HEADER UNKNOWN FUNCTION 22-APR-10 2KX0 TITLE THE SOLUTION STRUCTURE OF UBB+1, FRAMESHIFT MUTANT OF UBIQUITIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBB+1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS UBIQUITIN, E2-25K, FRAME SHIFT MUTANT, ALZHEIMER DISEASE, UNKNOWN KEYWDS 2 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.KO REVDAT 3 14-JUN-23 2KX0 1 REMARK REVDAT 2 26-FEB-20 2KX0 1 REMARK REVDAT 1 08-SEP-10 2KX0 0 JRNL AUTH S.KO JRNL TITL THE SOLUTION STRUCTURE OF UBB+1, FRAMESHIFT MUTANT OF JRNL TITL 2 UBIQUITIN B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.5 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000101678. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 15N] UBB+1-1, 90% REMARK 210 H2O/10% D2O; 1 MM [U-100% 13C] REMARK 210 UBB+1-2, 100% D2O; 1 MM [U-99% REMARK 210 13C; U-99% 15N] UBB+1-3, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.2.5, NMRDRAW, XWINNMR, REMARK 210 NMRPIPE, SPARKY, PROCHECKNMR, REMARK 210 TALOS, AUTOASSIGN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 60 -170.47 -63.86 REMARK 500 1 GLU A 89 116.86 -161.00 REMARK 500 1 PRO A 91 -170.36 -69.79 REMARK 500 1 PRO A 98 -175.13 -69.75 REMARK 500 2 PRO A 5 83.33 -69.80 REMARK 500 2 SER A 73 -175.80 -69.31 REMARK 500 2 ALA A 85 127.27 -174.84 REMARK 500 2 ASP A 90 69.37 -163.46 REMARK 500 2 ASP A 92 -52.28 -124.12 REMARK 500 2 PRO A 98 -171.61 -69.75 REMARK 500 3 ASP A 60 -171.26 -65.90 REMARK 500 3 LEU A 81 -73.96 -69.47 REMARK 500 3 LEU A 87 176.94 -57.92 REMARK 500 3 PRO A 91 -171.24 -69.70 REMARK 500 3 ASP A 95 141.79 -173.55 REMARK 500 3 PRO A 98 96.43 -69.75 REMARK 500 4 PRO A 5 87.33 -69.79 REMARK 500 4 SER A 8 148.49 -175.65 REMARK 500 4 ALA A 85 109.75 -174.75 REMARK 500 4 ASP A 90 70.82 -164.02 REMARK 500 4 PRO A 91 -171.19 -69.76 REMARK 500 4 ASP A 92 101.06 -179.71 REMARK 500 4 PRO A 98 -172.90 -69.76 REMARK 500 5 PRO A 5 91.96 -69.75 REMARK 500 5 SER A 8 139.31 -178.67 REMARK 500 5 TYR A 84 124.59 -174.12 REMARK 500 5 ALA A 85 125.53 -173.72 REMARK 500 5 PRO A 91 -171.26 -69.77 REMARK 500 6 SER A 8 128.05 -179.26 REMARK 500 6 PRO A 91 91.05 -69.74 REMARK 500 6 ASP A 92 -70.85 -67.31 REMARK 500 6 HIS A 97 71.14 56.81 REMARK 500 6 PRO A 98 92.33 -69.81 REMARK 500 7 ASP A 60 -178.00 -58.21 REMARK 500 7 GLN A 70 -168.48 -111.21 REMARK 500 7 PRO A 91 -172.59 -69.70 REMARK 500 7 ASP A 92 90.09 61.84 REMARK 500 8 PRO A 5 -171.08 -69.76 REMARK 500 8 ARG A 6 -70.78 -77.72 REMARK 500 8 ASP A 60 179.40 -58.72 REMARK 500 8 ARG A 82 130.61 -177.86 REMARK 500 8 TYR A 84 -39.91 -175.92 REMARK 500 8 ALA A 85 82.54 -178.31 REMARK 500 8 HIS A 97 74.47 -113.38 REMARK 500 9 SER A 8 146.08 -175.74 REMARK 500 9 ARG A 80 -66.07 -96.63 REMARK 500 9 TYR A 84 142.40 -173.95 REMARK 500 9 ARG A 88 132.05 -174.11 REMARK 500 9 HIS A 97 68.97 -169.94 REMARK 500 10 ASP A 60 177.99 -56.68 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16895 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST IN UNIPROT. THE AUTHOR STATES THAT THE SEQUENCE IS FRAME REMARK 999 SHIFT MUTANT OF UBIQUITIN WHICH OBSERVED IN ALZHEIMER PATIENTS. THE REMARK 999 LAST 20 RESIDUES (Y84-Q103) ARE EXPRESSION TAGS. DBREF 2KX0 A 1 103 PDB 2KX0 2KX0 1 103 SEQRES 1 A 103 GLY SER LEU VAL PRO ARG GLY SER MET GLN ILE PHE VAL SEQRES 2 A 103 LYS THR LEU THR GLY LYS THR ILE THR LEU GLU VAL GLU SEQRES 3 A 103 PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE GLN SEQRES 4 A 103 ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE SEQRES 5 A 103 PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER SEQRES 6 A 103 GLU TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU VAL SEQRES 7 A 103 LEU ARG LEU ARG GLY TYR ALA ASP LEU ARG GLU ASP PRO SEQRES 8 A 103 ASP ARG GLN ASP HIS HIS PRO GLY SER GLY ALA GLN HELIX 1 1 THR A 30 GLU A 42 1 13 SHEET 1 A 5 THR A 20 VAL A 25 0 SHEET 2 A 5 MET A 9 LYS A 14 -1 N ILE A 11 O LEU A 23 SHEET 3 A 5 THR A 74 LEU A 77 1 O LEU A 75 N LYS A 14 SHEET 4 A 5 LEU A 51 PHE A 53 -1 N ILE A 52 O HIS A 76 SHEET 5 A 5 LYS A 56 GLN A 57 -1 O LYS A 56 N PHE A 53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1