HEADER PROTEIN TRANSPORT 09-MAR-10 2KV7 TITLE NMR SOLUTION STRUCTURE OF A SOLUBLE PRGI MUTANT FROM SALMONELLA TITLE 2 TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PRGI; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 216597; SOURCE 4 STRAIN: SL1344; SOURCE 5 VARIANT: ENTERICA SEROVAR; SOURCE 6 GENE: PRGI, STM2873; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS PRGI, BACTERIAL PATHOGENESIS, TYPE THREE SECRETION NEEDLE, PROTEIN KEYWDS 2 TRANSPORT, NEEDLE PROTOMER, TRANSPORT, VIRULENCE EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR H.SCHMIDT,O.POYRAZ,K.SEIDEL,F.DELISSEN,C.ADER,H.TENENBOIM,C.GOOSMANN, AUTHOR 2 B.LAUBE,A.F.THUENEMANN,A.ZYCHLINSKI,M.BALDUS,A.LANGE,C.GRIESINGER, AUTHOR 3 M.KOLBE REVDAT 3 01-MAY-24 2KV7 1 REMARK REVDAT 2 18-DEC-19 2KV7 1 JRNL REMARK SEQADV REVDAT 1 16-JUN-10 2KV7 0 JRNL AUTH O.POYRAZ,H.SCHMIDT,K.SEIDEL,F.DELISSEN,C.ADER,H.TENENBOIM, JRNL AUTH 2 C.GOOSMANN,B.LAUBE,A.F.THUNEMANN,A.ZYCHLINSKY,M.BALDUS, JRNL AUTH 3 A.LANGE,C.GRIESINGER,M.KOLBE JRNL TITL PROTEIN REFOLDING IS REQUIRED FOR ASSEMBLY OF THE TYPE THREE JRNL TITL 2 SECRETION NEEDLE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 788 2010 JRNL REFN ESSN 1545-9985 JRNL PMID 20543831 JRNL DOI 10.1038/NSMB.1822 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH SIMULATED ANNEALING USING 36 REMARK 3 RDCS REMARK 4 REMARK 4 2KV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000101613. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 15N] PRGI*-1, 93% REMARK 210 H2O/7% D2O; 0.3 MM [U-100% 13C; REMARK 210 U-100% 15N] PRGI*-2, 93% H2O/7% REMARK 210 D2O; 0.3 MM [U-100% 15N] PRGI*-3, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 2D 1H-15N TROSY; 2D REMARK 210 1H-15N COCAINE REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 700 MHZ; 600 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ATNOSCANDID, CARA, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 4 70.32 52.86 REMARK 500 1 ALA A 5 72.53 -169.09 REMARK 500 1 TRP A 8 38.98 32.93 REMARK 500 1 SER A 9 -86.89 -99.38 REMARK 500 1 ASP A 13 -39.15 -169.06 REMARK 500 1 ASP A 14 -79.26 -53.76 REMARK 500 1 PHE A 19 -71.10 -88.28 REMARK 500 1 ASP A 20 -81.28 -56.03 REMARK 500 1 PRO A 41 -163.52 -59.45 REMARK 500 1 SER A 42 92.36 -53.00 REMARK 500 1 PHE A 82 -17.91 63.85 REMARK 500 2 SER A 2 78.89 -167.58 REMARK 500 2 MET A 4 70.98 52.59 REMARK 500 2 ALA A 5 82.25 -169.16 REMARK 500 2 TRP A 8 39.73 32.73 REMARK 500 2 SER A 9 -85.76 -132.61 REMARK 500 2 ASP A 13 -39.25 -169.37 REMARK 500 2 ASP A 14 -79.75 -53.31 REMARK 500 2 PHE A 19 -61.64 -90.25 REMARK 500 2 ASP A 20 -74.08 -69.82 REMARK 500 2 PRO A 41 -163.63 -59.46 REMARK 500 2 SER A 42 92.41 -53.13 REMARK 500 2 PHE A 82 -18.12 63.93 REMARK 500 3 MET A 4 85.41 52.04 REMARK 500 3 TRP A 8 50.63 33.35 REMARK 500 3 SER A 9 -85.29 -141.14 REMARK 500 3 ASP A 13 -39.42 -168.54 REMARK 500 3 ASP A 14 -79.39 -53.70 REMARK 500 3 PHE A 19 -60.58 -95.73 REMARK 500 3 ASP A 20 -72.87 -69.99 REMARK 500 3 PRO A 41 -163.79 -58.49 REMARK 500 3 SER A 42 92.38 -52.77 REMARK 500 3 PHE A 82 -18.02 63.82 REMARK 500 4 MET A 4 80.23 52.32 REMARK 500 4 ALA A 5 105.14 -167.55 REMARK 500 4 TRP A 8 39.82 32.34 REMARK 500 4 SER A 9 -86.25 -141.82 REMARK 500 4 ASP A 13 -39.18 -169.84 REMARK 500 4 ASP A 14 -79.73 -53.71 REMARK 500 4 PHE A 19 -61.06 -94.30 REMARK 500 4 ASP A 20 -73.85 -69.56 REMARK 500 4 PRO A 41 -163.77 -58.49 REMARK 500 4 SER A 42 92.30 -53.02 REMARK 500 4 PHE A 82 -18.42 64.29 REMARK 500 5 MET A 4 71.79 52.72 REMARK 500 5 ALA A 5 91.03 -168.87 REMARK 500 5 TRP A 8 38.76 33.24 REMARK 500 5 SER A 9 -86.33 -131.74 REMARK 500 5 ASP A 13 -39.28 -168.36 REMARK 500 5 ASP A 14 -79.14 -53.69 REMARK 500 REMARK 500 THIS ENTRY HAS 284 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16770 RELATED DB: BMRB DBREF 2KV7 A 4 83 UNP P41784 PRGI_SALTY 1 80 SEQADV 2KV7 GLY A 1 UNP P41784 EXPRESSION TAG SEQADV 2KV7 SER A 2 UNP P41784 EXPRESSION TAG SEQADV 2KV7 HIS A 3 UNP P41784 EXPRESSION TAG SEQADV 2KV7 ALA A 68 UNP P41784 VAL 65 ENGINEERED MUTATION SEQADV 2KV7 ALA A 70 UNP P41784 VAL 67 ENGINEERED MUTATION SEQRES 1 A 83 GLY SER HIS MET ALA THR PRO TRP SER GLY TYR LEU ASP SEQRES 2 A 83 ASP VAL SER ALA LYS PHE ASP THR GLY VAL ASP ASN LEU SEQRES 3 A 83 GLN THR GLN VAL THR GLU ALA LEU ASP LYS LEU ALA ALA SEQRES 4 A 83 LYS PRO SER ASP PRO ALA LEU LEU ALA ALA TYR GLN SER SEQRES 5 A 83 LYS LEU SER GLU TYR ASN LEU TYR ARG ASN ALA GLN SER SEQRES 6 A 83 ASN THR ALA LYS ALA PHE LYS ASP ILE ASP ALA ALA ILE SEQRES 7 A 83 ILE GLN ASN PHE ARG HELIX 1 1 ASP A 13 ALA A 38 1 26 HELIX 2 2 ASP A 43 ASN A 81 1 39 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1