HEADER TRANSCRIPTION 15-MAR-10 2KVH TITLE STRUCTURE OF THE THREE-CYS2HIS2 DOMAIN OF MOUSE TESTIS ZINC FINGER TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 32; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MTZD_FINGER2, C2H2-TYPE 2 DOMAIN, UNP RESIDUES 375-401; COMPND 5 SYNONYM: REPRESSOR OF GATA, TESTIS ZINC FINGER PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3)PLACI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETBLUE-1 KEYWDS PROTEIN/DNA, METAL-BINDING, TRANSCRIPTION, ZINC-FINGER EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR C.-C.CHOU,Y.-C.LOU,C.CHEN REVDAT 2 25-DEC-19 2KVH 1 JRNL REMARK REVDAT 1 14-APR-10 2KVH 0 JRNL AUTH C.-C.CHOU,Y.-C.LOU,T.K.TANG,C.CHEN JRNL TITL STRUCTURE AND DNA BINDING CHARACTERISTICS OF THE JRNL TITL 2 THREE-CYS(2)HIS(2) DOMAIN OF MOUSE TESTIS ZINC FINGER JRNL TITL 3 PROTEIN. JRNL REF PROTEINS V. 78 2202 2010 JRNL REFN ESSN 1097-0134 JRNL PMID 20544958 JRNL DOI 10.1002/PROT.22732 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.18, X-PLOR NIH 2.18 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000101623. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM [U-99% 2H] ACETIC ACID-1, REMARK 210 20 MM SODIUM CHLORIDE-2, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5, NMRPIPE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 31 -161.73 -46.81 REMARK 500 1 SER A 35 -64.30 -90.73 REMARK 500 1 CYS A 37 129.90 150.71 REMARK 500 1 HIS A 54 -75.47 -34.88 REMARK 500 2 PRO A 31 -161.32 -78.12 REMARK 500 2 PHE A 32 71.14 -152.32 REMARK 500 2 SER A 35 -82.68 -84.85 REMARK 500 2 CYS A 37 86.30 153.68 REMARK 500 2 PRO A 38 78.66 -45.05 REMARK 500 2 HIS A 54 -82.25 -33.00 REMARK 500 3 SER A 35 -74.48 -80.52 REMARK 500 3 CYS A 37 93.58 154.54 REMARK 500 3 PRO A 38 79.41 -48.39 REMARK 500 4 SER A 35 -70.57 -87.34 REMARK 500 4 CYS A 37 103.45 152.93 REMARK 500 4 PRO A 38 79.51 -46.30 REMARK 500 4 HIS A 54 119.36 -38.31 REMARK 500 5 PRO A 31 -99.35 -77.07 REMARK 500 5 SER A 35 -77.29 -88.55 REMARK 500 5 CYS A 37 93.23 154.96 REMARK 500 5 PRO A 38 79.84 -47.39 REMARK 500 5 PHE A 44 -35.55 -38.19 REMARK 500 5 HIS A 54 102.29 -34.36 REMARK 500 6 PHE A 32 69.74 -62.65 REMARK 500 6 SER A 35 -63.69 -91.26 REMARK 500 6 CYS A 37 94.34 150.81 REMARK 500 6 PRO A 38 75.92 -47.05 REMARK 500 6 ARG A 42 -49.94 -148.02 REMARK 500 6 HIS A 54 -15.52 -41.37 REMARK 500 7 SER A 35 -72.40 -91.78 REMARK 500 7 CYS A 37 92.10 151.66 REMARK 500 7 PRO A 38 79.40 -46.53 REMARK 500 7 HIS A 54 149.00 -34.15 REMARK 500 8 PRO A 31 5.36 -49.39 REMARK 500 8 PHE A 32 69.25 -110.34 REMARK 500 8 CYS A 37 134.64 150.01 REMARK 500 9 CYS A 37 139.10 152.36 REMARK 500 10 SER A 35 -81.69 -70.26 REMARK 500 10 CYS A 37 94.16 156.82 REMARK 500 10 PRO A 38 79.98 -47.93 REMARK 500 10 HIS A 54 -83.49 -31.51 REMARK 500 11 PRO A 31 87.82 -42.23 REMARK 500 11 CYS A 37 97.13 152.59 REMARK 500 11 PRO A 38 76.75 -48.02 REMARK 500 11 HIS A 54 -30.41 -32.92 REMARK 500 12 CYS A 37 143.76 148.34 REMARK 500 13 SER A 35 -89.16 -82.87 REMARK 500 13 CYS A 37 91.81 158.55 REMARK 500 13 PRO A 38 79.73 -46.80 REMARK 500 13 SER A 41 -167.20 -116.06 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 84 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 50 NE2 REMARK 620 2 HIS A 54 NE2 126.6 REMARK 620 3 CYS A 37 SG 90.2 130.3 REMARK 620 4 CYS A 34 SG 71.2 142.8 74.4 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 84 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16797 RELATED DB: BMRB REMARK 900 RELATED ID: 2KVF RELATED DB: PDB REMARK 900 RELATED ID: 2KVG RELATED DB: PDB DBREF 2KVH A 29 55 UNP Q9JKD9 ZBT32_MOUSE 375 401 SEQRES 1 A 27 GLU LYS PRO PHE SER CYS SER LEU CYS PRO GLN ARG SER SEQRES 2 A 27 ARG ASP PHE SER ALA MET THR LYS HIS LEU ARG THR HIS SEQRES 3 A 27 GLY HET ZN A 84 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 PHE A 44 THR A 53 1 10 SHEET 1 A 2 PHE A 32 SER A 33 0 SHEET 2 A 2 ARG A 40 SER A 41 -1 O SER A 41 N PHE A 32 SSBOND 1 CYS A 34 CYS A 37 1555 1555 2.85 LINK NE2 HIS A 50 ZN ZN A 84 1555 1555 2.05 LINK NE2 HIS A 54 ZN ZN A 84 1555 1555 2.06 LINK SG CYS A 37 ZN ZN A 84 1555 1555 2.35 LINK SG CYS A 34 ZN ZN A 84 1555 1555 2.36 SITE 1 AC1 6 CYS A 34 LEU A 36 CYS A 37 GLN A 39 SITE 2 AC1 6 HIS A 50 HIS A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1