HEADER ISOMERASE 09-JUN-10 2KYX TITLE SOLUTION STRUCTURE OF THE RRM DOMAIN OF CYP33 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 3-83; COMPND 5 SYNONYM: PPIASE E, ROTAMASE E, CYCLOPHILIN E, CYCLOPHILIN-33; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIE, CYP33; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX 4T KEYWDS CYP33, RRM, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.PARK,J.H.BUSHWELLER REVDAT 3 14-JUN-23 2KYX 1 REMARK REVDAT 2 05-FEB-20 2KYX 1 SEQADV REVDAT 1 25-AUG-10 2KYX 0 JRNL AUTH S.PARK,U.OSMERS,G.RAMAN,R.H.SCHWANTES,M.O.DIAZ, JRNL AUTH 2 J.H.BUSHWELLER JRNL TITL THE PHD3 DOMAIN OF MLL ACTS AS A CYP33-REGULATED SWITCH JRNL TITL 2 BETWEEN MLL-MEDIATED ACTIVATION AND REPRESSION . JRNL REF BIOCHEMISTRY V. 49 6576 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20677832 JRNL DOI 10.1021/BI1009387 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101747. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 1 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCAB; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY; 3D REMARK 210 1H-15N NOESY; 3D TROSY_HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 21 H ALA A 25 1.59 REMARK 500 H LEU A 8 O VAL A 52 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -1 90.86 58.26 REMARK 500 1 THR A 4 70.16 50.72 REMARK 500 1 HIS A 46 -168.38 -68.45 REMARK 500 1 SER A 70 -166.23 -102.70 REMARK 500 2 ARG A 6 -24.89 165.58 REMARK 500 2 ASP A 31 105.92 -54.39 REMARK 500 2 PRO A 38 77.12 -69.35 REMARK 500 2 HIS A 46 -169.05 -79.65 REMARK 500 2 SER A 70 -161.57 -113.68 REMARK 500 2 LEU A 81 35.65 -84.42 REMARK 500 2 ALA A 82 167.84 58.13 REMARK 500 3 LYS A 5 -93.47 49.73 REMARK 500 3 ARG A 6 -35.95 173.43 REMARK 500 3 ASP A 31 109.54 -59.85 REMARK 500 3 GLU A 69 30.05 70.82 REMARK 500 3 ALA A 82 160.81 59.12 REMARK 500 4 SER A -1 159.68 62.91 REMARK 500 4 THR A 3 -77.20 -128.12 REMARK 500 4 THR A 4 92.76 59.09 REMARK 500 4 ASP A 31 105.07 -59.58 REMARK 500 4 GLU A 44 38.69 37.19 REMARK 500 4 HIS A 46 -179.89 -64.88 REMARK 500 4 SER A 70 -168.17 -106.09 REMARK 500 4 ALA A 82 -165.07 -102.73 REMARK 500 5 THR A 3 158.38 59.09 REMARK 500 5 ASP A 31 106.20 -58.25 REMARK 500 5 LEU A 39 -169.18 -122.79 REMARK 500 5 TYR A 41 43.12 -88.36 REMARK 500 5 GLU A 42 -40.83 -170.43 REMARK 500 5 HIS A 46 -178.94 -57.26 REMARK 500 5 SER A 70 -166.57 -122.82 REMARK 500 6 THR A 4 46.02 -94.27 REMARK 500 6 LYS A 5 159.56 61.43 REMARK 500 6 ARG A 6 18.01 -147.66 REMARK 500 6 GLU A 44 49.88 34.72 REMARK 500 6 GLU A 69 52.85 72.03 REMARK 500 7 THR A 3 90.95 -172.36 REMARK 500 7 THR A 4 80.14 57.23 REMARK 500 7 ARG A 6 61.95 -159.49 REMARK 500 7 LEU A 39 -164.14 -102.88 REMARK 500 7 TYR A 41 -47.87 81.39 REMARK 500 7 HIS A 46 -175.71 -66.33 REMARK 500 7 SER A 70 -166.38 -120.64 REMARK 500 8 SER A -1 -53.17 -131.55 REMARK 500 8 THR A 4 -74.24 -126.13 REMARK 500 8 ARG A 6 -34.06 174.14 REMARK 500 8 TYR A 41 -48.70 82.81 REMARK 500 8 GLU A 44 32.31 39.41 REMARK 500 8 HIS A 46 175.51 -57.90 REMARK 500 8 SER A 70 -165.08 -105.39 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16989 RELATED DB: BMRB DBREF 2KYX A 3 83 UNP Q9UNP9 PPIE_HUMAN 3 83 SEQADV 2KYX GLY A -2 UNP Q9UNP9 EXPRESSION TAG SEQADV 2KYX SER A -1 UNP Q9UNP9 EXPRESSION TAG SEQRES 1 A 83 GLY SER THR THR LYS ARG VAL LEU TYR VAL GLY GLY LEU SEQRES 2 A 83 ALA GLU GLU VAL ASP ASP LYS VAL LEU HIS ALA ALA PHE SEQRES 3 A 83 ILE PRO PHE GLY ASP ILE THR ASP ILE GLN ILE PRO LEU SEQRES 4 A 83 ASP TYR GLU THR GLU LYS HIS ARG GLY PHE ALA PHE VAL SEQRES 5 A 83 GLU PHE GLU LEU ALA GLU ASP ALA ALA ALA ALA ILE ASP SEQRES 6 A 83 ASN MET ASN GLU SER GLU LEU PHE GLY ARG THR ILE ARG SEQRES 7 A 83 VAL ASN LEU ALA LYS HELIX 1 1 ASP A 18 ILE A 27 1 10 HELIX 2 2 LEU A 56 ASN A 68 1 13 SHEET 1 A 5 ILE A 32 GLN A 36 0 SHEET 2 A 5 PHE A 49 PHE A 54 -1 O GLU A 53 N THR A 33 SHEET 3 A 5 LEU A 8 GLY A 11 -1 N LEU A 8 O VAL A 52 SHEET 4 A 5 ARG A 75 LEU A 81 -1 O ARG A 78 N GLY A 11 SHEET 5 A 5 SER A 70 LEU A 72 -1 N LEU A 72 O ARG A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1