HEADER PROTEIN TRANSPORT 05-APR-10 2KWC TITLE THE NMR STRUCTURE OF THE AUTOPHAGY-RELATED PROTEIN ATG8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATG8, AUTOPHAGY-RELATED UBIQUITIN-LIKE MODIFIER ATG8, COMPND 5 CYTOPLASM TO VACUOLE TARGETING PROTEIN 5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX6P KEYWDS AUTOPHAGY, ATG8, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.KUMETA,M.WATANABE,H.NAKATOGAWA,M.YAMAGUCHI,K.OGURA,W.ADACHI, AUTHOR 2 Y.FUJIOKA,N.N.NODA,Y.OHSUMI,F.INAGAKI REVDAT 6 15-MAY-24 2KWC 1 REMARK REVDAT 5 14-JUN-23 2KWC 1 REMARK REVDAT 4 10-NOV-21 2KWC 1 SEQADV REVDAT 3 26-FEB-20 2KWC 1 REMARK REVDAT 2 30-JUN-10 2KWC 1 JRNL REVDAT 1 12-MAY-10 2KWC 0 JRNL AUTH H.KUMETA,M.WATANABE,H.NAKATOGAWA,M.YAMAGUCHI,K.OGURA, JRNL AUTH 2 W.ADACHI,Y.FUJIOKA,N.N.NODA,Y.OHSUMI,F.INAGAKI JRNL TITL THE NMR STRUCTURE OF THE AUTOPHAGY-RELATED PROTEIN ATG8 JRNL REF J.BIOMOL.NMR V. 47 237 2010 JRNL REFN ISSN 0925-2738 JRNL PMID 20428927 JRNL DOI 10.1007/S10858-010-9420-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000101654. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 170 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM [U-99% 13C; U-99% 15N] REMARK 210 ATG8 K26P; 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HN(CO)CA; 3D HNCA; REMARK 210 3D HBHA(CO)NH; 3D HN(CA)HA; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 2D HBCBCGCDHD; 2D REMARK 210 HBCBCGCDCEHE; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 5.0, TALOS REMARK 210 2007.068.09.07, SPARKY 3.113, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 39 176.68 -50.72 REMARK 500 1 GLU A 43 170.88 -53.93 REMARK 500 1 PHE A 104 177.95 -51.84 REMARK 500 2 PHE A 5 -30.76 -37.79 REMARK 500 2 GLU A 17 -30.08 -39.04 REMARK 500 2 SER A 39 177.59 -54.61 REMARK 500 2 MET A 69 54.13 39.61 REMARK 500 2 PHE A 104 175.01 -47.17 REMARK 500 3 SER A 7 -67.29 -102.44 REMARK 500 3 GLU A 8 -35.60 -38.92 REMARK 500 3 PHE A 11 -72.00 -64.92 REMARK 500 3 GLU A 12 -33.30 -38.98 REMARK 500 3 LYS A 13 -70.77 -71.16 REMARK 500 3 ARG A 24 -64.91 -100.74 REMARK 500 3 SER A 39 -176.45 -64.29 REMARK 500 3 PHE A 104 175.54 -48.03 REMARK 500 4 SER A 39 179.07 -58.18 REMARK 500 4 GLU A 43 170.93 -54.38 REMARK 500 4 PHE A 104 170.88 -58.61 REMARK 500 4 SER A 110 134.76 -170.63 REMARK 500 5 SER A 7 -63.57 -100.48 REMARK 500 5 GLU A 8 -34.19 -38.97 REMARK 500 5 SER A 39 169.07 -48.81 REMARK 500 5 PHE A 104 172.43 -45.95 REMARK 500 6 PHE A 5 -30.88 -37.56 REMARK 500 6 SER A 39 -179.57 -59.41 REMARK 500 6 GLU A 43 170.93 -57.29 REMARK 500 6 PHE A 104 177.53 -50.70 REMARK 500 6 ASN A 113 46.00 -91.54 REMARK 500 7 PHE A 25 78.95 -118.49 REMARK 500 7 SER A 39 174.67 -55.04 REMARK 500 7 PHE A 104 177.47 -48.25 REMARK 500 7 ASN A 113 45.07 -89.25 REMARK 500 8 LYS A 2 -78.81 -72.31 REMARK 500 8 LYS A 13 -71.03 -42.51 REMARK 500 8 ARG A 24 -61.04 -108.23 REMARK 500 8 ASN A 113 45.98 -90.71 REMARK 500 9 SER A 7 -67.50 -95.59 REMARK 500 9 LYS A 13 -70.88 -67.19 REMARK 500 9 SER A 39 176.40 -48.72 REMARK 500 9 GLU A 43 171.01 -59.91 REMARK 500 9 PHE A 104 175.15 -49.37 REMARK 500 10 PHE A 5 -78.13 -63.99 REMARK 500 10 ARG A 24 -62.10 -97.31 REMARK 500 10 SER A 39 158.56 -49.01 REMARK 500 10 PHE A 104 177.43 -49.27 REMARK 500 11 SER A 39 161.64 -49.30 REMARK 500 11 GLU A 43 170.88 -54.05 REMARK 500 12 SER A 39 157.77 -39.64 REMARK 500 12 LYS A 74 177.98 -53.40 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16835 RELATED DB: BMRB DBREF 2KWC A 1 116 UNP P38182 ATG8_YEAST 1 116 SEQADV 2KWC PRO A 26 UNP P38182 LYS 26 ENGINEERED MUTATION SEQRES 1 A 116 MET LYS SER THR PHE LYS SER GLU TYR PRO PHE GLU LYS SEQRES 2 A 116 ARG LYS ALA GLU SER GLU ARG ILE ALA ASP ARG PHE PRO SEQRES 3 A 116 ASN ARG ILE PRO VAL ILE CYS GLU LYS ALA GLU LYS SER SEQRES 4 A 116 ASP ILE PRO GLU ILE ASP LYS ARG LYS TYR LEU VAL PRO SEQRES 5 A 116 ALA ASP LEU THR VAL GLY GLN PHE VAL TYR VAL ILE ARG SEQRES 6 A 116 LYS ARG ILE MET LEU PRO PRO GLU LYS ALA ILE PHE ILE SEQRES 7 A 116 PHE VAL ASN ASP THR LEU PRO PRO THR ALA ALA LEU MET SEQRES 8 A 116 SER ALA ILE TYR GLN GLU HIS LYS ASP LYS ASP GLY PHE SEQRES 9 A 116 LEU TYR VAL THR TYR SER GLY GLU ASN THR PHE GLY HELIX 1 1 PRO A 10 PHE A 25 1 16 HELIX 2 2 THR A 56 ILE A 68 1 13 HELIX 3 3 LEU A 90 LYS A 99 1 10 SHEET 1 A 4 TYR A 49 PRO A 52 0 SHEET 2 A 4 ARG A 28 CYS A 33 -1 N VAL A 31 O TYR A 49 SHEET 3 A 4 LEU A 105 SER A 110 1 O VAL A 107 N ILE A 32 SHEET 4 A 4 PHE A 77 VAL A 80 -1 N PHE A 79 O THR A 108 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1