural, dynamic, and chemical characterization of a novel s-glycosylated bacteriocin.' _citation.journal_abbrev Biochemistry _citation.journal_volume 50 _citation.page_first 2748 _citation.page_last 2755 _citation.year 2011 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21395300 _citation.pdbx_database_id_DOI 10.1021/bi200217u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Venugopal, H.' 1 ? primary 'Edwards, P.J.' 2 ? primary 'Schwalbe, M.' 3 ? primary 'Claridge, J.K.' 4 ? primary 'Libich, D.S.' 5 ? primary 'Stepper, J.' 6 ? primary 'Loo, T.' 7 ? primary 'Patchett, M.L.' 8 ? primary 'Norris, G.E.' 9 ? primary 'Pascal, S.M.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Prebacteriocin glycocin F' 4806.380 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGIKHHSSGSSSYHC _entity_poly.pdbx_seq_one_letter_code_can KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGIKHHSSGSSSYHC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 PRO n 1 3 ALA n 1 4 TRP n 1 5 CYS n 1 6 TRP n 1 7 TYR n 1 8 THR n 1 9 LEU n 1 10 ALA n 1 11 MET n 1 12 CYS n 1 13 GLY n 1 14 ALA n 1 15 GLY n 1 16 TYR n 1 17 ASP n 1 18 SER n 1 19 GLY n 1 20 THR n 1 21 CYS n 1 22 ASP n 1 23 TYR n 1 24 MET n 1 25 TYR n 1 26 SER n 1 27 HIS n 1 28 CYS n 1 29 PHE n 1 30 GLY n 1 31 ILE n 1 32 LYS n 1 33 HIS n 1 34 HIS n 1 35 SER n 1 36 SER n 1 37 GLY n 1 38 SER n 1 39 SER n 1 40 SER n 1 41 TYR n 1 42 HIS n 1 43 CYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Lactobacillus plantarum' _entity_src_nat.pdbx_ncbi_taxonomy_id 1590 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code E9K9Z1_LACPL _struct_ref.pdbx_db_accession E9K9Z1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_seq_one_letter_code KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGIKHHSSGSSSYHC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KUY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 43 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession E9K9Z1 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 64 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 43 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-1H NOESY' 1 5 1 '2D DQF-COSY' 1 6 1 '2D 1H-13C HMBC' 1 7 1 '2D 1H-13C H2BC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.pH . _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '3 mM Glycocin F-1, 40% Acetonitrile 50% H2O 10% D20' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '40% Acetonitrile 50% H2O 10% D20' # _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2KUY _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KUY _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KUY _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA ? 1 ;Linge, O'Donoghue and Nilges ; refinement ARIA ? 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'S-glycosylated bacteriocin from Lactobacillus Plantarum' _exptl.entry_id 2KUY _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KUY _struct.title 'Structure of Glycocin F' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KUY _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'bacteriocin, glycosylation, lactobacillus, S-linked, ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TRP A 4 ? MET A 11 ? TRP A 4 MET A 11 1 ? 8 HELX_P HELX_P2 2 GLY A 19 ? GLY A 30 ? GLY A 19 GLY A 30 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 5 A CYS 28 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 12 A CYS 21 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale one ? A SER 18 OG ? ? ? 1_555 B NAG . C1 ? ? A SER 18 A NAG 44 1_555 ? ? ? ? ? ? ? 1.499 ? O-Glycosylation covale2 covale one ? A CYS 43 SG ? ? ? 1_555 C NAG . C1 ? ? A CYS 43 A NAG 45 1_555 ? ? ? ? ? ? ? 1.803 ? S-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _atom_sites.entry_id 2KUY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'NAG A 44 HAS WRONG CHIRALITY AT ATOM C5' 2 'NAG A 44 HAS WRONG CHIRALITY AT ATOM C4' 3 'NAG A 44 HAS WRONG CHIRALITY AT ATOM C2' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TRP 4 4 4 TRP TRP A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 CYS 43 43 43 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 44 44 NAG NAG A . C 2 NAG 1 45 45 NAG NAG A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id SER _pdbx_struct_mod_residue.label_seq_id 18 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id SER _pdbx_struct_mod_residue.auth_seq_id 18 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-05-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-05 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-06-14 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' Other 5 4 'Structure model' Advisory 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Database references' 10 5 'Structure model' Other 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' struct_conn 5 4 'Structure model' chem_comp 6 4 'Structure model' database_PDB_caveat 7 4 'Structure model' entity 8 4 'Structure model' pdbx_chem_comp_identifier 9 4 'Structure model' pdbx_entity_nonpoly 10 4 'Structure model' struct_conn 11 4 'Structure model' struct_site 12 4 'Structure model' struct_site_gen 13 5 'Structure model' chem_comp 14 5 'Structure model' database_2 15 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.type' 2 3 'Structure model' '_pdbx_database_status.status_code_cs' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_chem_comp.name' 6 4 'Structure model' '_entity.pdbx_description' 7 4 'Structure model' '_pdbx_entity_nonpoly.name' 8 4 'Structure model' '_struct_conn.pdbx_role' 9 5 'Structure model' '_chem_comp.pdbx_synonyms' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.component 'Glycocin F-1' _pdbx_nmr_exptl_sample.concentration 3 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 2 ? ? -49.12 177.03 2 1 ALA A 3 ? ? -168.69 78.73 3 1 CYS A 5 ? ? -62.50 -84.26 4 1 ALA A 14 ? ? -175.36 44.43 5 1 ASP A 17 ? ? 176.17 92.24 6 1 SER A 18 ? ? -132.75 -79.45 7 1 TYR A 23 ? ? -91.56 -69.78 8 1 PHE A 29 ? ? -108.66 -70.29 9 1 SER A 35 ? ? -53.88 96.38 10 1 SER A 36 ? ? -170.76 -62.91 11 1 SER A 38 ? ? -66.66 -175.04 12 1 SER A 40 ? ? -157.82 69.74 13 1 HIS A 42 ? ? 52.36 84.26 14 2 CYS A 12 ? ? -48.57 170.44 15 2 ALA A 14 ? ? 69.63 -69.33 16 2 ASP A 17 ? ? 60.68 65.24 17 2 TYR A 23 ? ? -82.09 -73.02 18 2 ILE A 31 ? ? -154.75 72.83 19 2 LYS A 32 ? ? -155.31 34.12 20 2 HIS A 33 ? ? 66.43 91.42 21 2 SER A 35 ? ? -179.45 149.88 22 2 SER A 39 ? ? -130.39 -59.80 23 2 SER A 40 ? ? 66.07 62.58 24 2 TYR A 41 ? ? -115.84 -76.55 25 3 ALA A 3 ? ? -94.79 45.60 26 3 CYS A 5 ? ? -60.26 -72.52 27 3 CYS A 12 ? ? -51.76 -74.14 28 3 ASP A 17 ? ? -91.51 49.54 29 3 TYR A 23 ? ? -75.69 -71.02 30 3 LYS A 32 ? ? 49.88 90.46 31 3 HIS A 33 ? ? -175.35 94.01 32 3 SER A 36 ? ? 54.01 76.26 33 3 HIS A 42 ? ? -145.12 -54.75 34 4 ALA A 3 ? ? -155.68 78.86 35 4 ASP A 17 ? ? -62.90 78.68 36 4 TYR A 23 ? ? -97.75 -64.71 37 4 PHE A 29 ? ? -87.55 -83.33 38 4 SER A 39 ? ? -134.69 -67.34 39 5 ALA A 14 ? ? 68.44 151.22 40 5 ASP A 17 ? ? -161.27 53.26 41 5 TYR A 25 ? ? -63.46 -83.15 42 5 PHE A 29 ? ? 78.55 121.05 43 5 HIS A 33 ? ? 66.92 97.95 44 5 SER A 39 ? ? -154.72 -61.30 45 5 SER A 40 ? ? -179.40 -46.99 46 5 HIS A 42 ? ? 51.02 75.77 47 6 PRO A 2 ? ? -76.53 -168.83 48 6 CYS A 5 ? ? -53.35 -77.03 49 6 CYS A 12 ? ? -48.63 151.97 50 6 ALA A 14 ? ? 75.56 69.47 51 6 TYR A 16 ? ? 172.12 86.88 52 6 SER A 18 ? ? -99.17 -69.22 53 6 TYR A 23 ? ? -82.10 -73.57 54 6 ILE A 31 ? ? 51.18 81.07 55 6 HIS A 33 ? ? -172.16 52.45 56 6 SER A 36 ? ? -97.77 -73.33 57 6 SER A 38 ? ? 69.54 -67.73 58 6 SER A 39 ? ? -175.49 75.20 59 6 HIS A 42 ? ? -102.36 44.70 60 7 ALA A 3 ? ? -175.82 39.17 61 7 ALA A 14 ? ? 67.14 69.05 62 7 ASP A 17 ? ? 53.33 84.38 63 7 TYR A 23 ? ? -77.97 -73.00 64 7 TYR A 25 ? ? -49.05 -76.24 65 7 PHE A 29 ? ? 68.50 95.31 66 7 HIS A 34 ? ? -165.22 100.50 67 7 SER A 38 ? ? 51.77 81.70 68 8 ALA A 3 ? ? -110.25 77.33 69 8 TYR A 16 ? ? 171.53 -32.76 70 8 ASP A 17 ? ? -102.95 69.17 71 8 TYR A 23 ? ? -93.49 -69.64 72 8 LYS A 32 ? ? -107.78 55.40 73 8 HIS A 34 ? ? -157.74 77.69 74 8 SER A 36 ? ? -106.25 74.55 75 8 SER A 39 ? ? -179.87 73.14 76 8 SER A 40 ? ? 51.02 71.10 77 8 TYR A 41 ? ? -91.54 -69.56 78 9 PRO A 2 ? ? -55.86 88.42 79 9 CYS A 12 ? ? -47.09 172.99 80 9 ALA A 14 ? ? -50.04 174.50 81 9 ASP A 17 ? ? 63.42 83.18 82 9 SER A 18 ? ? -125.91 -59.67 83 9 SER A 36 ? ? -156.69 65.64 84 9 SER A 40 ? ? 54.77 95.24 85 9 HIS A 42 ? ? -163.21 36.16 86 10 ALA A 3 ? ? -151.67 78.65 87 10 ALA A 14 ? ? -153.10 40.69 88 10 LYS A 32 ? ? 50.35 89.38 89 10 HIS A 34 ? ? -177.88 57.05 90 10 SER A 35 ? ? -65.70 89.46 91 10 SER A 36 ? ? 58.63 -179.08 92 10 SER A 38 ? ? -165.80 92.30 93 10 SER A 39 ? ? -167.42 102.23 94 11 PRO A 2 ? ? -44.65 159.90 95 11 CYS A 12 ? ? -106.64 -85.78 96 11 ILE A 31 ? ? 56.03 85.17 97 11 HIS A 34 ? ? -146.45 34.82 98 11 SER A 35 ? ? 174.18 167.00 99 11 SER A 36 ? ? -110.16 -77.29 100 11 SER A 39 ? ? -156.09 -45.21 101 12 ALA A 3 ? ? -176.40 47.05 102 12 CYS A 12 ? ? -59.95 179.36 103 12 ALA A 14 ? ? -142.19 36.96 104 12 THR A 20 ? ? -105.23 -62.36 105 12 LYS A 32 ? ? -175.89 98.60 106 12 SER A 35 ? ? -68.50 87.16 107 12 SER A 38 ? ? -161.51 -77.23 108 12 SER A 39 ? ? -171.33 59.38 109 12 SER A 40 ? ? -166.39 88.55 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 7 C5 ? A NAG 44 ? PLANAR . 2 8 C4 ? A NAG 44 ? PLANAR . 3 9 C2 ? A NAG 44 ? PLANAR . 4 9 C5 ? A NAG 44 ? PLANAR . 5 11 C5 ? A NAG 44 ? PLANAR . 6 12 C4 ? A NAG 44 ? PLANAR . 7 12 C5 ? A NAG 44 ? PLANAR . # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG #