data_2KWG # _entry.id 2KWG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KWG pdb_00002kwg 10.2210/pdb2kwg/pdb RCSB RCSB101658 ? ? WWPDB D_1000101658 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KWG _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-04-09 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Podbevsek, P.' 1 'Bhat, B.' 2 'Plavec, J.' 3 # _citation.id primary _citation.title ;Solution-state structure of a fully alternately 2'-F/2'-OMe modified 42-nt dimeric siRNA construct. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 38 _citation.page_first 7298 _citation.page_last 7307 _citation.year 2010 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20624819 _citation.pdbx_database_id_DOI 10.1093/nar/gkq621 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Podbevsek, P.' 1 ? primary 'Allerson, C.R.' 2 ? primary 'Bhat, B.' 3 ? primary 'Plavec, J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;5'-R(*(GF2)P*(OMG)P*(GF2)P*(OMU)P*(AF2)P*(A2M)P*(AF2)P*(OMU)P*(AF2)P*(OMC)P*(AF2)P*(OMU)P*(UFT)P*(OMC)P*(UFT)P*(OMU)P*(CFZ)P*(A2M)P*(UFT)P*(OMU)P*(UFT))-3' ; 6799.100 1 ? ? ? ? 2 polymer syn ;5'-R(P*(A2M)P*(UFT)P*(OMG)P*(AF2)P*(A2M)P*(GF2)P*(A2M)P*(AF2)P*(OMU)P*(GF2)P*(OMU)P*(AF2)P*(OMU)P*(UFT)P*(OMU)P*(AF2)P*(OMC)P*(CFZ)P*(OMC)P*(UFT)P*(OMU))-3' ; 6834.176 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes ;(GF2)(OMG)(GF2)(OMU)(AF2)(A2M)(AF2)(OMU)(AF2)(OMC)(AF2)(OMU)(UFT)(OMC)(UFT)(OMU) (CFZ)(A2M)(UFT)(OMU)(UFT) ; XGXUXAXUXCXUUCUUXAUUU A ? 2 polyribonucleotide no yes ;(A2M)(UFT)(OMG)(AF2)(A2M)(GF2)(A2M)(AF2)(OMU)(GF2)(OMU)(AF2)(OMU)(UFT)(OMU)(AF2) (OMC)(CFZ)(OMC)(UFT)(OMU) ; AUGXAXAXUXUXUUUXCXCUU B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GF2 n 1 2 OMG n 1 3 GF2 n 1 4 OMU n 1 5 AF2 n 1 6 A2M n 1 7 AF2 n 1 8 OMU n 1 9 AF2 n 1 10 OMC n 1 11 AF2 n 1 12 OMU n 1 13 UFT n 1 14 OMC n 1 15 UFT n 1 16 OMU n 1 17 CFZ n 1 18 A2M n 1 19 UFT n 1 20 OMU n 1 21 UFT n 2 1 A2M n 2 2 UFT n 2 3 OMG n 2 4 AF2 n 2 5 A2M n 2 6 GF2 n 2 7 A2M n 2 8 AF2 n 2 9 OMU n 2 10 GF2 n 2 11 OMU n 2 12 AF2 n 2 13 OMU n 2 14 UFT n 2 15 OMU n 2 16 AF2 n 2 17 OMC n 2 18 CFZ n 2 19 OMC n 2 20 UFT n 2 21 OMU n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 AF2 'DNA linking' n ;2'-deoxy-2'-fluoroadenosine 5'-(dihydrogen phosphate) ; ? 'C10 H13 F N5 O6 P' 349.212 CFZ 'DNA linking' n ;2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) ; ? 'C9 H13 F N3 O7 P' 325.188 GF2 'DNA linking' n ;2'-deoxy-2'-fluoroguanosine 5'-(dihydrogen phosphate) ; ? 'C10 H13 F N5 O7 P' 365.212 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 UFT 'DNA linking' n ;2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate) ; ? 'C9 H12 F N2 O8 P' 326.172 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GF2 1 1 1 GF2 GF2 A . n A 1 2 OMG 2 2 2 OMG OMG A . n A 1 3 GF2 3 3 3 GF2 GF2 A . n A 1 4 OMU 4 4 4 OMU OMU A . n A 1 5 AF2 5 5 5 AF2 AF2 A . n A 1 6 A2M 6 6 6 A2M A2M A . n A 1 7 AF2 7 7 7 AF2 AF2 A . n A 1 8 OMU 8 8 8 OMU OMU A . n A 1 9 AF2 9 9 9 AF2 AF2 A . n A 1 10 OMC 10 10 10 OMC OMC A . n A 1 11 AF2 11 11 11 AF2 AF2 A . n A 1 12 OMU 12 12 12 OMU OMU A . n A 1 13 UFT 13 13 13 UFT UFT A . n A 1 14 OMC 14 14 14 OMC OMC A . n A 1 15 UFT 15 15 15 UFT UFT A . n A 1 16 OMU 16 16 16 OMU OMU A . n A 1 17 CFZ 17 17 17 CFZ CFZ A . n A 1 18 A2M 18 18 18 A2M A2M A . n A 1 19 UFT 19 19 19 UFT UFT A . n A 1 20 OMU 20 20 20 OMU OMU A . n A 1 21 UFT 21 21 21 UFT UFT A . n B 2 1 A2M 1 22 22 A2M A2M B . n B 2 2 UFT 2 23 23 UFT UFT B . n B 2 3 OMG 3 24 24 OMG OMG B . n B 2 4 AF2 4 25 25 AF2 AF2 B . n B 2 5 A2M 5 26 26 A2M A2M B . n B 2 6 GF2 6 27 27 GF2 GF2 B . n B 2 7 A2M 7 28 28 A2M A2M B . n B 2 8 AF2 8 29 29 AF2 AF2 B . n B 2 9 OMU 9 30 30 OMU OMU B . n B 2 10 GF2 10 31 31 GF2 GF2 B . n B 2 11 OMU 11 32 32 OMU OMU B . n B 2 12 AF2 12 33 33 AF2 AF2 B . n B 2 13 OMU 13 34 34 OMU OMU B . n B 2 14 UFT 14 35 35 UFT UFT B . n B 2 15 OMU 15 36 36 OMU OMU B . n B 2 16 AF2 16 37 37 AF2 AF2 B . n B 2 17 OMC 17 38 38 OMC OMC B . n B 2 18 CFZ 18 39 39 CFZ CFZ B . n B 2 19 OMC 19 40 40 OMC OMC B . n B 2 20 UFT 20 41 41 UFT UFT B . n B 2 21 OMU 21 42 42 OMU OMU B . n # _cell.entry_id 2KWG _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KWG _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KWG _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KWG _struct.title ;Solution structure of a fully modified 2'-F/2'-OMe siRNA construct ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KWG _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;siRNA, 2'-fluoro, 2'-O-methyl, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2KWG 2KWG 1 ? ? ? 2 PDB 2KWG 2KWG 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KWG A 1 ? 21 ? 2KWG 1 ? 21 ? 1 21 2 2 2KWG B 1 ? 21 ? 2KWG 22 ? 42 ? 22 42 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A OMG 2 "O3'" ? ? ? 1_555 A GF2 3 P ? ? A OMG 2 A GF2 3 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? A OMU 4 "O3'" ? ? ? 1_555 A AF2 5 P ? ? A OMU 4 A AF2 5 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale one ? A A2M 6 "O3'" ? ? ? 1_555 A AF2 7 P ? ? A A2M 6 A AF2 7 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale4 covale both ? A OMU 8 "O3'" ? ? ? 1_555 A AF2 9 P ? ? A OMU 8 A AF2 9 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale5 covale both ? A OMC 10 "O3'" ? ? ? 1_555 A AF2 11 P ? ? A OMC 10 A AF2 11 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale6 covale both ? A OMU 12 "O3'" ? ? ? 1_555 A UFT 13 P ? ? A OMU 12 A UFT 13 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale7 covale both ? A UFT 13 "O3'" ? ? ? 1_555 A OMC 14 P ? ? A UFT 13 A OMC 14 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale8 covale both ? A OMC 14 "O3'" ? ? ? 1_555 A UFT 15 P ? ? A OMC 14 A UFT 15 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale9 covale both ? A UFT 15 "O3'" ? ? ? 1_555 A OMU 16 P ? ? A UFT 15 A OMU 16 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale10 covale both ? A OMU 16 "O3'" ? ? ? 1_555 A CFZ 17 P ? ? A OMU 16 A CFZ 17 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale11 covale both ? A CFZ 17 "O3'" ? ? ? 1_555 A A2M 18 P ? ? A CFZ 17 A A2M 18 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale12 covale one ? A A2M 18 "O3'" ? ? ? 1_555 A UFT 19 P ? ? A A2M 18 A UFT 19 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale13 covale both ? A UFT 19 "O3'" ? ? ? 1_555 A OMU 20 P ? ? A UFT 19 A OMU 20 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale14 covale both ? A OMU 20 "O3'" ? ? ? 1_555 A UFT 21 P ? ? A OMU 20 A UFT 21 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale15 covale one ? B A2M 1 "O3'" ? ? ? 1_555 B UFT 2 P ? ? B A2M 22 B UFT 23 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale16 covale both ? B UFT 2 "O3'" ? ? ? 1_555 B OMG 3 P ? ? B UFT 23 B OMG 24 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale17 covale both ? B OMG 3 "O3'" ? ? ? 1_555 B AF2 4 P ? ? B OMG 24 B AF2 25 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale18 covale one ? B A2M 5 "O3'" ? ? ? 1_555 B GF2 6 P ? ? B A2M 26 B GF2 27 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale19 covale one ? B A2M 7 "O3'" ? ? ? 1_555 B AF2 8 P ? ? B A2M 28 B AF2 29 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale20 covale both ? B OMU 9 "O3'" ? ? ? 1_555 B GF2 10 P ? ? B OMU 30 B GF2 31 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale21 covale both ? B OMU 11 "O3'" ? ? ? 1_555 B AF2 12 P ? ? B OMU 32 B AF2 33 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale22 covale both ? B OMU 13 "O3'" ? ? ? 1_555 B UFT 14 P ? ? B OMU 34 B UFT 35 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale23 covale both ? B UFT 14 "O3'" ? ? ? 1_555 B OMU 15 P ? ? B UFT 35 B OMU 36 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale24 covale both ? B OMU 15 "O3'" ? ? ? 1_555 B AF2 16 P ? ? B OMU 36 B AF2 37 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale25 covale both ? B OMC 17 "O3'" ? ? ? 1_555 B CFZ 18 P ? ? B OMC 38 B CFZ 39 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale26 covale both ? B CFZ 18 "O3'" ? ? ? 1_555 B OMC 19 P ? ? B CFZ 39 B OMC 40 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale27 covale both ? B OMC 19 "O3'" ? ? ? 1_555 B UFT 20 P ? ? B OMC 40 B UFT 41 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale28 covale both ? B UFT 20 "O3'" ? ? ? 1_555 B OMU 21 P ? ? B UFT 41 B OMU 42 1_555 ? ? ? ? ? ? ? 1.596 ? ? hydrog1 hydrog ? ? A A2M 6 N1 ? ? ? 1_555 B UFT 14 N3 ? ? A A2M 6 B UFT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A2M 6 N6 ? ? ? 1_555 B UFT 14 O4 ? ? A A2M 6 B UFT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A UFT 13 N3 ? ? ? 1_555 B A2M 7 N1 ? ? A UFT 13 B A2M 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A UFT 13 O4 ? ? ? 1_555 B A2M 7 N6 ? ? A UFT 13 B A2M 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A UFT 15 N3 ? ? ? 1_555 B A2M 5 N1 ? ? A UFT 15 B A2M 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A UFT 15 O4 ? ? ? 1_555 B A2M 5 N6 ? ? A UFT 15 B A2M 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A2M 18 N1 ? ? ? 1_555 B UFT 2 N3 ? ? A A2M 18 B UFT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A2M 18 N6 ? ? ? 1_555 B UFT 2 O4 ? ? A A2M 18 B UFT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A UFT 19 N3 ? ? ? 1_555 B A2M 1 N1 ? ? A UFT 19 B A2M 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A UFT 19 O4 ? ? ? 1_555 B A2M 1 N6 ? ? A UFT 19 B A2M 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 10 _pdbx_validate_close_contact.auth_atom_id_1 "HO5'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GF2 _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 OMG _pdbx_validate_close_contact.auth_seq_id_2 2 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.48 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C4'" ? B A2M 22 ? 'WRONG HAND' . 2 1 "C3'" ? B A2M 22 ? 'WRONG HAND' . 3 2 "C4'" ? B UFT 23 ? 'WRONG HAND' . 4 3 "C4'" ? B A2M 22 ? 'WRONG HAND' . 5 3 "C3'" ? B A2M 22 ? 'WRONG HAND' . 6 4 "C4'" ? B A2M 22 ? 'WRONG HAND' . 7 5 "C4'" ? B A2M 22 ? 'WRONG HAND' . 8 5 "C3'" ? B A2M 22 ? 'WRONG HAND' . 9 5 "C4'" ? B UFT 23 ? 'WRONG HAND' . 10 6 "C3'" ? B A2M 22 ? 'WRONG HAND' . 11 8 "C4'" ? B A2M 22 ? 'WRONG HAND' . 12 8 "C3'" ? B A2M 22 ? 'WRONG HAND' . 13 9 "C4'" ? B A2M 22 ? 'WRONG HAND' . 14 9 "C3'" ? B A2M 22 ? 'WRONG HAND' . 15 10 "C4'" ? B A2M 22 ? 'WRONG HAND' . 16 10 "C3'" ? B A2M 22 ? 'WRONG HAND' . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GF2 1 A GF2 1 ? DG ? 2 A OMG 2 A OMG 2 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 3 A GF2 3 A GF2 3 ? DG ? 4 A OMU 4 A OMU 4 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 5 A AF2 5 A AF2 5 ? DA ? 6 A A2M 6 A A2M 6 ? A ? 7 A AF2 7 A AF2 7 ? DA ? 8 A OMU 8 A OMU 8 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 9 A AF2 9 A AF2 9 ? DA ? 10 A OMC 10 A OMC 10 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 11 A AF2 11 A AF2 11 ? DA ? 12 A OMU 12 A OMU 12 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 13 A UFT 13 A UFT 13 ? DU ? 14 A OMC 14 A OMC 14 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 15 A UFT 15 A UFT 15 ? DU ? 16 A OMU 16 A OMU 16 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 17 A CFZ 17 A CFZ 17 ? DC ? 18 A A2M 18 A A2M 18 ? A ? 19 A UFT 19 A UFT 19 ? DU ? 20 A OMU 20 A OMU 20 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 21 A UFT 21 A UFT 21 ? DU ? 22 B A2M 1 B A2M 22 ? A ? 23 B UFT 2 B UFT 23 ? DU ? 24 B OMG 3 B OMG 24 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 25 B AF2 4 B AF2 25 ? DA ? 26 B A2M 5 B A2M 26 ? A ? 27 B GF2 6 B GF2 27 ? DG ? 28 B A2M 7 B A2M 28 ? A ? 29 B AF2 8 B AF2 29 ? DA ? 30 B OMU 9 B OMU 30 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 31 B GF2 10 B GF2 31 ? DG ? 32 B OMU 11 B OMU 32 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 33 B AF2 12 B AF2 33 ? DA ? 34 B OMU 13 B OMU 34 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 35 B UFT 14 B UFT 35 ? DU ? 36 B OMU 15 B OMU 36 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 37 B AF2 16 B AF2 37 ? DA ? 38 B OMC 17 B OMC 38 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 39 B CFZ 18 B CFZ 39 ? DC ? 40 B OMC 19 B OMC 40 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 41 B UFT 20 B UFT 41 ? DU ? 42 B OMU 21 B OMU 42 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KWG _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KWG _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '2 mM RNA-1, 2 mM RNA-2, 100% D2O' 1 '100% D2O' '2 mM RNA-1, 2 mM RNA-2, 95% H2O/5% D2O' 2 '95% H2O/5% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ISIS401156-1 2 ? mM ? 1 ISIS401157-2 2 ? mM ? 1 ISIS401156-3 2 ? mM ? 2 ISIS401157-4 2 ? mM ? 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 20 6.8 ambient ? 25 K 2 20 6.8 ambient ? 5 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H NOESY' 1 3 2 '2D 1H-1H NOESY' 2 4 1 '2D 1H-1H NOESY' 2 5 2 '2D 1H-1H NOESY' 1 6 1 '2D HP-COSY' 1 7 1 '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KWG _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count 33 _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count 33 _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count 42 _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count 42 _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count 33 _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count 67 _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total ? _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2KWG _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details '100 ps of NMR restrained simulated annealing calculations using a generalized Born implicit solvation model.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'chemical shift assignment' Sparky 3.115 1 Varian collection VnmrJ 2.2C 2 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'structure solution' Amber 9 3 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' refinement Amber 9 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2M P P N N 1 A2M OP1 O N N 2 A2M OP3 O N N 3 A2M "O5'" O N N 4 A2M "C5'" C N N 5 A2M "C4'" C N R 6 A2M "O4'" O N N 7 A2M "C3'" C N R 8 A2M "O3'" O N N 9 A2M "C2'" C N R 10 A2M "O2'" O N N 11 A2M "C1'" C N R 12 A2M "CM'" C N N 13 A2M N9 N Y N 14 A2M C8 C Y N 15 A2M N7 N Y N 16 A2M C5 C Y N 17 A2M C6 C Y N 18 A2M N6 N N N 19 A2M N1 N Y N 20 A2M C2 C Y N 21 A2M N3 N Y N 22 A2M C4 C Y N 23 A2M HOP3 H N N 24 A2M "H5'" H N N 25 A2M "H5''" H N N 26 A2M "H4'" H N N 27 A2M "H3'" H N N 28 A2M "HO3'" H N N 29 A2M "H2'" H N N 30 A2M "H1'" H N N 31 A2M "HM'1" H N N 32 A2M "HM'2" H N N 33 A2M "HM'3" H N N 34 A2M H8 H N N 35 A2M H61 H N N 36 A2M H62 H N N 37 A2M H2 H N N 38 A2M OP2 O N N 39 A2M HOP2 H N N 40 AF2 F F N N 41 AF2 P P N N 42 AF2 N1 N Y N 43 AF2 C2 C Y N 44 AF2 N3 N Y N 45 AF2 C4 C Y N 46 AF2 C5 C Y N 47 AF2 C6 C Y N 48 AF2 N6 N N N 49 AF2 N7 N Y N 50 AF2 C8 C Y N 51 AF2 N9 N Y N 52 AF2 "C1'" C N R 53 AF2 OP2 O N N 54 AF2 "C2'" C N R 55 AF2 OP1 O N N 56 AF2 "C3'" C N R 57 AF2 "O3'" O N N 58 AF2 "C4'" C N R 59 AF2 "O4'" O N N 60 AF2 "C5'" C N N 61 AF2 "O5'" O N N 62 AF2 H2 H N N 63 AF2 H8 H N N 64 AF2 "H5'" H N N 65 AF2 "H5'A" H N N 66 AF2 "H1'" H N N 67 AF2 "H2'" H N N 68 AF2 "H3'" H N N 69 AF2 "H4'" H N N 70 AF2 HN6 H N N 71 AF2 HN6A H N N 72 AF2 HOP2 H N N 73 AF2 "HO3'" H N N 74 AF2 OP3 O N N 75 AF2 HOP3 H N N 76 CFZ P P N N 77 CFZ N1 N N N 78 CFZ C2 C N N 79 CFZ O2 O N N 80 CFZ N3 N N N 81 CFZ C4 C N N 82 CFZ N4 N N N 83 CFZ C5 C N N 84 CFZ C6 C N N 85 CFZ "C1'" C N R 86 CFZ O1P O N N 87 CFZ "C2'" C N R 88 CFZ "F2'" F N N 89 CFZ O2P O N N 90 CFZ "C3'" C N R 91 CFZ "O3'" O N N 92 CFZ O3P O N N 93 CFZ "C4'" C N R 94 CFZ "O4'" O N N 95 CFZ "C5'" C N N 96 CFZ "O5'" O N N 97 CFZ HN4 H N N 98 CFZ HN4A H N N 99 CFZ H5 H N N 100 CFZ H6 H N N 101 CFZ "H1'" H N N 102 CFZ HO1P H N N 103 CFZ "H2'" H N N 104 CFZ "H3'" H N N 105 CFZ "HO3'" H N N 106 CFZ HO3P H N N 107 CFZ "H4'" H N N 108 CFZ "H5'" H N N 109 CFZ "H5'A" H N N 110 GF2 F F N N 111 GF2 P P N N 112 GF2 N1 N N N 113 GF2 C2 C N N 114 GF2 N2 N N N 115 GF2 N3 N N N 116 GF2 C4 C Y N 117 GF2 C5 C Y N 118 GF2 C6 C N N 119 GF2 O6 O N N 120 GF2 N7 N Y N 121 GF2 C8 C Y N 122 GF2 N9 N Y N 123 GF2 "C1'" C N R 124 GF2 OP2 O N N 125 GF2 "C2'" C N R 126 GF2 OP1 O N N 127 GF2 "C3'" C N R 128 GF2 "O3'" O N N 129 GF2 "C4'" C N R 130 GF2 "O4'" O N N 131 GF2 "C5'" C N N 132 GF2 "O5'" O N N 133 GF2 OP3 O N N 134 GF2 HN1 H N N 135 GF2 HN2 H N N 136 GF2 HN2A H N N 137 GF2 H8 H N N 138 GF2 "H1'" H N N 139 GF2 HOP2 H N N 140 GF2 "H2'" H N N 141 GF2 "H3'" H N N 142 GF2 "HO3'" H N N 143 GF2 "H4'" H N N 144 GF2 "H5'" H N N 145 GF2 "H5'A" H N N 146 GF2 HOP3 H N N 147 OMC N1 N N N 148 OMC C2 C N N 149 OMC N3 N N N 150 OMC C4 C N N 151 OMC C5 C N N 152 OMC C6 C N N 153 OMC O2 O N N 154 OMC N4 N N N 155 OMC "C1'" C N R 156 OMC "C2'" C N R 157 OMC "O2'" O N N 158 OMC CM2 C N N 159 OMC "C3'" C N R 160 OMC "C4'" C N R 161 OMC "O4'" O N N 162 OMC "O3'" O N N 163 OMC "C5'" C N N 164 OMC "O5'" O N N 165 OMC P P N N 166 OMC OP1 O N N 167 OMC OP2 O N N 168 OMC OP3 O N N 169 OMC H5 H N N 170 OMC H6 H N N 171 OMC HN41 H N N 172 OMC HN42 H N N 173 OMC "H1'" H N N 174 OMC "H2'" H N N 175 OMC HM21 H N N 176 OMC HM22 H N N 177 OMC HM23 H N N 178 OMC "H3'" H N N 179 OMC "H4'" H N N 180 OMC "HO3'" H N N 181 OMC "H5'" H N N 182 OMC "H5''" H N N 183 OMC HOP2 H N N 184 OMC HOP3 H N N 185 OMG P P N N 186 OMG OP1 O N N 187 OMG OP2 O N N 188 OMG OP3 O N N 189 OMG "O5'" O N N 190 OMG "C5'" C N N 191 OMG "C4'" C N R 192 OMG "O4'" O N N 193 OMG "C3'" C N R 194 OMG "O3'" O N N 195 OMG "C2'" C N R 196 OMG "O2'" O N N 197 OMG CM2 C N N 198 OMG "C1'" C N R 199 OMG N9 N Y N 200 OMG C8 C Y N 201 OMG N7 N Y N 202 OMG C5 C Y N 203 OMG C6 C N N 204 OMG O6 O N N 205 OMG N1 N N N 206 OMG C2 C N N 207 OMG N2 N N N 208 OMG N3 N N N 209 OMG C4 C Y N 210 OMG HOP2 H N N 211 OMG HOP3 H N N 212 OMG "H5'" H N N 213 OMG "H5''" H N N 214 OMG "H4'" H N N 215 OMG "H3'" H N N 216 OMG "HO3'" H N N 217 OMG "H2'" H N N 218 OMG HM21 H N N 219 OMG HM22 H N N 220 OMG HM23 H N N 221 OMG "H1'" H N N 222 OMG H8 H N N 223 OMG HN1 H N N 224 OMG HN21 H N N 225 OMG HN22 H N N 226 OMU N1 N N N 227 OMU C2 C N N 228 OMU N3 N N N 229 OMU C4 C N N 230 OMU C5 C N N 231 OMU C6 C N N 232 OMU O2 O N N 233 OMU O4 O N N 234 OMU "C1'" C N R 235 OMU "C2'" C N R 236 OMU "O2'" O N N 237 OMU CM2 C N N 238 OMU "C3'" C N R 239 OMU "C4'" C N R 240 OMU "O3'" O N N 241 OMU "O4'" O N N 242 OMU "C5'" C N N 243 OMU "O5'" O N N 244 OMU P P N N 245 OMU OP1 O N N 246 OMU OP2 O N N 247 OMU OP3 O N N 248 OMU HN3 H N N 249 OMU H5 H N N 250 OMU H6 H N N 251 OMU "H1'" H N N 252 OMU "H2'" H N N 253 OMU HM21 H N N 254 OMU HM22 H N N 255 OMU HM23 H N N 256 OMU "H3'" H N N 257 OMU "H4'" H N N 258 OMU "HO3'" H N N 259 OMU "H5'" H N N 260 OMU "H5''" H N N 261 OMU HOP2 H N N 262 OMU HOP3 H N N 263 UFT OP3 O N N 264 UFT P P N N 265 UFT OP1 O N N 266 UFT OP2 O N N 267 UFT "O5'" O N N 268 UFT N1 N N N 269 UFT C6 C N N 270 UFT C2 C N N 271 UFT O2 O N N 272 UFT N3 N N N 273 UFT C4 C N N 274 UFT O4 O N N 275 UFT C5 C N N 276 UFT "F2'" F N N 277 UFT "C2'" C N R 278 UFT "C5'" C N N 279 UFT "C4'" C N R 280 UFT "O4'" O N N 281 UFT "C1'" C N R 282 UFT "C3'" C N R 283 UFT "O3'" O N N 284 UFT HOP3 H N N 285 UFT HOP2 H N N 286 UFT H6 H N N 287 UFT H5 H N N 288 UFT "H2'" H N N 289 UFT "H5'" H N N 290 UFT "H5'A" H N N 291 UFT "H4'" H N N 292 UFT "H1'" H N N 293 UFT "H3'" H N N 294 UFT "HO3'" H N N 295 UFT HN3 H N N 296 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2M P OP1 doub N N 1 A2M P OP3 sing N N 2 A2M P "O5'" sing N N 3 A2M OP3 HOP3 sing N N 4 A2M "O5'" "C5'" sing N N 5 A2M "C5'" "C4'" sing N N 6 A2M "C5'" "H5'" sing N N 7 A2M "C5'" "H5''" sing N N 8 A2M "C4'" "O4'" sing N N 9 A2M "C4'" "C3'" sing N N 10 A2M "C4'" "H4'" sing N N 11 A2M "O4'" "C1'" sing N N 12 A2M "C3'" "O3'" sing N N 13 A2M "C3'" "C2'" sing N N 14 A2M "C3'" "H3'" sing N N 15 A2M "O3'" "HO3'" sing N N 16 A2M "C2'" "O2'" sing N N 17 A2M "C2'" "C1'" sing N N 18 A2M "C2'" "H2'" sing N N 19 A2M "O2'" "CM'" sing N N 20 A2M "C1'" N9 sing N N 21 A2M "C1'" "H1'" sing N N 22 A2M "CM'" "HM'1" sing N N 23 A2M "CM'" "HM'2" sing N N 24 A2M "CM'" "HM'3" sing N N 25 A2M N9 C8 sing Y N 26 A2M N9 C4 sing Y N 27 A2M C8 N7 doub Y N 28 A2M C8 H8 sing N N 29 A2M N7 C5 sing Y N 30 A2M C5 C6 sing Y N 31 A2M C5 C4 doub Y N 32 A2M C6 N6 sing N N 33 A2M C6 N1 doub Y N 34 A2M N6 H61 sing N N 35 A2M N6 H62 sing N N 36 A2M N1 C2 sing Y N 37 A2M C2 N3 doub Y N 38 A2M C2 H2 sing N N 39 A2M N3 C4 sing Y N 40 A2M P OP2 sing N N 41 A2M OP2 HOP2 sing N N 42 AF2 F "C2'" sing N N 43 AF2 P OP1 doub N N 44 AF2 P OP2 sing N N 45 AF2 N1 C6 sing Y N 46 AF2 C2 N1 doub Y N 47 AF2 C2 N3 sing Y N 48 AF2 N3 C4 doub Y N 49 AF2 C4 N9 sing Y N 50 AF2 C4 C5 sing Y N 51 AF2 C5 N7 sing Y N 52 AF2 C6 C5 doub Y N 53 AF2 C6 N6 sing N N 54 AF2 N6 HN6A sing N N 55 AF2 C8 N7 doub Y N 56 AF2 C8 H8 sing N N 57 AF2 N9 C8 sing Y N 58 AF2 "C1'" N9 sing N N 59 AF2 "C1'" "C2'" sing N N 60 AF2 OP2 HOP2 sing N N 61 AF2 "C2'" "H2'" sing N N 62 AF2 "C2'" "C3'" sing N N 63 AF2 "C3'" "H3'" sing N N 64 AF2 "C3'" "O3'" sing N N 65 AF2 "O3'" "HO3'" sing N N 66 AF2 "C4'" "C3'" sing N N 67 AF2 "C4'" "C5'" sing N N 68 AF2 "O4'" "C1'" sing N N 69 AF2 "O4'" "C4'" sing N N 70 AF2 "C5'" "O5'" sing N N 71 AF2 "C5'" "H5'A" sing N N 72 AF2 "O5'" P sing N N 73 AF2 H2 C2 sing N N 74 AF2 "H5'" "C5'" sing N N 75 AF2 "H1'" "C1'" sing N N 76 AF2 "H4'" "C4'" sing N N 77 AF2 HN6 N6 sing N N 78 AF2 P OP3 sing N N 79 AF2 OP3 HOP3 sing N N 80 CFZ O2P P doub N N 81 CFZ P "O5'" sing N N 82 CFZ P O1P sing N N 83 CFZ P O3P sing N N 84 CFZ C6 N1 sing N N 85 CFZ C2 N1 sing N N 86 CFZ N1 "C1'" sing N N 87 CFZ N3 C2 sing N N 88 CFZ C2 O2 doub N N 89 CFZ C4 N3 doub N N 90 CFZ N4 C4 sing N N 91 CFZ C4 C5 sing N N 92 CFZ N4 HN4 sing N N 93 CFZ N4 HN4A sing N N 94 CFZ C5 C6 doub N N 95 CFZ C5 H5 sing N N 96 CFZ C6 H6 sing N N 97 CFZ "C2'" "C1'" sing N N 98 CFZ "C1'" "O4'" sing N N 99 CFZ "C1'" "H1'" sing N N 100 CFZ O1P HO1P sing N N 101 CFZ "C3'" "C2'" sing N N 102 CFZ "C2'" "F2'" sing N N 103 CFZ "C2'" "H2'" sing N N 104 CFZ "C3'" "O3'" sing N N 105 CFZ "C3'" "C4'" sing N N 106 CFZ "C3'" "H3'" sing N N 107 CFZ "O3'" "HO3'" sing N N 108 CFZ O3P HO3P sing N N 109 CFZ "O4'" "C4'" sing N N 110 CFZ "C5'" "C4'" sing N N 111 CFZ "C4'" "H4'" sing N N 112 CFZ "O5'" "C5'" sing N N 113 CFZ "C5'" "H5'" sing N N 114 CFZ "C5'" "H5'A" sing N N 115 GF2 P "O5'" sing N N 116 GF2 N1 C2 sing N N 117 GF2 C2 N3 doub N N 118 GF2 C2 N2 sing N N 119 GF2 C4 N3 sing N N 120 GF2 C5 C4 doub Y N 121 GF2 C6 N1 sing N N 122 GF2 C6 C5 sing N N 123 GF2 O6 C6 doub N N 124 GF2 N7 C5 sing Y N 125 GF2 N7 C8 doub Y N 126 GF2 C8 N9 sing Y N 127 GF2 N9 C4 sing Y N 128 GF2 N9 "C1'" sing N N 129 GF2 "C1'" "O4'" sing N N 130 GF2 OP2 P sing N N 131 GF2 "C2'" F sing N N 132 GF2 "C2'" "C1'" sing N N 133 GF2 OP1 P doub N N 134 GF2 "C3'" "C2'" sing N N 135 GF2 "C3'" "C4'" sing N N 136 GF2 "O3'" "C3'" sing N N 137 GF2 "C4'" "O4'" sing N N 138 GF2 "C5'" "C4'" sing N N 139 GF2 "O5'" "C5'" sing N N 140 GF2 P OP3 sing N N 141 GF2 N1 HN1 sing N N 142 GF2 N2 HN2 sing N N 143 GF2 N2 HN2A sing N N 144 GF2 C8 H8 sing N N 145 GF2 "C1'" "H1'" sing N N 146 GF2 OP2 HOP2 sing N N 147 GF2 "C2'" "H2'" sing N N 148 GF2 "C3'" "H3'" sing N N 149 GF2 "O3'" "HO3'" sing N N 150 GF2 "C4'" "H4'" sing N N 151 GF2 "C5'" "H5'" sing N N 152 GF2 "C5'" "H5'A" sing N N 153 GF2 OP3 HOP3 sing N N 154 OMC N1 C2 sing N N 155 OMC N1 C6 sing N N 156 OMC N1 "C1'" sing N N 157 OMC C2 N3 sing N N 158 OMC C2 O2 doub N N 159 OMC N3 C4 doub N N 160 OMC C4 C5 sing N N 161 OMC C4 N4 sing N N 162 OMC C5 C6 doub N N 163 OMC C5 H5 sing N N 164 OMC C6 H6 sing N N 165 OMC N4 HN41 sing N N 166 OMC N4 HN42 sing N N 167 OMC "C1'" "C2'" sing N N 168 OMC "C1'" "O4'" sing N N 169 OMC "C1'" "H1'" sing N N 170 OMC "C2'" "O2'" sing N N 171 OMC "C2'" "C3'" sing N N 172 OMC "C2'" "H2'" sing N N 173 OMC "O2'" CM2 sing N N 174 OMC CM2 HM21 sing N N 175 OMC CM2 HM22 sing N N 176 OMC CM2 HM23 sing N N 177 OMC "C3'" "C4'" sing N N 178 OMC "C3'" "O3'" sing N N 179 OMC "C3'" "H3'" sing N N 180 OMC "C4'" "O4'" sing N N 181 OMC "C4'" "C5'" sing N N 182 OMC "C4'" "H4'" sing N N 183 OMC "O3'" "HO3'" sing N N 184 OMC "C5'" "O5'" sing N N 185 OMC "C5'" "H5'" sing N N 186 OMC "C5'" "H5''" sing N N 187 OMC "O5'" P sing N N 188 OMC P OP1 doub N N 189 OMC P OP2 sing N N 190 OMC P OP3 sing N N 191 OMC OP2 HOP2 sing N N 192 OMC OP3 HOP3 sing N N 193 OMG P OP1 doub N N 194 OMG P OP2 sing N N 195 OMG P OP3 sing N N 196 OMG P "O5'" sing N N 197 OMG OP2 HOP2 sing N N 198 OMG OP3 HOP3 sing N N 199 OMG "O5'" "C5'" sing N N 200 OMG "C5'" "C4'" sing N N 201 OMG "C5'" "H5'" sing N N 202 OMG "C5'" "H5''" sing N N 203 OMG "C4'" "O4'" sing N N 204 OMG "C4'" "C3'" sing N N 205 OMG "C4'" "H4'" sing N N 206 OMG "O4'" "C1'" sing N N 207 OMG "C3'" "O3'" sing N N 208 OMG "C3'" "C2'" sing N N 209 OMG "C3'" "H3'" sing N N 210 OMG "O3'" "HO3'" sing N N 211 OMG "C2'" "O2'" sing N N 212 OMG "C2'" "C1'" sing N N 213 OMG "C2'" "H2'" sing N N 214 OMG "O2'" CM2 sing N N 215 OMG CM2 HM21 sing N N 216 OMG CM2 HM22 sing N N 217 OMG CM2 HM23 sing N N 218 OMG "C1'" N9 sing N N 219 OMG "C1'" "H1'" sing N N 220 OMG N9 C8 sing Y N 221 OMG N9 C4 sing Y N 222 OMG C8 N7 doub Y N 223 OMG C8 H8 sing N N 224 OMG N7 C5 sing Y N 225 OMG C5 C6 sing N N 226 OMG C5 C4 doub Y N 227 OMG C6 O6 doub N N 228 OMG C6 N1 sing N N 229 OMG N1 C2 sing N N 230 OMG N1 HN1 sing N N 231 OMG C2 N2 sing N N 232 OMG C2 N3 doub N N 233 OMG N2 HN21 sing N N 234 OMG N2 HN22 sing N N 235 OMG N3 C4 sing N N 236 OMU N1 C2 sing N N 237 OMU N1 C6 sing N N 238 OMU N1 "C1'" sing N N 239 OMU C2 N3 sing N N 240 OMU C2 O2 doub N N 241 OMU N3 C4 sing N N 242 OMU N3 HN3 sing N N 243 OMU C4 C5 sing N N 244 OMU C4 O4 doub N N 245 OMU C5 C6 doub N N 246 OMU C5 H5 sing N N 247 OMU C6 H6 sing N N 248 OMU "C1'" "C2'" sing N N 249 OMU "C1'" "O4'" sing N N 250 OMU "C1'" "H1'" sing N N 251 OMU "C2'" "O2'" sing N N 252 OMU "C2'" "C3'" sing N N 253 OMU "C2'" "H2'" sing N N 254 OMU "O2'" CM2 sing N N 255 OMU CM2 HM21 sing N N 256 OMU CM2 HM22 sing N N 257 OMU CM2 HM23 sing N N 258 OMU "C3'" "C4'" sing N N 259 OMU "C3'" "O3'" sing N N 260 OMU "C3'" "H3'" sing N N 261 OMU "C4'" "O4'" sing N N 262 OMU "C4'" "C5'" sing N N 263 OMU "C4'" "H4'" sing N N 264 OMU "O3'" "HO3'" sing N N 265 OMU "C5'" "O5'" sing N N 266 OMU "C5'" "H5'" sing N N 267 OMU "C5'" "H5''" sing N N 268 OMU "O5'" P sing N N 269 OMU P OP1 doub N N 270 OMU P OP2 sing N N 271 OMU P OP3 sing N N 272 OMU OP2 HOP2 sing N N 273 OMU OP3 HOP3 sing N N 274 UFT OP3 P sing N N 275 UFT OP1 P doub N N 276 UFT P OP2 sing N N 277 UFT P "O5'" sing N N 278 UFT OP3 HOP3 sing N N 279 UFT OP2 HOP2 sing N N 280 UFT "O5'" "C5'" sing N N 281 UFT C6 N1 sing N N 282 UFT N1 C2 sing N N 283 UFT N1 "C1'" sing N N 284 UFT C5 C6 doub N N 285 UFT C6 H6 sing N N 286 UFT N3 C2 sing N N 287 UFT C2 O2 doub N N 288 UFT C4 N3 sing N N 289 UFT O4 C4 doub N N 290 UFT C5 C4 sing N N 291 UFT C5 H5 sing N N 292 UFT "C2'" "F2'" sing N N 293 UFT "C3'" "C2'" sing N N 294 UFT "C2'" "C1'" sing N N 295 UFT "C2'" "H2'" sing N N 296 UFT "C5'" "C4'" sing N N 297 UFT "C5'" "H5'" sing N N 298 UFT "C5'" "H5'A" sing N N 299 UFT "C3'" "C4'" sing N N 300 UFT "C4'" "O4'" sing N N 301 UFT "C4'" "H4'" sing N N 302 UFT "O4'" "C1'" sing N N 303 UFT "C1'" "H1'" sing N N 304 UFT "C3'" "O3'" sing N N 305 UFT "C3'" "H3'" sing N N 306 UFT "O3'" "HO3'" sing N N 307 UFT N3 HN3 sing N N 308 # _ndb_struct_conf_na.entry_id 2KWG _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A2M 6 1_555 B UFT 14 1_555 0.089 0.009 0.022 3.244 -6.890 -1.345 1 A_A2M6:UFT35_B A 6 ? B 35 ? 20 1 1 A UFT 13 1_555 B A2M 7 1_555 -0.087 -0.009 0.061 2.866 -6.147 -0.324 2 A_UFT13:A2M28_B A 13 ? B 28 ? 20 1 1 A UFT 15 1_555 B A2M 5 1_555 -0.067 0.034 -0.015 6.196 4.106 -4.280 3 A_UFT15:A2M26_B A 15 ? B 26 ? 20 1 1 A A2M 18 1_555 B UFT 2 1_555 0.222 0.049 0.150 16.562 -7.109 -2.132 4 A_A2M18:UFT23_B A 18 ? B 23 ? 20 1 1 A UFT 19 1_555 B A2M 1 1_555 0.048 -0.025 -0.565 14.423 -12.735 2.864 5 A_UFT19:A2M22_B A 19 ? B 22 ? 20 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 A2M _ndb_struct_na_base_pair_step.i_label_seq_id_1 18 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 B _ndb_struct_na_base_pair_step.j_label_comp_id_1 UFT _ndb_struct_na_base_pair_step.j_label_seq_id_1 2 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 UFT _ndb_struct_na_base_pair_step.i_label_seq_id_2 19 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 B _ndb_struct_na_base_pair_step.j_label_comp_id_2 A2M _ndb_struct_na_base_pair_step.j_label_seq_id_2 1 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift 0.506 _ndb_struct_na_base_pair_step.slide -2.583 _ndb_struct_na_base_pair_step.rise 3.343 _ndb_struct_na_base_pair_step.tilt 1.755 _ndb_struct_na_base_pair_step.roll 7.027 _ndb_struct_na_base_pair_step.twist 25.762 _ndb_struct_na_base_pair_step.x_displacement -7.270 _ndb_struct_na_base_pair_step.y_displacement -0.672 _ndb_struct_na_base_pair_step.helical_rise 2.588 _ndb_struct_na_base_pair_step.inclination 15.378 _ndb_struct_na_base_pair_step.tip -3.841 _ndb_struct_na_base_pair_step.helical_twist 26.745 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_A2M18UFT19:A2M22UFT23_BB _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 18 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 B _ndb_struct_na_base_pair_step.j_auth_seq_id_1 23 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 19 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 B _ndb_struct_na_base_pair_step.j_auth_seq_id_2 22 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Varian 'Uniform NMR System' 1 'Varian Uniform NMR System' 600 Varian 'Uniform NMR System' 2 'Varian Uniform NMR System' # _atom_sites.entry_id 2KWG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H N O P # loop_