HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-JUN-10 2KZ6 TITLE SOLUTION STRUCTURE OF PROTEIN CV0426 FROM CHROMOBACTERIUM VIOLACEUM, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET CVT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 536; SOURCE 4 GENE: CV_0426; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: P15TV LIC KEYWDS PROTEIN OF UNKNOWN FUNCTION, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,A.YEE,H.LEE,A.SEMESI,J.PRESTEGARD,G.T.MONTELIONE, AUTHOR 2 C.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 01-MAY-24 2KZ6 1 REMARK REVDAT 2 05-FEB-20 2KZ6 1 REMARK SEQADV REVDAT 1 30-JUN-10 2KZ6 0 JRNL AUTH A.LEMAK,A.YEE,H.LEE,A.SEMESI,J.PRESTEGARD,G.T.MONTELIONE, JRNL AUTH 2 C.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF PROTEIN CV0426 FROM CHROMOBACTERIUM JRNL TITL 2 VIOLACEUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNSSOLVE REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINMENT IN WATER BATH WITH RDC REMARK 3 RESTRAINTS REMARK 4 REMARK 4 2KZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101756. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 450 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] CV0426-1, REMARK 210 10 MM MOPS-2, 450 MM SODIUM REMARK 210 CHLORIDE-3, 10 UM ZNSO4-4, 10 MM REMARK 210 DTT-5, 0.01 % NAN3-6, 10 MM REMARK 210 BENZAMIDINE-7, 10 % D2O-8, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C_AROM NOESY; 2D 1H-15N REMARK 210 HSQC (IPAP) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FMC, TALOS, CYANA REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 117.79 -163.93 REMARK 500 1 ASN A 15 87.77 52.24 REMARK 500 1 GLU A 85 95.77 -62.03 REMARK 500 1 THR A 88 80.74 57.01 REMARK 500 1 GLN A 92 107.38 -59.50 REMARK 500 2 ASN A 15 73.88 61.52 REMARK 500 2 VAL A 87 -164.51 -111.61 REMARK 500 3 ASN A 15 78.20 51.91 REMARK 500 3 ASP A 89 -83.36 -157.71 REMARK 500 4 ASN A 15 88.91 63.35 REMARK 500 4 LEU A 90 -172.49 177.31 REMARK 500 5 ASN A 15 79.20 37.52 REMARK 500 5 THR A 88 144.23 -170.68 REMARK 500 6 ASN A 15 86.35 60.06 REMARK 500 6 SER A 91 -70.66 -64.57 REMARK 500 7 ASN A 15 87.23 65.05 REMARK 500 7 THR A 88 80.99 45.77 REMARK 500 8 SER A 5 95.08 -165.26 REMARK 500 8 ASN A 15 72.59 31.76 REMARK 500 9 ASN A 15 77.81 65.41 REMARK 500 9 THR A 88 -164.13 -78.71 REMARK 500 9 SER A 91 100.44 -163.29 REMARK 500 10 SER A 5 109.85 -165.90 REMARK 500 10 PRO A 84 112.76 -32.28 REMARK 500 10 THR A 86 82.65 60.45 REMARK 500 11 ASN A 15 84.64 52.78 REMARK 500 11 GLU A 85 85.74 -68.41 REMARK 500 11 THR A 86 82.59 -67.06 REMARK 500 12 SER A 5 102.12 -165.58 REMARK 500 12 ASN A 15 80.47 64.10 REMARK 500 12 GLU A 85 91.75 -61.82 REMARK 500 12 THR A 86 91.63 -65.59 REMARK 500 12 THR A 88 -59.60 57.66 REMARK 500 12 ASP A 89 99.16 -56.66 REMARK 500 12 SER A 91 -50.60 -144.44 REMARK 500 13 HIS A 4 -36.17 -39.76 REMARK 500 13 ASN A 15 82.31 39.52 REMARK 500 14 CYS A 55 34.45 -94.91 REMARK 500 15 THR A 86 9.69 55.24 REMARK 500 15 SER A 91 -63.44 -139.14 REMARK 500 15 GLN A 92 111.13 -172.52 REMARK 500 15 ILE A 93 87.29 -64.38 REMARK 500 16 ASN A 15 74.28 43.85 REMARK 500 16 VAL A 87 68.80 60.62 REMARK 500 16 ASP A 89 -166.67 -101.26 REMARK 500 16 GLN A 92 81.36 59.75 REMARK 500 17 ASN A 15 89.03 66.68 REMARK 500 17 GLN A 61 19.69 51.81 REMARK 500 17 VAL A 87 84.70 60.51 REMARK 500 18 ASN A 15 76.83 68.09 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CVT2 RELATED DB: TARGETDB REMARK 900 RELATED ID: 16999 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE PROVIDED IS THE TRANSLATED PLASMID SEQUENCE OBTAINED REMARK 999 FROM CHROMOBACTERIUM VIOLACEUM ATCC 12472 GENOMIC DNA CLONING. THE REMARK 999 SEQUENCE OF THE PROTEIN THAT WAS SOLVED HAS GLUTAMIC ACID IN REMARK 999 RESIDUE 7 AND NOT GLUTAMINE. DBREF 2KZ6 A 1 100 UNP Q7P0Y9 Q7P0Y9_CHRVO 1 100 SEQADV 2KZ6 GLN A -1 UNP Q7P0Y9 EXPRESSION TAG SEQADV 2KZ6 GLY A 0 UNP Q7P0Y9 EXPRESSION TAG SEQADV 2KZ6 GLU A 7 UNP Q7P0Y9 GLN 7 SEE REMARK 999 SEQRES 1 A 102 GLN GLY MET LEU LEU HIS SER VAL GLU THR PRO ARG GLY SEQRES 2 A 102 GLU ILE LEU ASN VAL SER GLU GLN GLU ALA ARG ASP VAL SEQRES 3 A 102 PHE GLY ALA SER GLU GLN ALA ILE ALA ASP ALA ARG LYS SEQRES 4 A 102 ALA THR ILE LEU GLN THR LEU ARG ILE GLU ARG ASP GLU SEQRES 5 A 102 ARG LEU ARG ALA CYS ASP TRP THR GLN VAL GLN ASP VAL SEQRES 6 A 102 VAL LEU THR ALA ASP GLN LYS ALA THR TRP ALA LYS TYR SEQRES 7 A 102 ARG GLN ALA LEU ARG ASP LEU PRO GLU THR VAL THR ASP SEQRES 8 A 102 LEU SER GLN ILE VAL TRP PRO GLN LEU PRO VAL HELIX 1 1 SER A 17 VAL A 24 1 8 HELIX 2 2 SER A 28 CYS A 55 1 28 HELIX 3 3 CYS A 55 VAL A 60 1 6 HELIX 4 4 THR A 66 LEU A 83 1 18 SHEET 1 A 2 LEU A 3 THR A 8 0 SHEET 2 A 2 GLY A 11 VAL A 16 -1 O VAL A 16 N LEU A 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1