HEADER GENE REGULATION 04-MAR-10 2KV2 TITLE SOLUTION STRUCTURE OF THE HUMAN BLM HRDC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLOOM SYNDROME PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HRDC DOMAIN, UNP RESIDUES 1210-1294; COMPND 5 SYNONYM: BLM, RECQ PROTEIN-LIKE 3, DNA HELICASE, RECQ-LIKE TYPE 2, COMPND 6 RECQ2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BLM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS BLOOM SYNDROME, HRDC DOMAIN, DISEASE MUTATION, DNA REPLICATION, DNA- KEYWDS 2 BINDING, NUCLEOTIDE-BINDING, NUCLEUS, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.M.KIM,B.-S.CHOI REVDAT 2 01-MAY-24 2KV2 1 REMARK REVDAT 1 15-DEC-10 2KV2 0 JRNL AUTH Y.M.KIM,B.-S.CHOI JRNL TITL STRUCTURE AND FUNCTION OF THE REGULATORY HRDC DOMAIN FROM JRNL TITL 2 HUMAN BLOOM SYNDROME PROTEIN JRNL REF NUCLEIC ACIDS RES. V. 38 7764 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20639533 JRNL DOI 10.1093/NAR/GKQ586 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000101608. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM [U-99% 13C; U-99% 15N] BLM REMARK 210 HRDC DOMAIN; 1MM DTT; 20MM HEPES; REMARK 210 100MM SODIUM CHLORIDE; 0.02% REMARK 210 SODIUM AZIDE; 90% H2O/10% D2O; REMARK 210 1MM [U-99% 13C; U-99% 15N] BLM REMARK 210 HRDC DOMAIN; 1MM DTT; 20MM HEPES; REMARK 210 100MM SODIUM CHLORIDE; 0.02% REMARK 210 SODIUM AZIDE; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HCCH-TOCSY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D C(CO)NH; 3D H(CCCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 44 77.74 51.72 REMARK 500 1 ASP A 47 105.67 -45.53 REMARK 500 2 LEU A 44 78.11 50.70 REMARK 500 2 ASP A 47 105.62 -45.98 REMARK 500 2 SER A 81 71.94 58.37 REMARK 500 2 PRO A 82 -171.50 -69.82 REMARK 500 3 LEU A 44 87.57 51.61 REMARK 500 3 SER A 45 135.29 -172.74 REMARK 500 3 ASP A 47 106.42 -47.01 REMARK 500 3 PRO A 82 -178.21 -69.75 REMARK 500 4 LEU A 44 75.44 51.60 REMARK 500 4 ASP A 47 107.76 -49.07 REMARK 500 4 SER A 81 72.47 -175.95 REMARK 500 4 PRO A 82 -172.18 -69.72 REMARK 500 5 LEU A 44 79.09 51.04 REMARK 500 5 ASP A 47 107.11 -47.66 REMARK 500 5 PRO A 82 -173.35 -69.74 REMARK 500 6 LEU A 44 86.51 50.06 REMARK 500 6 SER A 45 137.43 -179.74 REMARK 500 6 ASP A 47 105.30 -45.20 REMARK 500 6 GLU A 78 -71.56 -59.15 REMARK 500 6 TRP A 79 121.89 -174.99 REMARK 500 6 SER A 81 71.52 53.35 REMARK 500 7 LEU A 44 74.10 51.26 REMARK 500 7 ASP A 47 107.83 -49.35 REMARK 500 7 ALA A 83 120.60 -170.25 REMARK 500 8 LEU A 44 85.78 50.39 REMARK 500 8 SER A 45 124.53 -170.98 REMARK 500 8 ASP A 47 105.60 -45.39 REMARK 500 8 SER A 81 69.52 -156.11 REMARK 500 9 LEU A 44 87.00 49.91 REMARK 500 9 SER A 45 142.43 -178.30 REMARK 500 9 ASP A 47 105.68 -46.02 REMARK 500 9 THR A 80 90.35 -66.26 REMARK 500 10 LEU A 44 87.02 49.66 REMARK 500 10 SER A 45 127.87 -177.54 REMARK 500 10 ASP A 47 106.29 -46.66 REMARK 500 11 ASP A 47 105.85 -45.64 REMARK 500 11 THR A 80 94.14 -160.93 REMARK 500 12 ASP A 47 105.82 -45.93 REMARK 500 13 LEU A 44 77.72 49.25 REMARK 500 13 ASP A 47 106.01 -46.26 REMARK 500 13 TRP A 79 -61.11 -120.44 REMARK 500 14 LEU A 44 78.18 50.96 REMARK 500 14 ASP A 47 106.50 -46.52 REMARK 500 14 SER A 81 68.36 63.28 REMARK 500 14 ALA A 83 101.83 -58.50 REMARK 500 15 LEU A 44 80.51 51.63 REMARK 500 15 ASP A 47 106.35 -46.88 REMARK 500 15 PRO A 82 -172.83 -69.74 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16766 RELATED DB: BMRB DBREF 2KV2 A 1 85 UNP P54132 BLM_HUMAN 1210 1294 SEQRES 1 A 85 GLN ARG GLU GLU MET VAL LYS LYS CYS LEU GLY GLU LEU SEQRES 2 A 85 THR GLU VAL CYS LYS SER LEU GLY LYS VAL PHE GLY VAL SEQRES 3 A 85 HIS TYR PHE ASN ILE PHE ASN THR VAL THR LEU LYS LYS SEQRES 4 A 85 LEU ALA GLU SER LEU SER SER ASP PRO GLU VAL LEU LEU SEQRES 5 A 85 GLN ILE ASP GLY VAL THR GLU ASP LYS LEU GLU LYS TYR SEQRES 6 A 85 GLY ALA GLU VAL ILE SER VAL LEU GLN LYS TYR SER GLU SEQRES 7 A 85 TRP THR SER PRO ALA GLU ASP HELIX 1 1 GLN A 1 GLY A 25 1 25 HELIX 2 2 HIS A 27 PHE A 32 1 6 HELIX 3 3 ASN A 33 LEU A 44 1 12 HELIX 4 4 ASP A 47 GLN A 53 1 7 HELIX 5 5 THR A 58 TYR A 65 1 8 HELIX 6 6 TYR A 65 THR A 80 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1