HEADER RNA 25-MAY-10 2KYE TITLE SOLUTION STRUCTURE OF THE PSEUDOURIDINE MODIFIED P6.1 HAIRPIN OF HUMAN TITLE 2 TELOMERASE RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*GP*AP*GP*AP*GP*(PSU)P*(PSU)P*GP*GP*GP*CP*(PSU) COMPND 3 P*CP*(PSU)P*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS TELOMERASE, RNA, PSEUDOURIDINE, P6.1, HAIRPIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.-K.KIM,C.A.THEIMER,J.R.MITCHELL,K.COLLINS,J.FEIGON REVDAT 2 05-JAN-11 2KYE 1 JRNL REVDAT 1 30-JUN-10 2KYE 0 JRNL AUTH N.K.KIM,C.A.THEIMER,J.R.MITCHELL,K.COLLINS,J.FEIGON JRNL TITL EFFECT OF PSEUDOURIDYLATION ON THE STRUCTURE AND ACTIVITY OF JRNL TITL 2 THE CATALYTICALLY ESSENTIAL P6.1 HAIRPIN IN HUMAN TELOMERASE JRNL TITL 3 RNA. JRNL REF NUCLEIC ACIDS RES. V. 38 6746 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20554853 JRNL DOI 10.1093/NAR/GKQ525 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.9.8 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KYE COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-10. REMARK 100 THE RCSB ID CODE IS RCSB101728. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 293 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 5; 5 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM RNA (5'-R(*GP*AP*GP*AP* REMARK 210 GP*(PSU)P*(PSU)P*GP*GP*GP*CP*(PSU)P*CP*(PSU)P*C)-3')-1, 95% H2O/ REMARK 210 5% D2O; 0.6 MM RNA (5'-R(*GP*AP*GP*AP*GP*(PSU)P*(PSU)P*GP*GP*GP* REMARK 210 CP*(PSU)P*CP*(PSU)P*C)-3')-2, 100% D2O; 0.8 MM [U-98% 13C; U-98% REMARK 210 15N] RNA (5'-R(*GP*AP*GP*AP*GP*(PSU)P*(PSU)P*GP*GP*GP*CP*(PSU)P* REMARK 210 CP*(PSU)P*C)-3')-3, 95% H2O/5% D2O; 0.8 MM [U-98% 13C; U-98% 15N] REMARK 210 RNA (5'-R(*GP*AP*GP*AP*GP*(PSU)P*(PSU)P*GP*GP*GP*CP*(PSU)P*CP* REMARK 210 (PSU)P*C)-3')-4, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H COSY; 2D 1H-1H NOESY; 3D REMARK 210 HCCH-TOCSY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.9.8, MOLMOL, REMARK 210 XWINNMR, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C A 13 H5' PSU A 14 1.43 REMARK 500 O4 PSU A 6 H1 G A 10 1.67 REMARK 500 OP1 G A 8 H1 G A 9 1.68 REMARK 500 HO2' PSU A 7 O5' G A 8 1.69 REMARK 500 O6 G A 5 H41 C A 11 1.75 REMARK 500 H21 G A 1 O2 C A 15 1.85 REMARK 500 N1 A A 4 HN3 PSU A 12 1.89 REMARK 500 O6 G A 1 H41 C A 15 1.90 REMARK 500 H1 G A 1 N3 C A 15 1.92 REMARK 500 O2' C A 11 H5' PSU A 12 1.96 REMARK 500 H61 A A 2 O2 PSU A 14 1.96 REMARK 500 H1 G A 5 N3 C A 11 1.99 REMARK 500 H21 G A 3 O2 C A 13 1.99 REMARK 500 H1 G A 3 N3 C A 13 2.03 REMARK 500 O6 G A 3 H41 C A 13 2.04 REMARK 500 H22 G A 9 C8 G A 10 2.12 REMARK 500 HO2' PSU A 7 C5' G A 8 2.13 REMARK 500 N1 A A 2 HN3 PSU A 14 2.13 REMARK 500 H21 G A 5 O2 C A 11 2.14 REMARK 500 O2' A A 4 H5' G A 5 2.15 REMARK 500 H61 A A 4 O2 PSU A 12 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 A A 2 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 8 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 8 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 10 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 10 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 2 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 8 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 8 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 10 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 10 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 A A 2 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 8 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 8 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 3 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 10 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 10 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 4 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 4 A A 2 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 G A 3 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 4 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 280 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KYE A 1 15 PDB 2KYE 2KYE 1 15 SEQRES 1 A 15 G A G A G PSU PSU G G G C PSU C SEQRES 2 A 15 PSU C MODRES 2KYE PSU A 6 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 2KYE PSU A 7 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 2KYE PSU A 12 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 2KYE PSU A 14 U PSEUDOURIDINE-5'-MONOPHOSPHATE HET PSU A 6 30 HET PSU A 7 30 HET PSU A 12 30 HET PSU A 14 30 HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE FORMUL 1 PSU 4(C9 H13 N2 O9 P) LINK O3' G A 5 P PSU A 6 1555 1555 1.61 LINK O3' PSU A 6 P PSU A 7 1555 1555 1.61 LINK O3' PSU A 7 P G A 8 1555 1555 1.61 LINK O3' C A 11 P PSU A 12 1555 1555 1.61 LINK O3' PSU A 12 P C A 13 1555 1555 1.61 LINK O3' C A 13 P PSU A 14 1555 1555 1.61 LINK O3' PSU A 14 P C A 15 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1