HEADER METAL BINDING PROTEIN 10-JUN-10 2KZ2 TITLE CALMODULIN, C-TERMINAL DOMAIN, F92E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 77-149; COMPND 5 SYNONYM: CAM; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: CALM, CAM, RCJMB04_24E7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PEXP5-NT/TOPO; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEXP5-NT/TOPO KEYWDS CALMODULIN, TR2C, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.KORENDOVYCH,D.KULP,Y.WU,H.CHENG,H.RODER,W.DEGRADO REVDAT 2 22-MAY-13 2KZ2 1 JRNL VERSN REVDAT 1 20-APR-11 2KZ2 0 JRNL AUTH I.V.KORENDOVYCH,D.W.KULP,Y.WU,H.CHENG,H.RODER,W.F.DEGRADO JRNL TITL DESIGN OF A SWITCHABLE ELIMINASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 6823 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21482808 JRNL DOI 10.1073/PNAS.1018191108 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE, X-PLOR_NIH REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR_NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB101752. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 CCAMF92E-1, 90% H2O/10% D2O; 0.4 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 CCAMF92E-2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 C(CO)NH; 3D HNCO; 3D H(CCO)NH; 3D REMARK 210 HN(CA)CO; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D N15-NOESY; 3D C13- REMARK 210 NOESY; 3D N15/C13-NOESY; 2D 1H- REMARK 210 15N HSQC IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, SPARKY, TALOS, REMARK 210 XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER A 55 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 59 -134.49 -151.19 REMARK 500 1 HIS A 60 71.33 43.37 REMARK 500 1 LYS A 77 -165.33 -110.43 REMARK 500 1 ASP A 78 95.08 61.98 REMARK 500 1 ASP A 80 -71.15 -81.27 REMARK 500 2 HIS A 60 20.09 -155.31 REMARK 500 2 HIS A 62 -167.28 -54.62 REMARK 500 2 SER A 65 158.45 57.85 REMARK 500 2 GLU A 68 21.20 -76.54 REMARK 500 2 ASP A 78 140.06 68.57 REMARK 500 3 HIS A 61 -78.18 -56.97 REMARK 500 3 HIS A 62 76.47 -174.78 REMARK 500 3 SER A 65 20.24 43.28 REMARK 500 3 GLU A 68 -135.31 -173.38 REMARK 500 3 ASP A 78 124.28 -174.78 REMARK 500 3 ASP A 80 -79.35 -142.69 REMARK 500 3 ASP A 93 67.36 -102.69 REMARK 500 4 HIS A 63 -146.05 56.03 REMARK 500 4 SER A 65 69.83 61.24 REMARK 500 4 GLU A 68 -68.29 62.48 REMARK 500 5 HIS A 61 -29.18 -150.69 REMARK 500 5 HIS A 62 90.06 45.79 REMARK 500 5 SER A 65 -172.33 -51.75 REMARK 500 5 GLU A 68 98.95 49.87 REMARK 500 5 LYS A 77 136.09 58.20 REMARK 500 5 ASP A 80 -72.72 -105.30 REMARK 500 6 HIS A 59 -159.48 -109.37 REMARK 500 6 HIS A 61 -66.38 -153.54 REMARK 500 6 HIS A 62 92.86 39.94 REMARK 500 6 HIS A 63 82.47 -161.74 REMARK 500 7 SER A 57 23.39 47.30 REMARK 500 7 HIS A 59 14.34 -160.23 REMARK 500 7 GLU A 68 90.22 47.71 REMARK 500 7 ASP A 78 111.23 55.11 REMARK 500 8 HIS A 61 81.11 46.65 REMARK 500 8 SER A 66 -112.97 -81.93 REMARK 500 8 ASP A 78 88.97 -171.00 REMARK 500 9 HIS A 59 99.43 56.19 REMARK 500 9 ASP A 78 -86.58 -134.56 REMARK 500 9 ASP A 80 3.31 56.59 REMARK 500 10 SER A 57 -177.07 -63.13 REMARK 500 10 HIS A 61 55.47 -169.36 REMARK 500 10 HIS A 62 -104.56 -77.54 REMARK 500 10 SER A 81 13.73 -158.50 REMARK 500 11 HIS A 59 58.23 -148.91 REMARK 500 11 HIS A 63 17.34 -157.94 REMARK 500 11 SER A 65 77.19 53.08 REMARK 500 11 LYS A 77 -165.51 -105.72 REMARK 500 11 ASP A 78 118.48 72.07 REMARK 500 11 ASP A 80 -64.36 -97.49 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 90 0.18 SIDE CHAIN REMARK 500 1 ARG A 106 0.10 SIDE CHAIN REMARK 500 1 ARG A 126 0.26 SIDE CHAIN REMARK 500 2 ARG A 90 0.18 SIDE CHAIN REMARK 500 2 ARG A 106 0.10 SIDE CHAIN REMARK 500 2 ARG A 126 0.26 SIDE CHAIN REMARK 500 3 ARG A 90 0.17 SIDE CHAIN REMARK 500 3 ARG A 106 0.10 SIDE CHAIN REMARK 500 3 ARG A 126 0.26 SIDE CHAIN REMARK 500 4 ARG A 90 0.18 SIDE CHAIN REMARK 500 4 ARG A 106 0.10 SIDE CHAIN REMARK 500 4 ARG A 126 0.26 SIDE CHAIN REMARK 500 5 ARG A 90 0.17 SIDE CHAIN REMARK 500 5 ARG A 106 0.10 SIDE CHAIN REMARK 500 5 ARG A 126 0.26 SIDE CHAIN REMARK 500 6 ARG A 90 0.18 SIDE CHAIN REMARK 500 6 ARG A 106 0.10 SIDE CHAIN REMARK 500 6 ARG A 126 0.26 SIDE CHAIN REMARK 500 7 ARG A 90 0.18 SIDE CHAIN REMARK 500 7 ARG A 106 0.10 SIDE CHAIN REMARK 500 7 ARG A 126 0.26 SIDE CHAIN REMARK 500 8 ARG A 90 0.18 SIDE CHAIN REMARK 500 8 ARG A 106 0.10 SIDE CHAIN REMARK 500 8 ARG A 126 0.26 SIDE CHAIN REMARK 500 9 ARG A 90 0.18 SIDE CHAIN REMARK 500 9 ARG A 106 0.10 SIDE CHAIN REMARK 500 9 ARG A 126 0.26 SIDE CHAIN REMARK 500 10 ARG A 90 0.18 SIDE CHAIN REMARK 500 10 ARG A 106 0.10 SIDE CHAIN REMARK 500 10 ARG A 126 0.26 SIDE CHAIN REMARK 500 11 ARG A 90 0.18 SIDE CHAIN REMARK 500 11 ARG A 106 0.10 SIDE CHAIN REMARK 500 11 ARG A 126 0.26 SIDE CHAIN REMARK 500 12 ARG A 90 0.18 SIDE CHAIN REMARK 500 12 ARG A 106 0.10 SIDE CHAIN REMARK 500 12 ARG A 126 0.26 SIDE CHAIN REMARK 500 13 ARG A 90 0.18 SIDE CHAIN REMARK 500 13 ARG A 106 0.10 SIDE CHAIN REMARK 500 13 ARG A 126 0.26 SIDE CHAIN REMARK 500 14 ARG A 90 0.18 SIDE CHAIN REMARK 500 14 ARG A 106 0.10 SIDE CHAIN REMARK 500 14 ARG A 126 0.26 SIDE CHAIN REMARK 500 15 ARG A 90 0.17 SIDE CHAIN REMARK 500 15 ARG A 106 0.10 SIDE CHAIN REMARK 500 15 ARG A 126 0.26 SIDE CHAIN REMARK 500 16 ARG A 90 0.18 SIDE CHAIN REMARK 500 16 ARG A 106 0.10 SIDE CHAIN REMARK 500 16 ARG A 126 0.26 SIDE CHAIN REMARK 500 17 ARG A 90 0.17 SIDE CHAIN REMARK 500 17 ARG A 106 0.10 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 60 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 150 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 131 OD2 57.9 REMARK 620 3 GLN A 135 O 125.2 112.6 REMARK 620 4 GLU A 140 OE2 62.0 85.2 162.1 REMARK 620 5 ASP A 133 OD1 67.5 77.3 58.1 128.2 REMARK 620 6 ASP A 133 OD2 91.1 55.5 57.1 140.5 47.0 REMARK 620 7 ASP A 129 OD1 68.8 123.1 81.8 87.0 64.6 110.8 REMARK 620 8 GLU A 140 OE1 105.6 128.3 115.3 49.0 146.6 161.9 82.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 149 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 99 O REMARK 620 2 ASN A 97 OD1 75.2 REMARK 620 3 GLU A 104 OE1 77.0 152.0 REMARK 620 4 ASP A 93 OD1 119.2 58.4 142.0 REMARK 620 5 GLU A 104 OE2 108.7 137.4 51.9 131.9 REMARK 620 6 ASP A 95 OD1 140.6 71.3 132.9 56.8 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 150 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16994 RELATED DB: BMRB DBREF 2KZ2 A 76 148 UNP P62149 CALM_CHICK 77 149 SEQADV 2KZ2 SER A 55 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 GLY A 56 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 SER A 57 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 HIS A 58 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 HIS A 59 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 HIS A 60 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 HIS A 61 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 HIS A 62 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 HIS A 63 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 GLY A 64 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 SER A 65 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 SER A 66 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 GLY A 67 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 GLU A 68 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 ASN A 69 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 LEU A 70 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 TYR A 71 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 PHE A 72 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 GLN A 73 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 SER A 74 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 LEU A 75 UNP P62149 EXPRESSION TAG SEQADV 2KZ2 GLU A 92 UNP P62149 PHE 93 ENGINEERED MUTATION SEQRES 1 A 94 SER GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER GLY SEQRES 2 A 94 GLU ASN LEU TYR PHE GLN SER LEU MET LYS ASP THR ASP SEQRES 3 A 94 SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL GLU ASP SEQRES 4 A 94 LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU LEU ARG SEQRES 5 A 94 HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR ASP GLU SEQRES 6 A 94 GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE ASP GLY SEQRES 7 A 94 ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN MET MET SEQRES 8 A 94 THR ALA LYS HET CA A 149 1 HET CA A 150 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 ASN A 69 LYS A 77 1 9 HELIX 2 2 SER A 81 ASP A 93 1 13 HELIX 3 3 SER A 101 GLY A 113 1 13 HELIX 4 4 THR A 117 ASP A 129 1 13 HELIX 5 5 ASN A 137 ALA A 147 1 11 LINK OD1 ASP A 131 CA CA A 150 1555 1555 2.20 LINK OD2 ASP A 131 CA CA A 150 1555 1555 2.25 LINK O GLN A 135 CA CA A 150 1555 1555 2.31 LINK O TYR A 99 CA CA A 149 1555 1555 2.31 LINK OD1 ASN A 97 CA CA A 149 1555 1555 2.38 LINK OE1 GLU A 104 CA CA A 149 1555 1555 2.50 LINK OD1 ASP A 93 CA CA A 149 1555 1555 2.47 LINK OE2 GLU A 104 CA CA A 149 1555 1555 2.42 LINK OE2 GLU A 140 CA CA A 150 1555 1555 2.68 LINK OD1 ASP A 133 CA CA A 150 1555 1555 2.59 LINK OD1 ASP A 95 CA CA A 149 1555 1555 2.60 LINK OD2 ASP A 133 CA CA A 150 1555 1555 2.79 LINK OD1 ASP A 129 CA CA A 150 1555 1555 2.22 LINK OE1 GLU A 140 CA CA A 150 1555 1555 2.50 SITE 1 AC1 6 GLU A 92 ASP A 93 ASP A 95 ASN A 97 SITE 2 AC1 6 TYR A 99 GLU A 104 SITE 1 AC2 6 ASP A 129 ASP A 131 ASP A 133 GLN A 135 SITE 2 AC2 6 VAL A 136 GLU A 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1