HEADER PROTEIN TRANSPORT 15-JUN-10 2KZB TITLE SOLUTION STRUCTURE OF ALPHA-MANNOSIDASE BINDING DOMAIN OF ATG19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 19; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA-MANNOSIDASE BINDING DOMAIN; COMPND 5 SYNONYM: ATG19, CYTOPLASM-TO-VACUOLE TARGETING PROTEIN 19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ATG19, CVT19, YOL082W, YOL01, O0980; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS SELECTIVE AUTOPHAGY, ATG19, ALPHA-MANNOSIDASE, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WATANABE,N.NODA,H.KUMETA,K.SUZUKI,Y.OHSUMI,F.INAGAKI REVDAT 4 14-JUN-23 2KZB 1 REMARK REVDAT 3 26-FEB-20 2KZB 1 REMARK SEQADV REVDAT 2 12-MAR-14 2KZB 1 JRNL VERSN REVDAT 1 21-JUL-10 2KZB 0 JRNL AUTH Y.WATANABE,N.N.NODA,H.KUMETA,K.SUZUKI,Y.OHSUMI,F.INAGAKI JRNL TITL SELECTIVE TRANSPORT OF ALPHA-MANNOSIDASE BY AUTOPHAGIC JRNL TITL 2 PATHWAYS: STRUCTURAL BASIS FOR CARGO RECOGNITION BY ATG19 JRNL TITL 3 AND ATG34. JRNL REF J.BIOL.CHEM. V. 285 30026 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20659891 JRNL DOI 10.1074/JBC.M110.143545 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101761. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25MM SODIUM PHOSPHATE-1, 100MM REMARK 210 SODIUM CHLORIDE-2, 2MM DTT-3, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNHA; 3D HBHA(CO) REMARK 210 NH; 2D 1H-13C HSQC; 2D 1H-1H REMARK 210 TOCSY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, SPARKY REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 250 REMARK 465 PRO A 251 REMARK 465 HIS A 252 REMARK 465 MET A 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 255 156.14 -49.66 REMARK 500 1 ARG A 269 -160.16 -124.24 REMARK 500 1 ASN A 279 96.73 -46.91 REMARK 500 1 SER A 283 -84.92 -118.02 REMARK 500 1 VAL A 284 156.31 167.61 REMARK 500 1 ALA A 296 -69.75 -130.22 REMARK 500 1 PRO A 300 -162.28 -74.99 REMARK 500 1 GLN A 303 109.25 -57.00 REMARK 500 1 LYS A 315 24.55 47.80 REMARK 500 1 GLU A 316 -158.62 -77.91 REMARK 500 1 TYR A 317 139.85 -175.57 REMARK 500 1 PHE A 323 162.03 168.72 REMARK 500 1 TYR A 325 91.50 -179.51 REMARK 500 1 LEU A 327 -166.76 -60.73 REMARK 500 1 SER A 333 96.72 -37.67 REMARK 500 1 ASN A 339 -174.49 -52.62 REMARK 500 1 ASN A 357 161.04 -49.55 REMARK 500 1 LEU A 358 -90.99 -116.76 REMARK 500 1 ARG A 359 153.10 80.04 REMARK 500 1 LEU A 364 -60.15 -97.81 REMARK 500 2 PRO A 257 -76.90 -75.00 REMARK 500 2 ARG A 260 -175.52 -58.50 REMARK 500 2 ARG A 269 -166.45 -103.77 REMARK 500 2 ASN A 279 97.01 -47.50 REMARK 500 2 THR A 281 176.86 -51.88 REMARK 500 2 SER A 283 -81.53 -121.17 REMARK 500 2 VAL A 284 155.52 166.09 REMARK 500 2 THR A 294 127.08 -170.83 REMARK 500 2 ALA A 296 -76.38 -126.33 REMARK 500 2 PRO A 300 -161.27 -75.01 REMARK 500 2 THR A 302 39.47 -89.35 REMARK 500 2 LYS A 315 24.22 49.36 REMARK 500 2 GLU A 316 -169.14 -76.44 REMARK 500 2 PHE A 323 165.62 173.98 REMARK 500 2 TYR A 325 101.61 -178.04 REMARK 500 2 LEU A 327 -162.72 -69.69 REMARK 500 2 LEU A 329 154.18 -38.43 REMARK 500 2 SER A 333 98.71 -36.71 REMARK 500 2 ASN A 339 -174.41 -52.83 REMARK 500 2 SER A 353 162.65 84.34 REMARK 500 2 LEU A 358 -87.78 -121.52 REMARK 500 2 ARG A 359 158.20 71.30 REMARK 500 3 GLU A 255 70.19 40.26 REMARK 500 3 PRO A 257 -162.74 -74.95 REMARK 500 3 ASN A 258 -71.65 -120.11 REMARK 500 3 ARG A 260 -175.63 -57.23 REMARK 500 3 ARG A 269 -159.24 -129.75 REMARK 500 3 SER A 272 169.60 179.46 REMARK 500 3 ASN A 279 92.64 -52.62 REMARK 500 3 SER A 283 -79.76 -140.16 REMARK 500 REMARK 500 THIS ENTRY HAS 449 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17006 RELATED DB: BMRB DBREF 2KZB A 254 367 UNP P35193 ATG19_YEAST 254 367 SEQADV 2KZB GLY A 250 UNP P35193 EXPRESSION TAG SEQADV 2KZB PRO A 251 UNP P35193 EXPRESSION TAG SEQADV 2KZB HIS A 252 UNP P35193 EXPRESSION TAG SEQADV 2KZB MET A 253 UNP P35193 EXPRESSION TAG SEQRES 1 A 118 GLY PRO HIS MET VAL GLU PRO PRO ASN GLU ARG SER LEU SEQRES 2 A 118 GLN ILE THR MET ASN GLN ARG ASP ASN SER LEU TYR PHE SEQRES 3 A 118 GLN LEU PHE ASN ASN THR ASN SER VAL LEU ALA GLY ASN SEQRES 4 A 118 CYS LYS LEU LYS PHE THR ASP ALA GLY ASP LYS PRO THR SEQRES 5 A 118 THR GLN ILE ILE ASP MET GLY PRO HIS GLU ILE GLY ILE SEQRES 6 A 118 LYS GLU TYR LYS GLU TYR ARG TYR PHE PRO TYR ALA LEU SEQRES 7 A 118 ASP LEU GLU ALA GLY SER THR ILE GLU ILE GLU ASN GLN SEQRES 8 A 118 TYR GLY GLU VAL ILE PHE LEU GLY LYS TYR GLY SER SER SEQRES 9 A 118 PRO MET ILE ASN LEU ARG PRO PRO SER ARG LEU SER ALA SEQRES 10 A 118 GLU SHEET 1 A 4 LYS A 318 TYR A 322 0 SHEET 2 A 4 SER A 272 ASN A 279 -1 N PHE A 275 O TYR A 320 SHEET 3 A 4 LEU A 262 ARG A 269 -1 N ARG A 269 O SER A 272 SHEET 4 A 4 ILE A 356 ASN A 357 -1 O ILE A 356 N ILE A 264 SHEET 1 B 4 ILE A 305 ASP A 306 0 SHEET 2 B 4 LYS A 290 LEU A 291 -1 N LEU A 291 O ILE A 305 SHEET 3 B 4 ILE A 335 GLU A 338 -1 O GLU A 338 N LYS A 290 SHEET 4 B 4 VAL A 344 GLY A 348 -1 O ILE A 345 N ILE A 337 CISPEP 1 PHE A 323 PRO A 324 1 -0.04 CISPEP 2 PHE A 323 PRO A 324 2 -0.01 CISPEP 3 PHE A 323 PRO A 324 3 0.03 CISPEP 4 PHE A 323 PRO A 324 4 0.00 CISPEP 5 PHE A 323 PRO A 324 5 0.05 CISPEP 6 PHE A 323 PRO A 324 6 0.02 CISPEP 7 PHE A 323 PRO A 324 7 0.02 CISPEP 8 PHE A 323 PRO A 324 8 0.04 CISPEP 9 PHE A 323 PRO A 324 9 0.00 CISPEP 10 PHE A 323 PRO A 324 10 -0.08 CISPEP 11 PHE A 323 PRO A 324 11 -0.05 CISPEP 12 PHE A 323 PRO A 324 12 0.04 CISPEP 13 PHE A 323 PRO A 324 13 0.00 CISPEP 14 PHE A 323 PRO A 324 14 0.00 CISPEP 15 PHE A 323 PRO A 324 15 -0.03 CISPEP 16 PHE A 323 PRO A 324 16 0.02 CISPEP 17 PHE A 323 PRO A 324 17 -0.08 CISPEP 18 PHE A 323 PRO A 324 18 -0.13 CISPEP 19 PHE A 323 PRO A 324 19 0.01 CISPEP 20 PHE A 323 PRO A 324 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1