HEADER HYDROLASE 23-JUN-10 2KZR TITLE SOLUTION NMR STRUCTURE OF UBIQUITIN THIOESTERASE OTU1 (EC 3.1.2.-) TITLE 2 FROM MUS MUSCULUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 MMT2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN THIOESTERASE OTU1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBX-LIKE DOMAIN 42-127; COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: YOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28-MHL KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.CHITAYAT,A.GUTMANAS,A.LEMAK,A.YEE,I.BEZSONOVA,B.WU,R.S.DOHERTY, AUTHOR 2 A.SEMESI,G.T.MONTELIONE,C.H.ARROWSMITH,S.DHE-PAGANON,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 15-MAY-24 2KZR 1 REMARK REVDAT 4 14-JUN-23 2KZR 1 REMARK REVDAT 3 05-FEB-20 2KZR 1 REMARK SEQADV REVDAT 2 04-AUG-10 2KZR 1 JRNL REVDAT 1 07-JUL-10 2KZR 0 JRNL AUTH S.CHITAYAT,A.GUTMANAS,A.LEMAK,A.YEE,I.BEZSONOVA,B.WU, JRNL AUTH 2 R.S.DOHERTY,A.SEMESI,C.H.ARROWSMITH,S.DHE-PAGANON JRNL TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET MMT2A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, FMCGUI 2.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LEMAK, ARROWSMITH (FMCGUI) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101776. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 MMT2A, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D 1H- REMARK 210 13C AROM NOESY; 3D HBHA(CO)NH; REMARK 210 3D HNCA; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, NMRPIPE, TOPSPIN, SPARKY, REMARK 210 TALOS+, NMRDRAW, MOLMOL, MDDGUI REMARK 210 1.0, FMCGUI 2.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 48 101.46 -41.22 REMARK 500 1 ARG A 57 -29.16 -141.88 REMARK 500 1 SER A 68 96.46 -68.47 REMARK 500 1 GLN A 78 -51.16 78.66 REMARK 500 1 PRO A 81 89.01 -56.27 REMARK 500 2 PRO A 48 107.60 -39.65 REMARK 500 2 PRO A 65 42.79 -77.66 REMARK 500 2 THR A 79 30.99 -96.03 REMARK 500 2 ARG A 80 120.18 67.44 REMARK 500 2 LYS A 82 101.77 61.54 REMARK 500 2 PRO A 85 -35.73 -36.08 REMARK 500 3 PRO A 48 108.36 -43.09 REMARK 500 3 ARG A 80 107.60 54.64 REMARK 500 4 PRO A 48 108.52 -45.61 REMARK 500 4 CYS A 51 84.37 56.03 REMARK 500 5 PRO A 48 106.66 -49.25 REMARK 500 5 CYS A 51 79.42 55.43 REMARK 500 5 SER A 55 -51.32 -126.72 REMARK 500 5 PRO A 65 83.50 -53.15 REMARK 500 6 SER A 18 -166.26 -116.81 REMARK 500 6 PRO A 48 100.31 -58.06 REMARK 500 6 LEU A 52 99.92 -67.18 REMARK 500 6 PRO A 65 44.82 -78.94 REMARK 500 7 PRO A 65 78.49 -69.60 REMARK 500 8 SER A 18 -166.82 -116.07 REMARK 500 8 PRO A 65 34.24 -87.20 REMARK 500 8 GLN A 78 12.94 59.91 REMARK 500 9 PRO A 48 104.97 -42.04 REMARK 500 9 PRO A 65 41.77 -81.61 REMARK 500 9 SER A 68 99.51 -64.40 REMARK 500 9 ARG A 80 91.75 65.59 REMARK 500 9 PRO A 85 85.48 -59.45 REMARK 500 10 PRO A 48 103.45 -37.45 REMARK 500 10 CYS A 51 74.35 56.14 REMARK 500 10 PRO A 65 25.49 -78.49 REMARK 500 11 PRO A 48 108.04 -45.29 REMARK 500 11 PRO A 65 36.65 -80.66 REMARK 500 11 ARG A 80 165.46 66.89 REMARK 500 12 ILE A 33 -70.07 -84.27 REMARK 500 12 SER A 40 12.62 -140.37 REMARK 500 12 PRO A 65 31.51 -78.07 REMARK 500 12 ARG A 80 76.04 43.99 REMARK 500 12 SER A 84 77.84 64.72 REMARK 500 12 PRO A 85 82.57 -69.90 REMARK 500 13 ILE A 33 -70.35 -82.78 REMARK 500 13 PRO A 48 109.21 -50.89 REMARK 500 13 CYS A 51 83.05 56.27 REMARK 500 13 PRO A 65 78.26 -63.21 REMARK 500 13 ARG A 80 76.67 54.94 REMARK 500 13 LYS A 82 95.24 -67.47 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17017 RELATED DB: BMRB REMARK 900 RELATED ID: MMT2A RELATED DB: TARGETDB DBREF 2KZR A 1 86 UNP Q8CB27 OTU1_MOUSE 42 127 SEQADV 2KZR SER A 86 UNP Q8CB27 ALA 127 CONFLICT SEQRES 1 A 86 TRP ARG VAL ARG CYS LYS ALA LYS GLY GLY THR HIS LEU SEQRES 2 A 86 LEU GLN GLY LEU SER SER ARG THR ARG LEU ARG GLU LEU SEQRES 3 A 86 GLN GLY GLN ILE ALA ALA ILE THR GLY ILE ALA PRO GLY SEQRES 4 A 86 SER GLN ARG ILE LEU VAL GLY TYR PRO PRO GLU CYS LEU SEQRES 5 A 86 ASP LEU SER ASP ARG ASP ILE THR LEU GLY ASP LEU PRO SEQRES 6 A 86 ILE GLN SER GLY ASP MET LEU ILE VAL GLU GLU ASP GLN SEQRES 7 A 86 THR ARG PRO LYS ALA SER PRO SER HELIX 1 1 ARG A 22 THR A 34 1 13 SHEET 1 A 4 GLY A 10 LEU A 14 0 SHEET 2 A 4 VAL A 3 ALA A 7 -1 N CYS A 5 O HIS A 12 SHEET 3 A 4 MET A 71 ILE A 73 1 O LEU A 72 N ARG A 4 SHEET 4 A 4 LEU A 44 VAL A 45 -1 N LEU A 44 O ILE A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1